FFCP PHASE1:Hg19::chr3:55001120..55001131,-: Difference between revisions
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|id=chr3:55001120..55001131,-
|short_description=p6@LRTM1
|description=CAGE_peak_6_at_LRTM1_5end
|association_with_transcript=-5bp_to_ENST00000493075_5end
|EntrezG...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=57408 | |EntrezGene=57408 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25023 | |HGNC=25023 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-5bp_to_ENST00000493075_5end | |||
|cluster_id=chr3:55001120..55001131,- | |||
|coexpression_cluster_id=C221 | |||
|description=CAGE_peak_6_at_LRTM1_5end | |||
|id=chr3:55001120..55001131,- | |||
|ontology_enrichment_celltype=CL:0002322!3.44e-09!5 | |||
|ontology_enrichment_celltype_v019=CL:0000322;1.22e-14;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000322,1.22e-14,3 | |||
|ontology_enrichment_development_v019=UBERON:0004872;1.52e-23;7 | |||
|ontology_enrichment_disease=DOID:8552!3.27e-12!1;DOID:3910!8.93e-07!2 | |||
|ontology_enrichment_disease_v019=DOID:8552;1.48e-40;1!DOID:3910;3.11e-21;2!DOID:3908;2.53e-09;5!DOID:1325;5.08e-07;7!DOID:3904;5.08e-07;7 | |||
|ontology_enrichment_disease_v019_2=DOID:8552,1.48e-40,1;DOID:3910,3.11e-21,2;DOID:3908,2.53e-09,5;DOID:1325,5.08e-07,7;DOID:3904,5.08e-07,7 | |||
|ontology_enrichment_uberon=UBERON:0002106!2.10e-15!3;UBERON:0004854!2.10e-15!3;UBERON:0009034!2.10e-15!3;UBERON:0002095!2.10e-15!3;UBERON:0004782!2.10e-15!3;UBERON:0003281!2.10e-15!3;UBERON:0009664!2.10e-15!3;UBERON:0002296!2.10e-15!3;UBERON:0005602!2.10e-15!3;UBERON:0001179!2.10e-15!3;UBERON:0006293!2.10e-15!3;UBERON:0005409!2.88e-07!35;UBERON:0004177!4.20e-07!7;UBERON:0002108!7.65e-07!14;UBERON:0003124!8.34e-07!7;UBERON:0004903!8.93e-07!2;UBERON:0002173!8.93e-07!2;UBERON:0002186!8.93e-07!2 | |||
|ontology_enrichment_uberon_v019=UBERON:0002106;3.28e-53;3!UBERON:0004177;1.84e-32;5!UBERON:0005057;1.84e-32;5!UBERON:0004903;3.11e-21;2!UBERON:0002173;3.11e-21;2!UBERON:0002186;3.11e-21;2!UBERON:0004821;1.22e-14;3!UBERON:0007499;1.22e-14;3!UBERON:0003215;1.22e-14;3!UBERON:0010368;1.22e-14;3!UBERON:0009911;1.22e-14;3!UBERON:0002299;1.22e-14;3!UBERON:0006524;1.22e-14;3!UBERON:0008874;1.22e-14;3!UBERON:0002169;1.22e-14;3!UBERON:0004894;1.22e-14;3!UBERON:0009856;2.53e-11;4!UBERON:0002075;7.93e-10;18!UBERON:0000077;7.13e-07;27!UBERON:0002405;7.13e-07;27 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002106,3.75e-53,3;UBERON:0004854,3.75e-53,3;UBERON:0009034,3.75e-53,3;UBERON:0002095,3.75e-53,3;UBERON:0004782,3.75e-53,3;UBERON:0003281,3.75e-53,3;UBERON:0009664,3.75e-53,3;UBERON:0002296,3.75e-53,3;UBERON:0005602,3.75e-53,3;UBERON:0001179,3.75e-53,3;UBERON:0006293,3.75e-53,3;UBERON:0004177,1.61e-23,7;UBERON:0005057,1.61e-23,7;UBERON:0004903,3.11e-21,2;UBERON:0002173,3.11e-21,2;UBERON:0002186,3.11e-21,2;UBERON:0000945,9.92e-21,8;UBERON:0010039,9.92e-21,8;UBERON:0004821,1.22e-14,3;UBERON:0003215,1.22e-14,3;UBERON:0010368,1.22e-14,3;UBERON:0009911,1.22e-14,3;UBERON:0002299,1.22e-14,3;UBERON:0006524,1.22e-14,3;UBERON:0008874,1.22e-14,3;UBERON:0002169,1.22e-14,3;UBERON:0004894,1.22e-14,3;UBERON:0004457,3.36e-14,12;UBERON:0000042,3.36e-14,12;UBERON:0003887,3.36e-14,12;UBERON:0002075,8.11e-10,18;UBERON:0005409,4.28e-07,25 | |||
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|short_description=p6@LRTM1 | |||
}} | }} |
Latest revision as of 02:31, 19 September 2015
Short description: | p6@LRTM1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_LRTM1_5end |
Coexpression cluster: | C221_alveolar_Osteoblast_Myoblast_mesenchymal_liposarcoma_Smooth_hepatocellular |
Association with transcript: | -5bp_to_ENST00000493075_5end |
EntrezGene: | LRTM1 |
HGNC: | 25023 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pneumocyte | 1.22e-14 | 3 |
Ontology term | p-value | n |
---|---|---|
spleen | 3.75e-53 | 3 |
gastrointestinal system mesentery | 3.75e-53 | 3 |
stomach region | 3.75e-53 | 3 |
mesentery | 3.75e-53 | 3 |
gastrointestinal system serosa | 3.75e-53 | 3 |
mesentery of stomach | 3.75e-53 | 3 |
gut mesentery | 3.75e-53 | 3 |
dorsal mesentery | 3.75e-53 | 3 |
dorsal mesogastrium | 3.75e-53 | 3 |
peritoneal cavity | 3.75e-53 | 3 |
spleen primordium | 3.75e-53 | 3 |
hemopoietic organ | 1.61e-23 | 7 |
immune organ | 1.61e-23 | 7 |
bronchoalveolar duct junction | 3.11e-21 | 2 |
alveolar duct | 3.11e-21 | 2 |
bronchiole | 3.11e-21 | 2 |
stomach | 9.92e-21 | 8 |
food storage organ | 9.92e-21 | 8 |
pulmonary alveolus epithelium | 1.22e-14 | 3 |
alveolus | 1.22e-14 | 3 |
pulmonary lobule | 1.22e-14 | 3 |
lobule | 1.22e-14 | 3 |
alveolus of lung | 1.22e-14 | 3 |
alveolar system | 1.22e-14 | 3 |
pulmonary acinus | 1.22e-14 | 3 |
alveolar sac | 1.22e-14 | 3 |
alveolar wall | 1.22e-14 | 3 |
cavity lining | 3.36e-14 | 12 |
serous membrane | 3.36e-14 | 12 |
intraembryonic coelom | 3.36e-14 | 12 |
viscus | 8.11e-10 | 18 |
gastrointestinal system | 4.28e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
chronic myeloid leukemia | 1.48e-40 | 1 |
lung adenocarcinoma | 3.11e-21 | 2 |
non-small cell lung carcinoma | 2.53e-09 | 5 |
bronchus cancer | 5.08e-07 | 7 |
bronchogenic carcinoma | 5.08e-07 | 7 |