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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005665
|accession_numbers=CAGE;DRX008293;DRR009165;DRZ000590;DRZ001975;DRZ011940;DRZ013325
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000483,UBERON:0000033,UBERON:0000479,UBERON:0001007,UBERON:0000344,UBERON:0004121,UBERON:0000064,UBERON:0004119,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0005911,UBERON:0004923,UBERON:0000161,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0010371,UBERON:0003350,UBERON:0003929,UBERON:0000486,UBERON:0004807,UBERON:0003729,UBERON:0010317,UBERON:0001555,UBERON:0001828,UBERON:0001949,UBERON:0001004,UBERON:0000153,UBERON:0007811,UBERON:0000165,UBERON:0000166
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000483,UBERON:0000033,UBERON:0000479,UBERON:0001007,UBERON:0000344,UBERON:0004121,UBERON:0000064,UBERON:0004119,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0005911,UBERON:0004923,UBERON:0000161,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0010371,UBERON:0003350,UBERON:0003929,UBERON:0000486,UBERON:0004807,UBERON:0003729,UBERON:0010317,UBERON:0001555,UBERON:0001828,UBERON:0001949,UBERON:0001004,UBERON:0000153,UBERON:0007811,UBERON:0000165,UBERON:0000166
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:0002076,CL:0002251,CL:0002621
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:0002076,CL:0002251,CL:0002621
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr17:7493405..7493419,-!p1@SOX15!2.35!224.18!SOX15;;chr1:209979467..209979494,-!p1@IRF6!2.24!192.87!IRF6;;chr1:6479968..6479986,-!p1@HES2!2.09!123.11!HES2;;chr11:34642612..34642646,+!p1@EHF!2.07!115.57!EHF;;chr1:209979411..209979433,-!p2@IRF6!2.04!107.45!IRF6;;chr3:111314186..111314204,-!p1@ZBED2!1.93!83.49!ZBED2;;chr3:189507432..189507459,+!p1@TP63!1.71!50.25!TP63;;chr6:10415276..10415341,-!p2@TFAP2A!1.64!51.60!TFAP2A;;chr8:10588010..10588030,-!p1@SOX7!1.64!42.71!SOX7;;chr15:83953397..83953425,-!p1@BNC1!1.60!44.26!BNC1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.58!36.72!ZBED1;;chr6:10412600..10412637,-!p1@TFAP2A!1.57!58.56!TFAP2A;;chr5:134369879..134369898,-!p2@PITX1!1.54!33.82!PITX1;;chr5:134369905..134369972,-!p1@PITX1!1.53!49.86!PITX1;;chr15:101069113..101069169,-!p1@CERS3!1.50!30.73!CERS3;;chr12:54785054..54785072,-!p4@ZNF385A!1.44!30.15!ZNF385A;;chr12:54785074..54785122,-!p2@ZNF385A!1.42!38.46!ZNF385A;;chr4:57547454..57547469,-!p1@HOPX!1.37!22.61!HOPX;;chr12:66218836..66218888,+!p1@HMGA2!1.35!191.91!HMGA2;;chr17:7492684..7492778,-!p2@SOX15!1.33!42.90!SOX15;;chr3:111314230..111314241,-!p2@ZBED2!1.29!18.55!ZBED2;;chr5:2751762..2751784,-!p1@IRX2!1.27!17.59!IRX2;;chr11:65686802..65686818,+!p6@DRAP1!1.22!27.06!DRAP1;;chr20:55204351..55204377,+!p1@TFAP2C!1.22!19.91!TFAP2C;;chr6:10415484..10415508,-!p3@TFAP2A!1.17!13.72!TFAP2A;;chr12:66218598..66218645,+!p2@HMGA2!1.14!58.75!HMGA2;;chr8:49833948..49833973,-!p2@SNAI2!1.11!74.79!SNAI2;;chr1:24645832..24645853,+!p1@GRHL3!1.09!11.21!GRHL3;;chr11:34642656..34642667,+!p2@EHF!1.04!9.86