FFCP PHASE1:Mm9::chr2:179759656..179759712,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=241846 | |EntrezGene=241846 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=22 | |MCL_coexpression_id=22 | ||
|TSSclassifier=NA | |||
|UniProt=Q8CGC4,Q8BM41,Q4KL69 | |UniProt=Q8CGC4,Q8BM41,Q4KL69 | ||
|association_with_transcript=0bp_to_ENSMUST00000055485,ENSMUST00000164284,NM_177727,uc008ohy.1_5end | |association_with_transcript=0bp_to_ENSMUST00000055485,ENSMUST00000164284,NM_177727,uc008ohy.1_5end | ||
|cluster_id=chr2:179759656..179759712,+ | |||
|description=CAGE_peak_1_at_Lsm14b_5end | |description=CAGE_peak_1_at_Lsm14b_5end | ||
|id=chr2:179759656..179759712,+ | |id=chr2:179759656..179759712,+ | ||
|ontology_enrichment_celltype=CL:0002319!5.21e-17!43;CL:0000221!5.89e-17!44;CL:0000133!5.89e-17!44;CL:0000540!1.63e-14!33;CL:0000047!1.63e-14!33;CL:0000031!1.63e-14!33;CL:0000404!1.63e-14!33;CL:0000117!1.37e-13!23;CL:0000337!1.37e-13!23;CL:0000055!3.98e-13!50;CL:0000393!2.88e-11!39;CL:0000211!2.88e-11!39;CL:0002321!1.95e-08!70;CL:0000220!1.95e-08!70 | |ontology_enrichment_celltype=CL:0002319!5.21e-17!43;CL:0000221!5.89e-17!44;CL:0000133!5.89e-17!44;CL:0000540!1.63e-14!33;CL:0000047!1.63e-14!33;CL:0000031!1.63e-14!33;CL:0000404!1.63e-14!33;CL:0000117!1.37e-13!23;CL:0000337!1.37e-13!23;CL:0000055!3.98e-13!50;CL:0000393!2.88e-11!39;CL:0000211!2.88e-11!39;CL:0002321!1.95e-08!70;CL:0000220!1.95e-08!70 | ||
|ontology_enrichment_celltype_v019_2=CL:0002319,5.21e-17,43;CL:0000221,5.89e-17,44;CL:0000133,5.89e-17,44;CL:0000540,1.63e-14,33;CL:0000047,1.63e-14,33;CL:0000031,1.63e-14,33;CL:0000404,1.63e-14,33;CL:0000117,1.37e-13,23;CL:0000337,1.37e-13,23;CL:0000393,2.88e-11,39;CL:0000211,2.88e-11,39;CL:0002321,1.95e-08,70 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!3.15e-31!75;UBERON:0001016!3.15e-31!75;UBERON:0001017!1.96e-30!73;UBERON:0005743!1.96e-30!73;UBERON:0004121!7.44e-26!102;UBERON:0000924!7.44e-26!102;UBERON:0006601!7.44e-26!102;UBERON:0000033!4.50e-24!63;UBERON:0001049!2.37e-22!52;UBERON:0005068!2.37e-22!52;UBERON:0006241!2.37e-22!52;UBERON:0007135!2.37e-22!52;UBERON:0003056!1.72e-21!49;UBERON:0000955!5.25e-21!50;UBERON:0006238!5.25e-21!50;UBERON:0002346!7.02e-21!71;UBERON:0003075!7.02e-21!71;UBERON:0007284!7.02e-21!71;UBERON:0002616!1.89e-20!49;UBERON:0000153!1.88e-19!94;UBERON:0007811!5.79e-19!86;UBERON:0002020!6.20e-19!34;UBERON:0003080!1.76e-18!40;UBERON:0002780!4.40e-18!39;UBERON:0001890!4.40e-18!39;UBERON:0006240!4.40e-18!39;UBERON:0002791!6.53e-16!29;UBERON:0003528!6.53e-16!29;UBERON:0001893!6.53e-16!29;UBERON:0000956!2.62e-12!21;UBERON:0001869!2.62e-12!21;UBERON:0000203!2.62e-12!21;UBERON:0002619!9.17e-10!17;UBERON:0000479!2.28e-07!349;UBERON:0004111!5.53e-07!122;UBERON:0000025!6.33e-07!114 | |ontology_enrichment_uberon=UBERON:0000073!3.15e-31!75;UBERON:0001016!3.15e-31!75;UBERON:0001017!1.96e-30!73;UBERON:0005743!1.96e-30!73;UBERON:0004121!7.44e-26!102;UBERON:0000924!7.44e-26!102;UBERON:0006601!7.44e-26!102;UBERON:0000033!4.50e-24!63;UBERON:0001049!2.37e-22!52;UBERON:0005068!2.37e-22!52;UBERON:0006241!2.37e-22!52;UBERON:0007135!2.37e-22!52;UBERON:0003056!1.72e-21!49;UBERON:0000955!5.25e-21!50;UBERON:0006238!5.25e-21!50;UBERON:0002346!7.02e-21!71;UBERON:0003075!7.02e-21!71;UBERON:0007284!7.02e-21!71;UBERON:0002616!1.89e-20!49;UBERON:0000153!1.88e-19!94;UBERON:0007811!5.79e-19!86;UBERON:0002020!6.20e-19!34;UBERON:0003080!1.76e-18!40;UBERON:0002780!4.40e-18!39;UBERON:0001890!4.40e-18!39;UBERON:0006240!4.40e-18!39;UBERON:0002791!6.53e-16!29;UBERON:0003528!6.53e-16!29;UBERON:0001893!6.53e-16!29;UBERON:0000956!2.62e-12!21;UBERON:0001869!2.62e-12!21;UBERON:0000203!2.62e-12!21;UBERON:0002619!9.17e-10!17;UBERON:0000479!2.28e-07!349;UBERON:0004111!5.53e-07!122;UBERON:0000025!6.33e-07!114 