UBERON:0008886: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| (One intermediate revision by the same user not shown) | |||
| Line 10: | Line 10: | ||
|has_quality= | |has_quality= | ||
|id=UBERON:0008886 | |id=UBERON:0008886 | ||
|is_a=UBERON:0007798 | |is_a=UBERON:0007798 | ||
|is_obsolete= | |is_obsolete= | ||
|located_in= | |located_in= | ||
|name=pulmonary vascular system | |name=pulmonary vascular system | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0004535 | |part_of=UBERON:0004535 | ||
Latest revision as of 18:04, 12 September 2014
| Name: | pulmonary vascular system | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Subdivision of cardiovascular system which has as its parts the pulmonary arterial and venous tree organs." [FMA:45621, Wikipedia:Pulmonary_circulation] | ||
| Xrefs: |
| ||
| Synonyms: | "pulmonary circulatory system" EXACT [FMA:45621] |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0007798(vascular system) |
|---|---|
| part_of: | UBERON:0004535(cardiovascular system) |
Children
| part of: | UBERON:0002012 (pulmonary artery) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 11250-116E8 (Fibroblast - Pulmonary Artery, donor1)
- 11288-117A1 (Smooth Muscle Cells - Pulmonary Artery, donor1)
- 11365-117I6 (Smooth Muscle Cells - Pulmonary Artery, donor2)
- 11437-118H6 (Smooth Muscle Cells - Pulmonary Artery, donor3)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0008886 (pulmonary vascular system), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.55e-98 | FFCP PHASE1:Hg19::chr8:90366581..90366594,-#_a6368f364361567376e972a7b077cb94 | p@chr8:90366581..90366594, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr6:21648948..21648949,+#_a6368f364361567376e972a7b077cb94 | p@chr6:21648948..21648949, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr4:70707713..70707716,-#_a6368f364361567376e972a7b077cb94 | p@chr4:70707713..70707716, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr8:90366581..90366594,-#_a6368f364361567376e972a7b077cb94 | p@chr8:90366581..90366594, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr6:21648948..21648949,+#_a6368f364361567376e972a7b077cb94 | p@chr6:21648948..21648949, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr4:70707713..70707716,-#_a6368f364361567376e972a7b077cb94 | p@chr4:70707713..70707716, - |
| 2.74e-50 | FFCP PHASE1:Hg19::chr4:70707556..70707558,-#_e00918ba619b9ce9113ca536b6482e02 | p@chr4:70707556..70707558, - |
| 2.74e-50 | FFCP PHASE2:Hg19::chr4:70707556..70707558,-#_e00918ba619b9ce9113ca536b6482e02 | p@chr4:70707556..70707558, - |
| 4.52e-50 | FFCP PHASE2:Hg19::chr10:90749902..90749913,+#_95bfdebc19d349e903a136a0f5f4c159 | p14@FAS |
| 4.52e-50 | FFCP PHASE1:Hg19::chr6:21666284..21666297,+#_95bfdebc19d349e903a136a0f5f4c159 | p26@LINC00340 |
| 4.52e-50 | FFCP PHASE2:Hg19::chr3:158928407..158928414,+#_95bfdebc19d349e903a136a0f5f4c159 | p@chr3:158928407..158928414, + |
| 4.52e-50 | FFCP PHASE1:Hg19::chrX:23072856..23072859,-#_95bfdebc19d349e903a136a0f5f4c159 | p@chrX:23072856..23072859, - |
| 4.52e-50 | FFCP PHASE1:Hg19::chr8:120651826..120651840,-#_95bfdebc19d349e903a136a0f5f4c159 | p@chr8:120651826..120651840, - |
| 4.52e-50 | FFCP PHASE2:Hg19::chr6:21666284..21666297,+#_95bfdebc19d349e903a136a0f5f4c159 | p26@LINC00340 |
| 4.52e-50 | FFCP PHASE2:Hg19::chr8:120651826..120651840,-#_95bfdebc19d349e903a136a0f5f4c159 | p@chr8:120651826..120651840, - |
| 4.52e-50 | FFCP PHASE1:Hg19::chr3:158928407..158928414,+#_95bfdebc19d349e903a136a0f5f4c159 | p@chr3:158928407..158928414, + |
| 4.52e-50 | FFCP PHASE2:Hg19::chrX:23072856..23072859,-#_95bfdebc19d349e903a136a0f5f4c159 | p@chrX:23072856..23072859, - |
| 4.52e-50 | FFCP PHASE1:Hg19::chr10:90749902..90749913,+#_95bfdebc19d349e903a136a0f5f4c159 | p14@FAS |