!EHF;;chr8:102504651..102504683,+!p1@GRHL2!1.03!9.66!GRHL2;;chr12:27485762..27485776,+!p3@ARNTL2!1.00!24.54!ARNTL2;;chr8:49833978..49833996,-!p1@SNAI2!0.96!171.23!SNAI2;;chr2:46524897..46524911,+!p2@EPAS1!0.95!22.80!EPAS1;;chr2:122042770..122042785,-!p1@TFCP2L1!0.94!7.73!TFCP2L1;;chr11:65554528..65554546,+!p1@OVOL1!0.94!7.73!OVOL1;;chr1:209979449..209979460,-!p3@IRF6!0.94!7.73!IRF6;;chr1:209979375..209979386,-!p4@IRF6!0.93!7.54!IRF6;;chr19:45908292..45908374,-!p1@PPP1R13L!0.92!67.25!PPP1R13L;;chr16:67881588..67881612,-!p2@CENPT!0.92!10.24!CENPT;;chr15:83953373..83953386,-!p2@BNC1!0.92!7.34!BNC1;;chr5:72744594..72744609,-!p1@FOXD1!0.91!34.40!FOXD1;;chr11:65686732..65686756,+!p2@DRAP1!0.91!31.69!DRAP1;;chr5:2751785..2751808,-!p2@IRX2!0.91!7.15!IRX2;;chr4:111544219..111544240,-!p1@PITX2!0.91!7.15!PITX2;;chr9:100615499..100615519,+!p1@FOXE1!0.89!6.76!FOXE1;;chr2:70314240..70314256,+!p4@PCBP1!0.88!14.11!PCBP1;;chr1:201979743..201979762,+!p1@ELF3!0.88!6.57!ELF3;;chr1:2461692..2461710,-!p1@HES5!0.87!6.38!HES5;;chr6:10412576..10412599,-!p5@TFAP2A!0.87!6.38!TFAP2A;;chr14:37131058..37131139,+!p1@PAX9!0.86!6.18!PAX9;;chr12:66218255..66218304,+!p3@HMGA2!0.85!17.01!HMGA2;;chr6:28321971..28321995,-!p1@ZNF323!0.84!5.99!ZNF323;;chr1:24645921..24645973,+!p2@GRHL3!0.81!5.41!GRHL3;;chr1:158979792..158979814,+!p2@IFI16!0.80!55.66!IFI16;;chr17:3571863..3571881,-!p1@TAX1BP3!0.79!404.11!TAX1BP3;;chr13:73633131..73633149,+!p1@KLF5!0.79!60.30!KLF5;;chr11:34645791..34645836,+!p3@EHF!0.79!5.22!EHF;;chr17:80797886..80797906,-!p1@ZNF750!0.79!5.22!ZNF750;;chr6:10419768..10419819,-!p6@TFAP2A!0.79!5.22!TFAP2A;;chr17:41622731..41622764,-!p5@ETV4!0.78!5.02!ETV4;;chr12:66218904..66218913,+!p11@HMGA2!0.78!5.02!HMGA2;;chr1:24646263..24646277,+!p4@GRHL3!0.78!5.02!GRHL3;;chr17:70117153..70117174,+!p1@SOX9!0.77!55.66!SOX9;;chr12:27485823..27485868,+!p2@ARNTL2!0.77!21.65!ARNTL2;;chr6:1312325..1312340,+!p1@FOXQ1!0.75!7.92!FOXQ1;;chr16:79634624..79634642,-!p1@MAF!0.74!19.52!MAF;;chr12:66218003..66218018,+!p9@HMGA2!0.74!5.60!HMGA2;;chr14:21566731..21566836,-!p1@ZNF219!0.73!52.37!ZNF219;;chr17:41623692..41623715,-!p1@ETV4!0.73!20.49!ETV4;;chr12:27485889..27485900,+!p4@ARNTL2!0.72!5.22!ARNTL2;;chr5:3595934..3595957,+!p2@IRX1!0.72!4.25!IRX1;;chr2:208030647..208030689,-!p1@KLF7!0.71!39.04!KLF7;;chr2:70142232..70142251,+!p1@MXD1!0.71!25.90!MXD1;;chr12:48298765..48298783,-!p2@VDR!0.71!9.28!VDR;;chr11:65667846..65667868,-!p1@FOSL1!0.70!119.82!FOSL1;;chr19:42636586..42636607,-!p1@POU2F2!0.70!12.18!POU2F2;;chr12:66218183..66218209,+!p4@HMGA2!0.70!8.31!HMGA2;;chr19:57792157..57792170,+!p6@ZNF460!0.70!6.18!ZNF460;;chr6:29648890..29648944,-!p1@ZFP57!0.70!4.06!ZFP57;;chr6:28321909..28321965,-!p3@ZNF323!0.69!3.87!ZNF323;;chr3:141121847..141121868,+!p5@ZBTB38!0.67!5.99!ZBTB38;;chr3:138665937..138665968,-!p1@FOXL2!0.67!3.67!FOXL2;;chr16:86612320..86612394,+!p1@FOXL1!0.67!3.67!FOXL1;;chr16:8962544..8962584,-!p2@CARHSP1!0.66!9.08!CARHSP1;;chr12:66218573..66218596,+!p7@HMGA2!0.66!5.60!HMGA2;;chr17:41622925..41622976,-!p3@ETV4!0.65!5.60!ETV