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,3.15e-31,75;UBERON:0004121,1.78e-30,95;UBERON:0000924,1.78e-30,95;UBERON:0006601,1.78e-30,95;UBERON:0001017,1.96e-30,73;UBERON:0002346,3.49e-26,64;UBERON:0003075,3.49e-26,64;UBERON:0007284,3.49e-26,64;UBERON:0000073,1.29e-23,54;UBERON:0010371,1.58e-22,73;UBERON:0001049,2.37e-22,52;UBERON:0005068,2.37e-22,52;UBERON:0006241,2.37e-22,52;UBERON:0007135,2.37e-22,52;UBERON:0003056,1.72e-21,49;UBERON:0000955,1.29e-19,47;UBERON:0006238,1.29e-19,47;UBERON:0002616,4.54e-19,46;UBERON:0010314,5.26e-19,92;UBERON:0002020,6.20e-19,34;UBERON:0003080,1.76e-18,40;UBERON:0002780,4.40e-18,39;UBERON:0001890,4.40e-18,39;UBERON:0006240,4.40e-18,39;UBERON:0003528,6.53e-16,29;UBERON:0002791,6.53e-16,29;UBERON:0001893,6.53e-16,29;UBERON:0000956,2.62e-12,21;UBERON:0001869,2.62e-12,21;UBERON:0000203,2.62e-12,21;UBERON:0002619,9.17e-10,17;UBERON:0000479,2.28e-07,349;UBERON:0004111,5.53e-07,122;UBERON:0000025,6.33e-07,114 | |||
|phase1_expression=77.9924885400347,32.4547129104606,47.3199208965117,67.7519833327299,69.1236107325959,36.9334398206158,35.5091213705199,56.9433856377351,40.4063632575284,40.0250340010609,43.4893639292783,44.114003924421,69.3362956221383,56.8232615723483,38.9738421324325,31.7886169802027,31.4802845157666,36.4358800988765,40.9972156481159,39.8926272690148,60.0405628466553,64.5391182805754,48.0607612015641,33.7584012094088,38.0819406571502,32.1569899904411,32.7379117080897,26.9339040857361,43.705386474966,29.7395553116718,20.6209374909433,82.5539875497521,84.2638758990861,110.937176710807,24.2635360591071,29.5897668738116,32.4629276457167,32.6454671974788,27.346737058333,10.9939986234498,27.0586484494267,25.9557284284209,24.7610280045888,47.0854099228659,42.1728033873181,55.0640256485045,68.0680469582794,104.652075062614,90.2910211038679,97.2149495371417,99.1103865107567,184.003282387164,40.2678254538567,53.6767985088395,60.832977644786,68.4310099855619,73.3525606243217,76.8351417493389,271.104057551861,260.26356180184,335.296812454769,69.8019736062412,98.7117223683365,53.0940833196025,77.131576280224,56.1279290807419,123.734845644101,123.718294313541,257.876065811184,303.493349369641,289.19682185815,170.533637689071,162.338377599436,290.058212541011,224.182556711655,465.124706024671,156.364551019132,124.878216647314,106.449327546577,326.154789556769,225.882992054349,266.186732354504,104.693624625518,96.2324063154173,88.1645889672194,209.480924271778,153.334300220634,238.591290656385,92.3102296731514,137.389096274136,51.306014500197,43.8816177260507,55.0776780303278,52.8909127805061,62.3785360749762,69.8921943871843,67.5537660833727,56.9237277410713,60.2703530678656,74.2013106471715,80.9849663715913,73.1460921261612,117.210410265057,206.209343914466,112.575341325831,106.664503365017,109.698804568208,56.9777559798109,65.2523466790873,50.3218851429756,61.4138056752121,59.6752337491797,52.3497178771253,46.724018571313,45.9771844900606,50.1409699405405,33.6185156118748,67.8170983954386,53.9612436689423,47.7212207344857,49.0268170982074,48.9724005666574