FFCP PHASE1:Hg19::chr2:21234737..21234744,-: Difference between revisions
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|id=chr2:21234737..21234744,-
|short_description=p116@APOB
|description=CAGE_peak_116_at_APOB_5end
|association_with_transcript=-8bp_to_M17367_5end
|EntrezGene=338...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=338 | |EntrezGene=338 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=603 | |HGNC=603 | ||
|TSSclassifier=strong | |||
|UniProt=P04114 | |UniProt=P04114 | ||
|association_with_transcript=-8bp_to_M17367_5end | |||
|cluster_id=chr2:21234737..21234744,- | |||
|coexpression_cluster_id=C129 | |||
|description=CAGE_peak_116_at_APOB_5end | |||
|id=chr2:21234737..21234744,- | |||
|ontology_enrichment_celltype=CL:0000181!1.05e-20!12;CL:0000417!1.05e-20!12;CL:0000668!1.05e-20!12;CL:0000414!1.05e-20!12;CL:0000412!1.05e-20!12;CL:0000182!1.05e-20!12 | |||
|ontology_enrichment_celltype_v019=CL:0000182;8.14e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,8.38e-07,12 | |||
|ontology_enrichment_development_v019=UBERON:0004161;2.32e-07;11 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002107!7.05e-29!19;UBERON:0006925!7.05e-29!19;UBERON:0008836!7.05e-29!19;UBERON:0008835!6.25e-25!22;UBERON:0003894!6.25e-25!22;UBERON:0009854!7.66e-24!23;UBERON:0007499!6.31e-22!25;UBERON:0009497!6.31e-22!25;UBERON:0000015!6.31e-22!25;UBERON:0002423!6.31e-22!25;UBERON:0006235!6.31e-22!25;UBERON:0004161!6.31e-22!25;UBERON:0005057!4.44e-21!26;UBERON:0009856!4.44e-21!26;UBERON:0002368!5.43e-21!35;UBERON:0002365!1.17e-17!31;UBERON:0002330!1.17e-17!31;UBERON:0003929!1.76e-17!54;UBERON:0000949!3.03e-16!45;UBERON:0002530!2.72e-12!59;UBERON:0005911!2.66e-11!82;UBERON:0005172!7.38e-10!55;UBERON:0005173!7.38e-10!55;UBERON:0002417!7.32e-09!61;UBERON:0000916!7.32e-09!61;UBERON:0001007!7.47e-09!155;UBERON:0001555!7.47e-09!155;UBERON:0007026!7.47e-09!155;UBERON:0004921!9.75e-09!129;UBERON:0004185!9.75e-09!129;UBERON:0004119!4.88e-08!169;UBERON:0000925!4.88e-08!169;UBERON:0006595!4.88e-08!169 | |||
|ontology_enrichment_uberon_v019=UBERON:0002107;5.09e-15;19!UBERON:0006925;5.09e-15;19!UBERON:0002423;1.06e-11;25!UBERON:0002368;6.09e-10;33!UBERON:0002365;2.74e-09;31!UBERON:0002330;2.74e-09;31 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,5.27e-15,19;UBERON:0006925,5.27e-15,19;UBERON:0008836,5.27e-15,19;UBERON:0008835,4.01e-13,22;UBERON:0003894,4.01e-13,22;UBERON:0009854,1.33e-12,23;UBERON:0007499,1.09e-11,25;UBERON:0009497,1.09e-11,25;UBERON:0000015,1.09e-11,25;UBERON:0002423,1.09e-11,25;UBERON:0006235,1.09e-11,25;UBERON:0004161,1.09e-11,25;UBERON:0009856,2.77e-11,26;UBERON:0002365,1.20e-09,31;UBERON:0002330,1.20e-09,31;UBERON:0002368,1.14e-08,35;UBERON:0000949,5.58e-07,45 | |||
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|short_description=p116@APOB | |||
}} | }} |
Latest revision as of 23:43, 19 September 2015
Short description: | p116@APOB |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_116_at_APOB_5end |
Coexpression cluster: | C129_liver_Hepatocyte_colon_duodenum_temporal_testicular_small |
Association with transcript: | -8bp_to_M17367_5end |
EntrezGene: | APOB |
HGNC: | 603 |
UniProt: | P04114 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 8.38e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
liver | 5.27e-15 | 19 |
digestive gland | 5.27e-15 | 19 |
liver bud | 5.27e-15 | 19 |
hepatic diverticulum | 4.01e-13 | 22 |
liver primordium | 4.01e-13 | 22 |
digestive tract diverticulum | 1.33e-12 | 23 |
epithelial sac | 1.09e-11 | 25 |
epithelium of foregut-midgut junction | 1.09e-11 | 25 |
anatomical boundary | 1.09e-11 | 25 |
hepatobiliary system | 1.09e-11 | 25 |
foregut-midgut junction | 1.09e-11 | 25 |
septum transversum | 1.09e-11 | 25 |
sac | 2.77e-11 | 26 |
exocrine gland | 1.20e-09 | 31 |
exocrine system | 1.20e-09 | 31 |
endocrine gland | 1.14e-08 | 35 |
endocrine system | 5.58e-07 | 45 |