4;;chr12:66218212..66218244,+!p5@HMGA2!0.65!5.41!HMGA2;;chr10:64018918..64018936,+!p2@ZNF365!0.65!3.48!ZNF365;;chr12:66218923..66218934,+!p14@HMGA2!0.65!3.48!HMGA2;;chr16:31076332..31076388,-!p3@ZNF668!0.65!3.48!ZNF668;;chr12:77459306..77459365,-!p1@E2F7!0.64!49.86!E2F7;;chr15:101069102..101069112,-!p2@CERS3!0.63!3.29!CERS3;;chr1:201979703..201979721,+!p2@ELF3!0.63!3.29!ELF3;;chr13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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000223;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002076;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002251;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002621;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000161;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000165;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000166;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000344;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001007;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001828;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003350;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003729;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003929;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004807;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005911
|ffid_belonging_in_development=CL:0000223
|ffid_belonging_in_development=CL:0000223
|fonse_cell_line=
|fonse_cell_line=
Line 38: Line 42:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Gingival%2520epithelial%2520cells%252c%2520donor1%2520%2528GEA11%2529.CNhs11061.11221-116B6.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Gingival%2520epithelial%2520cells%252c%2520donor1%2520%2528GEA11%2529.CNhs11061.11221-116B6.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Gingival%2520epithelial%2520cells%252c%2520donor1%2520%2528GEA11%2529.CNhs11061.11221-116B6.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Gingival%2520epithelial%2520cells%252c%2520donor1%2520%2528GEA11%2529.CNhs11061.11221-116B6.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Gingival%2520epithelial%2520cells%252c%2520donor1%2520%2528GEA11%2529.CNhs11061.11221-116B6.hg38.nobarcode.ctss.bed.gz
|id=FF:11221-116B6
|id=FF:11221-116B6
|is_a=EFO:0002091;;FF:0000254
|is_a=EFO:0002091;;FF:0000254
|is_obsolete=
|is_obsolete=
|library_id=CNhs11061
|library_id_phase_based=2:CNhs11061
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11221
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11221
|name=Gingival epithelial cells, donor1 (GEA11)
|name=Gingival epithelial cells, donor1 (GEA11)
|namespace=FANTOM5
|namespace=FANTOM5
Line 46: Line 61:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs11061,LSID723,release008,COMPLETED
|profile_hcage=CNhs11061,LSID723,release008,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
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|sample_cell_line=
Line 83: Line 101:
|top_motifs=TP53:2.51354060436;TBX4,5:2.23929097206;PPARG:1.87480746221;ZEB1:1.84099534906;VSX1,2:1.82496724785;TEF:1.70677458953;ADNP_IRX_SIX_ZHX:1.47160737227;SNAI1..3:1.4423366165;XCPE1{core}:1.19755539368;STAT5{A,B}:1.18495474818;TFCP2:1.17480184535;ONECUT1,2:1.12861760175;NKX2-2,8:1.09966022961;ZNF148:1.09322631178;TEAD1:1.07664276407;PDX1:1.03416252519;SP1:1.03305099871;TBP:0.894509239097;NKX2-3_NKX2-5:0.880513964158;FOXL1:0.86460037127;FOS_FOS{B,L1}_JUN{B,D}:0.864575554019;MYOD1:0.83149684457;bHLH_family:0.744086482869;IKZF1:0.683783614426;FOSL2:0.681841268307;FOXM1:0.663851102616;HAND1,2:0.631085368071;NFIL3:0.62859070993;BACH2:0.592696046184;CDC5L:0.591537139933;PAX1,9:0.574543185264;NKX2-1,4:0.551931475529;TFAP2{A,C}:0.545574861813;MAZ:0.539306056067;SPZ1:0.538529576152;NFIX:0.537669484264;POU3F1..4:0.511343882712;FOXQ1:0.461586035591;NR1H4:0.409647986516;NANOG:0.398283292745;NKX3-2:0.393973407668;ELK1,4_GABP{A,B1}:0.376562617877;ARID5B:0.3760256466;T:0.367426124998;SOX17:0.364740144065;ZNF238:0.339487186862;CRX:0.311741840172;NR5A1,2:0.28734790761;SOX2:0.27856703497;POU1F1:0.275591714851;LMO2:0.267072112024;HIF1A:0.258303077026;HLF:0.228657223201;SMAD1..7,9:0.217791568911;RBPJ:0.205835449782;IRF7:0.194956182246;HSF1,2:0.174718089308;GZF1:0.169100533809;NFE2:0.146196230124;MYBL2:0.136668540844;LEF1_TCF7_TCF7L1,2:0.129312800513;ZIC1..3:0.121479287117;FOX{F1,F2,J1}:0.0971363613654;HOX{A4,D4}:0.0755483862228;GLI1..3:0.073585358837;POU6F1:0.0685800379507;NHLH1,2:0.047443854889;TLX1..3_NFIC{dimer}:0.0455514548816;REST:0.0429036610237;ZBTB6:0.0370252833275;GFI1B:0.0333398830225;OCT4_SOX2{dimer}:0.0237196301945;ZNF143:0.0104358860586;CEBPA,B_DDIT3:-0.00248939450401;PAX2:-0.00597604559632;TLX2:-0.0101390743232;ESR1:-0.0172414346971;FOXO1,3,4:-0.0277908800117;MTF1:-0.0334046542774;ZNF423:-0.0414046876122;ELF1,2,4:-0.0428356204794;EBF1:-0.0545935950339;GTF2A1,2:-0.0696213000107;NFKB1_REL_RELA:-0.0764968024777;UFEwm:-0.0842985550061;FOX{I1,J2}:-0.0846343013131;EP300:-0.121489144078;TFAP2B:-0.125032771599;TFDP1:-0.150594149712;HNF1A:-0.155672463793;GTF2I:-0.160795238264;EVI1:-0.161095123121;EN1,2:-0.180129044899;NRF1:-0.184813034494;KLF4:-0.190611761064;PAX5:-0.192141574654;HES1:-0.202112136472;ETS1,2:-0.220279849111;HOXA9_MEIS1:-0.232874014473;SOX{8,9,10}:-0.248446486446;HIC1:-0.252110268678;FOXN1:-0.256889917862;ZBTB16:-0.275151888082;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.292483623286;LHX3,4:-0.302523081337;JUN:-0.304693601102;NFATC1..3:-0.306321971951;HOX{A6,A7,B6,B7}:-0.31480191661;AR:-0.322159682332;PAX4:-0.324051260817;TFAP4:-0.351805955423;MED-1{core}:-0.356415176282;GFI1:-0.357583378745;SPIB:-0.363140124215;SPI1:-0.380454727061;ZFP161:-0.381307291547;HOX{A5,B5}:-0.388919129114;POU2F1..3:-0.404770733787;HMGA1,2:-0.408871924603;SREBF1,2:-0.417413529472;MTE{core}:-0.424363059732;NFE2L2:-0.429314020326;HMX1:-0.430240761664;HNF4A_NR2F1,2:-0.435330976387;GCM1,2:-0.437161550709;ATF5_CREB3:-0.455253614846;FOXA2:-0.470895737946;PAX6:-0.471470939969;PAX8:-0.477322877254;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.498760793259;PITX