,65.2371164263428,122.675153947838,112.263434852012,55.6896380354729,20.2487560415005,16.7972764678154,15.3754974758408,115.189001702309,201.300265240196,252.188284690519,170.347833788431,143.967802476976,115.322364730556,118.111639513328,67.0103014135081,45.7817651845142,85.1675695921484,98.9076722666428,109.171051645708,104.145653308363,123.342558916664,99.6158845894077,112.940588591204,110.818368046395,125.466609185477,93.6506202075237,149.173051109527,127.079285872775,112.080866092435,92.281403352009,78.4093242816186,57.8098596426796,54.9438304209209,91.1576942028699,17.5553296828309,16.4702660553418,23.017243451043,79.9505481987037,63.0875101349149,59.7806044050569,75.2848259160969,77.7218715402245,70.8086048153066,71.3879210383752,75.9213725960922,66.7897758340209,58.912426269026,71.7411818025646,88.5271400240745,80.8485930462088,98.1389015350996,100.789020489039,136.267886669554,234.622516224769,53.8582616263591,49.7167065327463,117.308537794379,95.4492721346402,68.0420195780653,51.832665828199,52.7035963912343,40.3278327358625,37.9623249235609,34.7514794467663,41.7216446608447,36.2100779114894,41.5273505563726,35.9527763461689,31.5561552817054,42.2179499299258,107.162364038491,90.2563249616858,104.818194175965,82.6824391051976,80.4902821745647,66.6290288958026,65.0071601637365,60.8153809675961,64.3694784149637,66.6344685177723,60.4763359257784,54.0578142520145,50.7122207392064,38.45142121781,45.2378070696361,42.4471801164254,42.0132655439343,56.3884429403589,46.5328100844352,28.2798255583724,99.2000625038746,41.6797861388724,41.8130481973511,49.0003023217397,41.9789947641274,58.3756660849674,78.7048590109736,109.715527415111,74.4749942340058,83.6843272871677,79.5599941698022,65.9974654320754,71.6511359066901,66.1503066237938,62.4235170660516,62.010113101657,60.1144477838726,63.0873761655591,54.2230843058912,56.557781905371,57.3006878969235,71.7955502640697,64.4211197654937,70.6398070540115,89.7477798031757,78.0629832704073,85.5740414866246,101.240841808954,94.3369576054608,89.4104724439302,98.4484927638891,89.8522680301596,97.5858192480886,127.667515385763,82.5813831416784,97.9057124002895,95.6596422630587,144.594592389813,77.4992865237147,91.7037858886364,91.2166972380026,101.786565874054,144.692200790559,64.0940879449151,59.2554171650912,51.1119766138484,59.6509823619161,65.7911216600005,52.9778000994853,54.5300594216258,58.1090726767096,74.5846748728526,90.6600033744989,88.6965671934407,75.5775924773409,117.759955496477,134.79174850163,108.883213796049,103.034675746161,87.9358270778208,85.0718436512965,103.213617749849,54.2091645627171,54.0171780702741,71.8922577659176,79.4751739177934,64.5857706783622,54.1006936605558,50.733246201333,53.8382151163801,42.5562021479582,93.4543522132969,44.084687245846,61.9160603889667,47.2246044792765,34.8481645458678,36.7707472569558,34.5455041541849,27.1965487990168,29.9496107972628,26.5343949704494,91.6483793294509,124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|phase1_expression=77.9924885400347,32.4547129104606,47.3199208965117,67.7519833327299,69.1236107325959,36.9334398206158,35.5091213705199,56.9433856377351,40.4063632575284,40.0250340010609,43.4893639292783,44.114003924421,69.3362956221383,56.8232615723483,38.9738421324325,31.7886169802027,31.4802845157666,36.4358800988765,40.9972156481159,39.8926272690148,60.0405628466553,64.5391182805754,48.0607612015641,33.7584012094088,38.0819406