FFCP PHASE1:Hg19::chr2:33359634..33359645,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr2:33359634..33359645,+
|short_description=p5@LTBP1
|description=CAGE_peak_5_at_LTBP1_5end
|association_with_transcript=-18bp_to_ENST00000390003,ENST000004185...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=4052 | |EntrezGene=4052 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6714 | |HGNC=6714 | ||
|TSSclassifier=strong | |||
|UniProt=E7EV71,Q14766,B7ZLY3 | |UniProt=E7EV71,Q14766,B7ZLY3 | ||
|association_with_transcript=-18bp_to_ENST00000390003,ENST00000418533,NM_000627,NM_001166264,NM_001166265,NM_001166266_5end | |||
|cluster_id=chr2:33359634..33359645,+ | |||
|coexpression_cluster_id=C2697 | |||
|description=CAGE_peak_5_at_LTBP1_5end | |||
|id=chr2:33359634..33359645,+ | |||
|ontology_enrichment_celltype=CL:0000055!2.42e-31!180;CL:0000680!1.05e-20!57;CL:0000056!1.05e-20!57;CL:0000355!1.05e-20!57;CL:0000187!6.95e-20!54;CL:0000057!8.53e-19!75;CL:0000192!1.62e-18!42;CL:0000514!1.62e-18!42;CL:0000183!3.37e-18!59;CL:0000359!2.29e-16!32;CL:0000393!3.24e-15!60;CL:0000211!3.24e-15!60;CL:0002620!1.01e-08!23;CL:0000222!2.79e-08!119;CL:0002539!8.10e-07!10 | |||
|ontology_enrichment_celltype_v019=CL:0000359;1.99e-16;32!CL:0000192;8.64e-15;43!CL:0000187;9.14e-12;55!CL:0002620;2.13e-09;23!CL:0000057;2.73e-09;73!CL:0000393;3.51e-09;61!CL:0000211;3.51e-09;61!CL:0002539;6.51e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000680,3.63e-23,58;CL:0000056,3.63e-23,58;CL:0000355,3.63e-23,58;CL:0000187,3.41e-22,55;CL:0000057,6.50e-21,76;CL:0000192,2.91e-20,43;CL:0000514,2.91e-20,43;CL:0000393,6.50e-18,61;CL:0000211,6.50e-18,61;CL:0000359,1.86e-17,32;CL:0000222,1.06e-09,121;CL:0002620,1.96e-09,23;CL:0000723,2.60e-07,433;CL:0000048,2.78e-07,427;CL:0002539,6.51e-07,10 | |||
|ontology_enrichment_development_v019=CL:0000514;8.64e-15;43!CL:0000355;1.17e-11;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!4.83e-28!83;UBERON:0002329!4.83e-28!83;UBERON:0003077!4.83e-28!83;UBERON:0003059!4.83e-28!83;UBERON:0007282!4.83e-28!83;UBERON:0009618!4.83e-28!83;UBERON:0007285!4.83e-28!83;UBERON:0004290!4.34e-24!70;UBERON:0001009!2.38e-23!113;UBERON:0004535!8.21e-23!110;UBERON:0002385!6.13e-21!63;UBERON:0001015!6.13e-21!63;UBERON:0000383!6.13e-21!63;UBERON:0001134!1.32e-20!61;UBERON:0002036!1.32e-20!61;UBERON:0003082!1.32e-20!61;UBERON:0000486!1.34e-18!82;UBERON:0004872!1.51e-18!84;UBERON:0005256!2.17e-18!143;UBERON:0001637!2.60e-18!42;UBERON:0003509!2.60e-18!42;UBERON:0004572!2.60e-18!42;UBERON:0002049!1.47e-17!79;UBERON:0007798!1.47e-17!79;UBERON:0001981!1.98e-16!60;UBERON:0007500!1.98e-16!60;UBERON:0004537!1.98e-16!60;UBERON:0006965!1.98e-16!60;UBERON:0004573!5.75e-16!33;UBERON:0004571!5.75e-16!33;UBERON:0000055!1.25e-15!69;UBERON:0000475!5.03e-14!365;UBERON:0000481!5.07e-13!347;UBERON:0000468!5.90e-13!659;UBERON:0003914!2.12e-12!118;UBERON:0000119!3.06e-12!312;UBERON:0000490!5.14e-12!138;UBERON:0003102!2.13e-11!95;UBERON:0000483!2.79e-11!309;UBERON:0000467!4.82e-11!625;UBERON:0000480!7.58e-11!626;UBERON:0002100!7.75e-11!216;UBERON:0000947!1.53e-09!21;UBERON:0010191!1.53e-09!21;UBERON:0003104!2.41e-09!238;UBERON:0009142!2.41e-09!238;UBERON:0000479!3.18e-09!787;UBERON:0000477!7.23e-09!286;UBERON:0002199!1.08e-08!45;UBERON:0002416!1.08e-08!45;UBERON:0007100!4.07e-08!27;UBERON:0004111!4.90e-08!241;UBERON:0000948!1.03e-07!24;UBERON:0005498!1.03e-07!24;UBERON:0004140!1.03e-07!24;UBERON:0009881!1.03e-07!24;UBERON:0004141!1.03e-07!24;UBERON:0003084!1.03e-07!24;UBERON:0007005!1.03e-07!24;UBERON:0004139!1.03e-07!24;UBERON:0004291!1.03e-07!24;UBERON:0000926!1.21e-07!448;UBERON:0004120!1.21e-07!448;UBERON:0006603!1.21e-07!448;UBERON:0002097!1.55e-07!40;UBERON:0002050!2.48e-07!605;UBERON:0005423!2.48e-07!605;UBERON:0001135!3.13e-07!15;UBERON:0000923!3.17e-07!604;UBERON:0005291!3.17e-07!604;UBERON:0006598!3.17e-07!604;UBERON:0002532!3.17e-07!604;UBERON:0000922!4.03e-07!612;UBERON:0004237!8.10e-07!10;UBERON:0004695!8.10e-07!10;UBERON:0002111!8.10e-07!10;UBERON:0004178!8.10e-07!10 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;6.42e-16;33!UBERON:0004571;6.42e-16;33!UBERON:0001637;4.67e-15;42!UBERON:0003509;4.67e-15;42!UBERON:0004572;4.67e-15;42!UBERON:0000947;6.21e-10;21!UBERON:0010191;6.21e-10;21!UBERON:0002385;1.13e-09;31!UBERON:0001015;1.13e-09;31!UBERON:0000383;1.13e-09;31!UBERON:0007500;5.54e-09;56!UBERON:0001981;5.54e-09;56!UBERON:0004537;5.54e-09;56!UBERON:0007100;2.27e-08;25!UBERON:0000948;6.02e-08;22!UBERON:0001135;1.38e-07;15!UBERON:0002199;1.41e-07;46!UBERON:0002416;1.41e-07;46!UBERON:0002097;1.70e-07;41!UBERON:0000055;2.02e-07;65!UBERON:0004237;6.51e-07;10!UBERON:0004695;6.51e-07;10!UBERON:0002111;6.51e-07;10!UBERON:0004178;6.51e-07;10!UBERON:0004535;7.23e-07;109!UBERON:0002204;8.37e-07;70 | |||
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| ||
|short_description=p5@LTBP1 | |||
}} | }} |
Latest revision as of 23:40, 16 September 2015
Short description: | p5@LTBP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_LTBP1_5end |
Coexpression cluster: | C2697_Chondrocyte_mesenchymal_Fibroblast_Smooth_Anulus_hepatic_aorta |
Association with transcript: | -18bp_to_ENST00000390003, ENST00000418533, NM_000627, NM_001166264, NM_001166265, NM_001166266_5end |
EntrezGene: | LTBP1 |
HGNC: | 6714 |
UniProt: | E7EV71Q14766B7ZLY3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
muscle precursor cell | 3.63e-23 | 58 |
myoblast | 3.63e-23 | 58 |
multi-potent skeletal muscle stem cell | 3.63e-23 | 58 |
muscle cell | 3.41e-22 | 55 |
fibroblast | 6.50e-21 | 76 |
smooth muscle cell | 2.91e-20 | 43 |
smooth muscle myoblast | 2.91e-20 | 43 |
electrically responsive cell | 6.50e-18 | 61 |
electrically active cell | 6.50e-18 | 61 |
vascular associated smooth muscle cell | 1.86e-17 | 32 |
mesodermal cell | 1.06e-09 | 121 |
skin fibroblast | 1.96e-09 | 23 |
somatic stem cell | 2.60e-07 | 433 |
multi fate stem cell | 2.78e-07 | 427 |
aortic smooth muscle cell | 6.51e-07 | 10 |