1..3:-0.50604837712;SRF:-0.511338446464;GATA6:-0.51655487104;RFX2..5_RFXANK_RFXAP:-0.517620215684;MYFfamily:-0.519488338924;ALX4:-0.523520600958;EGR1..3:-0.526922900481;STAT2,4,6:-0.544452928295;NR3C1:-0.550250612006;E2F1..5:-0.57627308478;IRF1,2:-0.579092102007;MEF2{A,B,C,D}:-0.588309159077;RUNX1..3:-0.597781805561;NFY{A,B,C}:-0.605642696675;DMAP1_NCOR{1,2}_SMARC:-0.611794517012;NKX6-1,2:-0.624427380339;YY1:-0.624726639748;PRRX1,2:-0.625179970559;MAFB:-0.626386435763;RREB1:-0.641975694262;RFX1:-0.651210642456;TGIF1:-0.65981985322;NKX3-1:-0.661560465069;RXR{A,B,G}:-0.662739250734;FOX{D1,D2}:-0.683749037928;AIRE:-0.698702009681;ATF2:-0.718042669947;STAT1,3:-0.765192189924;CDX1,2,4:-0.766952223345;FOXP1:-0.767485257024;BPTF:-0.767785821044;PRDM1:-0.777921295896;FOXD3:-0.781404804214;MYB:-0.791162871692;RORA:-0.795166849728;NFE2L1:-0.802372523517;ATF4:-0.810714952652;CUX2:-0.820342778747;FOXP3:-0.835923713569;POU5F1:-0.887540115846;HBP1_HMGB_SSRP1_UBTF:-0.893971543069;TOPORS:-0.903784495054;ATF6:-0.930035572189;AHR_ARNT_ARNT2:-0.95100373649;NANOG{mouse}:-0.956197704328;CREB1:-0.961575056809;DBP:-0.998427361163;ALX1:-1.01699298135;ESRRA:-1.04271315622;PATZ1:-1.05931459584;ZNF384:-1.0630276985;MZF1:-1.0760818366;PAX3,7:-1.07649561441;GATA4:-1.11779075712;TAL1_TCF{3,4,12}:-1.22045272601;NR6A1:-1.24694276718;PBX1:-1.24719142575;SOX5:-1.34484222882;RXRA_VDR{dimer}:-1.34873453208;IKZF2:-1.40504055684;BREu{core}:-1.50904148017;XBP1:-1.56996798345
|top_motifs=TP53:2.51354060436;TBX4,5:2.23929097206;PPARG:1.87480746221;ZEB1:1.84099534906;VSX1,2:1.82496724785;TEF:1.70677458953;ADNP_IRX_SIX_ZHX:1.47160737227;SNAI1..3:1.4423366165;XCPE1{core}:1.19755539368;STAT5{A,B}:1.18495474818;TFCP2:1.17480184535;ONECUT1,2:1.12861760175;NKX2-2,8:1.09966022961;ZNF148:1.09322631178;TEAD1:1.07664276407;PDX1:1.03416252519;SP1:1.03305099871;TBP:0.894509239097;NKX2-3_NKX2-5:0.880513964158;FOXL1:0.86460037127;FOS_FOS{B,L1}_JUN{B,D}:0.864575554019;MYOD1:0.83149684457;bHLH_family:0.744086482869;IKZF1:0.683783614426;FOSL2:0.681841268307;FOXM1:0.663851102616;HAND1,2:0.631085368071;NFIL3:0.62859070993;BACH2:0.592696046184;CDC5L:0.591537139933;PAX1,9:0.574543185264;NKX2-1,4:0.551931475529;TFAP2{A,C}:0.545574861813;MAZ:0.539306056067;SPZ1:0.538529576152;NFIX:0.537669484264;POU3F1..4:0.511343882712;FOXQ1:0.461586035591;NR1H4:0.409647986516;NANOG:0.398283292745;NKX3-2:0.393973407668;ELK1,4_GABP{A,B1}:0.376562617877;ARID5B:0.3760256466;T:0.367426124998;SOX17:0.364740144065;ZNF238:0.339487186862;CRX:0.311741840172;NR5A1,2:0.28734790761;SOX2:0.27856703497;POU1F1:0.275591714851;LMO2:0.267072112024;HIF1A:0.258303077026;HLF:0.228657223201;SMAD1..7,9:0.217791568911;RBPJ:0.205835449782;IRF7:0.194956182246;HSF1,2:0.174718089308;GZF1:0.169100533809;NFE2:0.146196230124;MYBL2:0.136668540844;LEF1_TCF7_TCF7L1,2:0.129312800513;ZIC1..3:0.121479287117;FOX{F1,F2,J1}:0.0971363613654;HOX{A4,D4}:0.0755483862228;GLI1..3:0.073585358837;POU6F1:0.0685800379507;NHLH1,2:0.047443854889;TLX1..3_NFIC{dimer}:0.0455514548816;REST:0.0429036610237;ZBTB6:0.0370252833275;GFI1B:0.0333398830225;OCT4_SOX2{dimer}:0.0237196301945;ZNF143:0.0104358860586;CEBPA,B_DDIT3:-0.00248939450401;PAX2:-0.00597604559632;TLX2:-0.0101390743232;ESR1:-0.0172414346971;FOXO1,3,4:-0.0277908800117;MTF1:-0.0334046542774;ZNF423:-0.0414046876122;ELF1,2,4:-0.0428356204794;EBF1:-0.0545935950339;GTF2A1,2:-0.0696213000107;NFKB1_REL_RELA:-0.0764968024777;UFEwm:-0.0842985550061;FOX{I1,J2}:-0.0846343013131;EP300:-0.121489144078;TFAP2B:-0.125032771599;TFDP1:-0.150594149712;HNF1A:-0.155672463793;GTF2I:-0.160795238264;EVI1:-0.161095123121;EN1,2:-0.180129044899;NRF1:-0.184813034494;KLF4:-0.190611761064;PAX5:-0.192141574654;HES1:-0.202112136472;ETS1,2:-0.220279849111;HOXA9_MEIS1:-0.232874014473;SOX{8,9,10}:-0.248446486446;HIC1:-0.252110268678;FOXN1:-0.256889917862;ZBTB16:-0.275151888082;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.292483623286;LHX3,4:-0.302523081337;JUN:-0.304693601102;NFATC1..3:-0.306321971951;HOX{A6,A7,B6,B7}:-0.31480191661;AR:-0.322159682332;PAX4:-0.324051260817;TFAP4:-0.351805955423;MED-1{core}:-0.356415176282;GFI1:-0.357583378745;SPIB:-0.363140124215;SPI1:-0.380454727061;ZFP161:-0.381307291547;HOX{A5,B5}:-0.388919129114;POU2F1..3:-0.404770733787;HMGA1,2:-0.408871924603;SREBF1,2:-0.417413529472;MTE{core}:-0.424363059732;NFE2L2:-0.429314020326;HMX1:-0.430240761664;HNF4A_NR2F1,2:-0.435330976387;GCM1,2:-0.437161550709;ATF5_CREB3:-0.455253614846;FOXA2:-0.470895737946;PAX6:-0.471470939969;PAX8:-0.477322877254;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.498760793259;PITX1..3:-0.50604837712;SRF:-0.511338446464;GATA6:-0.51655487104;RFX2..5_RFXANK_RFXAP:-0.517620215684;MYFfamily:-0.519488338924;ALX4:-0.523520600958;EGR1..3:-0.526922900481;STAT2,4,6:-0.544452928295;NR3C1:-0.550250612006;E2F1..5:-0.57627308478;IRF1,2:-0.579092102007;MEF2{A,B,C,D}:-0.588309159077;RUNX1..3:-0.597781805561;NFY{A,B,C}:-0.605642696675;DMAP1_NCOR{1,2}_SMARC:-0.611794517012;NKX6-1,2:-0.624427380339;YY1:-0.624726639748;PRRX1,2:-0.625179970559;MAFB:-0.626386435763;RREB1:-0.641975694262;RFX1:-0.651210642456;TGIF1:-0.65981985322;NKX3-1:-0.661560465069;RXR{A,B,G}:-0.662739250734;FOX{D1,D2}:-0.683749037928;AIRE:-0.698702009681;ATF2:-0.718042669947;STAT1,3:-0.765192189924;CDX1,2,4:-0.766952223345;FOXP1:-0.767485257024;BPTF:-0.767785821044;PRDM1:-0.777921295896;FOXD3:-0.781404804214;MYB:-0.791162871692;RORA:-0.795166849728;NFE2L1:-0.802372523517;ATF4:-0.810714952652;CUX2:-0.820342778747;FOXP3:-0.835923713569;POU5F1:-0.887540115846;HBP1_HMGB_SSRP1_UBTF:-0.893971543069;TOPORS:-0.903784495054;ATF6:-0.930035572189;AHR_ARNT_ARNT2:-0.95100373649;NANOG{mouse}:-0.956197704328;CREB1:-0.961575056809;DBP:-0.998427361163;ALX1:-1.01699298135;ESRRA:-1.04271315622;PATZ1:-1.05931459584;ZNF384:-1.0630276985;MZF1:-1.0760818366;PAX3,7:-1.07649561441;GATA4:-1.11779075712;TAL1_TCF{3,4,12}:-1.22045272601;NR6A1:-1.24694276718;PBX1:-1.24719142575;SOX5:-1.34484222882;RXRA_VDR{dimer}:-1.34873453208;IKZF2:-1.40504055684;BREu{core}:-1.50904148017;XBP1:-1.56996798345