571502,32.1569899904411,32.7379117080897,26.9339040857361,43.705386474966,29.7395553116718,20.6209374909433,82.5539875497521,84.2638758990861,110.937176710807,24.2635360591071,29.5897668738116,32.4629276457167,32.6454671974788,27.346737058333,10.9939986234498,27.0586484494267,25.9557284284209,24.7610280045888,47.0854099228659,42.1728033873181,55.0640256485045,68.0680469582794,104.652075062614,90.2910211038679,97.2149495371417,99.1103865107567,184.003282387164,40.2678254538567,53.6767985088395,60.832977644786,68.4310099855619,73.3525606243217,76.8351417493389,271.104057551861,260.26356180184,335.296812454769,69.8019736062412,98.7117223683365,53.0940833196025,77.131576280224,56.1279290807419,123.734845644101,123.718294313541,257.876065811184,303.493349369641,289.19682185815,170.533637689071,162.338377599436,290.058212541011,224.182556711655,465.124706024671,156.364551019132,124.878216647314,106.449327546577,326.154789556769,225.882992054349,266.186732354504,104.693624625518,96.2324063154173,88.1645889672194,209.480924271778,153.334300220634,238.591290656385,92.3102296731514,137.389096274136,51.306014500197,43.8816177260507,55.0776780303278,52.8909127805061,62.3785360749762,69.8921943871843,67.5537660833727,56.9237277410713,60.2703530678656,74.2013106471715,80.9849663715913,73.1460921261612,117.210410265057,206.209343914466,112.575341325831,106.664503365017,109.698804568208,56.9777559798109,65.2523466790873,50.3218851429756,61.4138056752121,59.6752337491797,52.3497178771253,46.724018571313,45.9771844900606,50.1409699405405,33.6185156118748,67.8170983954386,53.9612436689423,47.7212207344857,49.0268170982074,48.9724005666574,65.2371164263428,122.675153947838,112.263434852012,55.6896380354729,20.2487560415005,16.7972764678154,15.3754974758408,115.189001702309,201.300265240196,252.188284690519,170.347833788431,143.967802476976,115.322364730556,118.111639513328,67.0103014135081,45.7817651845142,85.1675695921484,98.9076722666428,109.171051645708,104.145653308363,123.342558916664,99.6158845894077,112.940588591204,110.818368046395,125.466609185477,93.6506202075237,149.173051109527,127.079285872775,112.080866092435,92.281403352009,78.4093242816186,57.8098596426796,54.9438304209209,91.1576942028699,17.5553296828309,16.4702660553418,23.017243451043,79.9505481987037,63.0875101349149,59.7806044050569,75.2848259160969,77.7218715402245,70.8086048153066,71.3879210383752,75.9213725960922,66.7897758340209,58.912426269026,71.7411818025646,88.5271400240745,80.8485930462088,98.1389015350996,100.789020489039,136.267886669554,234.622516224769,53.8582616263591,49.7167065327463,117.308537794379,95.4492721346402,68.0420195780653,51.832665828199,52.7035963912343,40.3278327358625,37.9623249235609,34.7514794467663,41.7216446608447,36.2100779114894,41.5273505563726,35.9527763461689,31.5561552817054,42.2179499299258,107.162364038491,90.2563249616858,104.818194175965,82.6824391051976,80.4902821745647,66.6290288958026,65.0071601637365,60.8153809675961,64.3694784149637,66.6344685177723,60.4763359257784,54.0578142520145,50.7122207392064,38.45142121781,45.2378070696361,42.4471801164254,42.0132655439343,56.3884429403589,46.5328100844352,28.2798255583724,99.2000625038746,41.6797861388724,41.8130481973511,49.0003023217397,41.9789947641274,58.3756660849674,78.7048590109736,109.715527415111,74.4749942340058,83.6843272871677,79.5599941698022,65.9974654320754,71.6511359066901,66.1503066237938,62.4235170660516,62.010113101657,60.1144477838726,63.0873761655591,54.2230843058912,56.557781905371,57.3006878969235,71.7955502640697,64.4211197654937,70.6398070540115,89.7477798031757,78.0629832704073,85.5740414866246,101.240841808954,94.3369576054608,89.4104724439302,98.4484927638891,89.8522680301596,97.5858192480886,127.667515385763,82.5813831416784,97.9057124002895,95.6596422630587,144.594592389813,77.4992865237147,91.7037858886364,91.2166972380026,101.786565874054,144.692200790559,64.0940879449151,59.2554171650912,51.1119766138484,59.6509823619161,65.7911216600005,52.9778000994853,54.5300594216258,58.1090726767096,74.5846748728526,90.6600033744989,88.6965671934407,75.5775924773409,117.759955496477,134.79174850163,108.883213796049,103.034675746161,87.9358270778208,85.0718436512965,103.213617749849,54.2091645627171,54.0171780702741,71.8922577659176,79.4751739177934,64.5857706783622,54.1006936605558,50.733246201333,53.8382151163801,42.5562021479582,93.4543522132969,44.084687245846,61.9160603889667,47.2246044792765,34.8481645458678,36.7707472569558,34.5455041541849,27.1965487990168,29.9496107972628,26.5343949704494,91.6483793294509,124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| ||
|short_description=p1@Lsm14b | |short_description=p1@Lsm14b | ||
}} | }} |
Latest revision as of 07:15, 26 September 2015
Short description: | p1@Lsm14b |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Lsm14b_5end |
Coexpression cluster: | MCL_coexpression_mm9:22 |
Association with transcript: | 0bp_to_ENSMUST00000055485, ENSMUST00000164284, NM_177727, uc008ohy.1_5end |
EntrezGene: | Lsm14b |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 5.21e-17 | 43 |
ectodermal cell | 5.89e-17 | 44 |
neurectodermal cell | 5.89e-17 | 44 |
neuron | 1.63e-14 | 33 |
neuronal stem cell | 1.63e-14 | 33 |
neuroblast | 1.63e-14 | 33 |
electrically signaling cell | 1.63e-14 | 33 |
CNS neuron (sensu Vertebrata) | 1.37e-13 | 23 |
neuroblast (sensu Vertebrata) | 1.37e-13 | 23 |
electrically responsive cell | 2.88e-11 | 39 |
electrically active cell | 2.88e-11 | 39 |
embryonic cell | 1.95e-08 | 70 |
Ontology term | p-value | n |
---|---|---|
nervous system | 3.15e-31 | 75 |
ectoderm-derived structure | 1.78e-30 | 95 |
ectoderm | 1.78e-30 | 95 |
presumptive ectoderm | 1.78e-30 | 95 |
central nervous system | 1.96e-30 | 73 |
neurectoderm | 3.49e-26 | 64 |
neural plate | 3.49e-26 | 64 |
presumptive neural plate | 3.49e-26 | 64 |
regional part of nervous system | 1.29e-23 | 54 |
ecto-epithelium | 1.58e-22 | 73 |
neural tube | 2.37e-22 | 52 |
neural rod | 2.37e-22 | 52 |
future spinal cord | 2.37e-22 | 52 |
neural keel | 2.37e-22 | 52 |
pre-chordal neural plate | 1.72e-21 | 49 |
brain | 1.29e-19 | 47 |
future brain | 1.29e-19 | 47 |
regional part of brain | 4.54e-19 | 46 |
structure with developmental contribution from neural crest | 5.26e-19 | 92 |
gray matter | 6.20e-19 | 34 |
anterior neural tube | 1.76e-18 | 40 |
regional part of forebrain | 4.40e-18 | 39 |
forebrain | 4.40e-18 | 39 |
future forebrain | 4.40e-18 | 39 |
brain grey matter | 6.53e-16 | 29 |
regional part of telencephalon | 6.53e-16 | 29 |
telencephalon | 6.53e-16 | 29 |
cerebral cortex | 2.62e-12 | 21 |
cerebral hemisphere | 2.62e-12 | 21 |
pallium | 2.62e-12 | 21 |
regional part of cerebral cortex | 9.17e-10 | 17 |
tissue | 2.28e-07 | 349 |
anatomical conduit | 5.53e-07 | 122 |
tube | 6.33e-07 | 114 |