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11221-116B6;search_select_hide=table117:FF:11221-116B6
}}
}}

Latest revision as of 16:25, 3 June 2020

Name:Gingival epithelial cells, donor1 (GEA11)
Species:Human (Homo sapiens)
Library ID:CNhs11061
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuegum
dev stage61 years old adult
sexfemale
age61
cell typeepithelial cell
cell lineNA
companyN/A
collaborationMitsuhiro Ohshima (Nihon University School of Dentistry)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberN/A
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005665
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11061 CAGE DRX008293 DRR009165
Accession ID Hg19

Library idBAMCTSS
CNhs11061 DRZ000590 DRZ001975
Accession ID Hg38

Library idBAMCTSS
CNhs11061 DRZ011940 DRZ013325
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.1
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.0845
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.249
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.126
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.227
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0.0767
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.176
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0.569
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.182
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal1.1
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.238
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0.632
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.196
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.294
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.294
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.219
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11061

Jaspar motifP-value
MA0002.20.936
MA0003.10.508
MA0004.10.367
MA0006.10.0147
MA0007.10.991
MA0009.10.0886
MA0014.10.102
MA0017.10.764
MA0018.21.00125e-4
MA0019.10.363
MA0024.10.00116
MA0025.10.122
MA0027.10.253
MA0028.10.483
MA0029.10.369
MA0030.10.765
MA0031.10.762
MA0035.20.423
MA0038.10.197
MA0039.20.00117
MA0040.10.417
MA0041.10.346
MA0042.10.901
MA0043.10.00376
MA0046.10.742
MA0047.20.369
MA0048.10.673
MA0050.10.0116
MA0051.10.212
MA0052.10.0592
MA0055.10.0359
MA0057.10.153
MA0058.10.215
MA0059.10.589
MA0060.10.0148
MA0061.10.944
MA0062.20.852
MA0065.20.646
MA0066.10.0676
MA0067.10.0396
MA0068.10.239
MA0069.10.844
MA0070.10.745
MA0071.10.184
MA0072.10.854
MA0073.10.864
MA0074.10.54
MA0076.10.824
MA0077.10.193
MA0078.10.722
MA0079.20.174
MA0080.20.043
MA0081.10.257
MA0083.10.359
MA0084.10.0781
MA0087.10.84
MA0088.10.905
MA0090.18.98103e-6
MA0091.10.0568
MA0092.10.524
MA0093.10.345
MA0099.23.04024e-21
MA0100.10.073
MA0101.10.66
MA0102.20.376
MA0103.16.56969e-7
MA0104.20.137
MA0105.10.63
MA0106.13.02377e-11
MA0107.10.518
MA0108.20.668
MA0111.10.747
MA0112.20.225
MA0113.10.818
MA0114.10.562
MA0115.10.548
MA0116.10.842
MA0117.10.512
MA0119.10.816
MA0122.10.863
MA0124.10.434
MA0125.10.0491
MA0131.10.656
MA0135.10.648
MA0136.10.988
MA0137.20.445
MA0138.20.67
MA0139.10.629
MA0140.10.627
MA0141.10.266
MA0142.10.778
MA0143.10.68
MA0144.10.472
MA0145.10.0284
MA0146.10.168
MA0147.10.208
MA0148.10.24
MA0149.10.0659
MA0150.10.124
MA0152.10.254
MA0153.10.483
MA0154.10.41
MA0155.10.861
MA0156.10.941
MA0157.10.384
MA0159.10.6
MA0160.10.58
MA0162.10.131
MA0163.10.482
MA0164.10.836
MA0258.10.789
MA0259.10.15



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11061

Novel motifP-value
10.674
100.49
1000.972
1010.0281
1020.356
1030.0775
1040.715
1050.254
1060.0452
1070.0869
1080.531
1090.00617
110.527
1100.541
1110.447
1120.236
1130.128
1140.378
1150.858
1160.635
1170.387
1180.892
1190.273
120.931
1200.0526
1210.392
1220.0595
1230.143
1240.0108
1250.898
1260.404
1270.462
1280.482
1290.128
130.169
1300.875
1310.251
1320.463
1330.0303
1340.481
1350.697
1360.00829
1370.351
1380.906
1390.673
140.703
1400.88
1410.965
1420.671
1430.667
1440.264
1450.0945
1460.0295
1470.199
1480.834
1490.993
150.829
1500.13
1510.473
1520.00515
1530.618
1540.779
1550.771
1560.969
1570.544
1580.101
1590.352
160.0682
1600.578
1610.82
1620.268
1630.254
1640.759
1650.0832
1660.334
1670.0593
1680.145
1690.132
170.376
180.556
190.658
20.223
200.777
210.583
220.302
230.296
240.00729
250.988
260.613
270.4
280.625
290.674
30.603
300.0623
310.803
320.162
330.12
340.958
350.0781
360.616
370.163
380.588
390.202
40.646
400.0524
410.998
420.746
430.685
440.442
450.0299
460.885
470.662
480.219
490.383
50.945
500.307
510.824
520.125
530.448
540.701
550.0913
560.289
570.752
580.98
590.309
60.422
600.139
610.65
620.528
630.137
640.898
650.781
660.638
670.557
680.0619
690.263
70.311
700.0611
710.857
720.529
730.00109
740.0434
750.436
760.811
770.00578
780.0281
790.53
80.729
800.924
810.388
820.597
830.831
840.971
850.382
860.79
870.0027
880.899
890.0541
90.924
900.567
910.986
920.932
930.998
940.211
950.109
960.542
970.346
980.862
990.0665



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11061


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002251 (epithelial cell of alimentary canal)
0002621 (gingival epithelial cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000483 (epithelium)
0000033 (head)
0000479 (tissue)
0001007 (digestive system)
0000344 (mucosa)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0005911 (endo-epithelium)
0004923 (organ component layer)
0000161 (orifice)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0010371 (ecto-epithelium)
0003350 (epithelium of mucosa)
0003929 (gut epithelium)
0000486 (multilaminar epithelium)
0004807 (respiratory system epithelium)
0003729 (mouth mucosa)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0001828 (gingiva)
0001949 (gingival epithelium)
0001004 (respiratory system)
0000153 (anterior region of body)
0007811 (craniocervical region)
0000165 (mouth)
0000166 (oral opening)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000254 (human gingival epithelial cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000223 (endodermal cell)

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