| 3.61e-34 | FFCP PHASE2:Hg19::chr4:70707608..70707615,-#_36b4469975794eebe08367b206b1fde8 | p@chr4:70707608..70707615, - |
| 3.61e-34 | FFCP PHASE1:Hg19::chr4:70707608..70707615,-#_36b4469975794eebe08367b206b1fde8 | p@chr4:70707608..70707615, - |
| 5.04e-34 | FFCP PHASE1:Hg19::chr3:156258392..156258395,-#_92357219b4fcaad12012bc1ee082deab | p@chr3:156258392..156258395, - |
| 5.04e-34 | FFCP PHASE1:Hg19::chr4:70690584..70690589,+#_92357219b4fcaad12012bc1ee082deab | p@chr4:70690584..70690589, + |
| 5.04e-34 | FFCP PHASE1:Hg19::chr17:76824975..76824978,-#_92357219b4fcaad12012bc1ee082deab | p@chr17:76824975..76824978, - |
| 5.04e-34 | FFCP PHASE2:Hg19::chr3:156258392..156258395,-#_92357219b4fcaad12012bc1ee082deab | p@chr3:156258392..156258395, - |
| 5.04e-34 | FFCP PHASE1:Hg19::chr11:131614903..131614910,-#_92357219b4fcaad12012bc1ee082deab | p@chr11:131614903..131614910, - |
| 5.04e-34 | FFCP PHASE2:Hg19::chr4:70690584..70690589,+#_92357219b4fcaad12012bc1ee082deab | p@chr4:70690584..70690589, + |
| 5.04e-34 | FFCP PHASE2:Hg19::chr17:76824975..76824978,-#_92357219b4fcaad12012bc1ee082deab | p@chr17:76824975..76824978, - |
| 5.04e-34 | FFCP PHASE2:Hg19::chr11:131614903..131614910,-#_92357219b4fcaad12012bc1ee082deab | p@chr11:131614903..131614910, - |
| 7.05e-34 | FFCP PHASE2:Hg19::chr19:54466179..54466202,+#_9e4ff9df2df5538047c2f7d32ed62c65 | p1@CACNG8 |
| 7.05e-34 | FFCP PHASE1:Hg19::chr13:38136724..38136726,+#_9e4ff9df2df5538047c2f7d32ed62c65 | p@chr13:38136724..38136726, + |
| 7.05e-34 | FFCP PHASE1:Hg19::chr11:94587086..94587097,+#_9e4ff9df2df5538047c2f7d32ed62c65 | p19@AMOTL1 |
| 7.05e-34 | FFCP PHASE1:Hg19::chr20:48184812..48184818,-#_9e4ff9df2df5538047c2f7d32ed62c65 | p13@PTGIS |
| 7.05e-34 | FFCP PHASE1:Hg19::chr4:38147484..38147500,-#_9e4ff9df2df5538047c2f7d32ed62c65 | p@chr4:38147484..38147500, - |
| 7.05e-34 | FFCP PHASE2:Hg19::chr1:93043102..93043113,-#_9e4ff9df2df5538047c2f7d32ed62c65 | p@chr1:93043102..93043113, - |
| 7.05e-34 | FFCP PHASE2:Hg19::chr11:94587086..94587097,+#_9e4ff9df2df5538047c2f7d32ed62c65 | p19@AMOTL1 |
| 7.05e-34 | FFCP PHASE1:Hg19::chr6:119590894..119590904,-#_9e4ff9df2df5538047c2f7d32ed62c65 | p1@ENST00000406333 |
| 7.05e-34 | FFCP PHASE1:Hg19::chr7:18834859..18834879,-#_9e4ff9df2df5538047c2f7d32ed62c65 | p@chr7:18834859..18834879, - |
| 7.05e-34 | FFCP PHASE2:Hg19::chrX:140904171..140904173,+#_9e4ff9df2df5538047c2f7d32ed62c65 | p@chrX:140904171..140904173, + |
| 7.05e-34 | FFCP PHASE1:Hg19::chr4:24645959..24645967,+#_9e4ff9df2df5538047c2f7d32ed62c65 | p@chr4:24645959..24645967, + |
| 7.05e-34 | FFCP PHASE2:Hg19::chr13:38136724..38136726,+#_9e4ff9df2df5538047c2f7d32ed62c65 | p@chr13:38136724..38136726, + |
| 7.05e-34 | FFCP PHASE1:Hg19::chr8:134047162..134047169,+#_9e4ff9df2df5538047c2f7d32ed62c65 | p@chr8:134047162..134047169, + |
| 7.05e-34 | FFCP PHASE2:Hg19::chr9:16059821..16059828,+#_9e4ff9df2df5538047c2f7d32ed62c65 | p@chr9:16059821..16059828, + |
| 7.05e-34 | FFCP PHASE1:Hg19::chr19:54466179..54466202,+#_9e4ff9df2df5538047c2f7d32ed62c65 | p1@CACNG8 |
| 7.05e-34 | FFCP PHASE1:Hg19::chr7:22687639..22687644,+#_9e4ff9df2df5538047c2f7d32ed62c65 | p@chr7:22687639..22687644, + |
| 7.05e-34 | FFCP PHASE1:Hg19::chr1:93043102..93043113,-#_9e4ff9df2df5538047c2f7d32ed62c65 | p@chr1:93043102..93043113, - |
| 7.05e-34 | FFCP PHASE2:Hg19::chr1:176668544..176668553,+#_9e4ff9df2df5538047c2f7d32ed62c65 | p@chr1:176668544..176668553, + |
| 7.05e-34 | FFCP PHASE2:Hg19::chr7:18834859..18834879,-#_9e4ff9df2df5538047c2f7d32ed62c65 | p@chr7:18834859..18834879, - |
| 7.05e-34 | FFCP PHASE2:Hg19::chr4:38147484..38147500,-#_9e4ff9df2df5538047c2f7d32ed62c65 | p@chr4:38147484..38147500, - |
| 7.05e-34 | FFCP PHASE1:Hg19::chrX:140904171..140904173,+#_9e4ff9df2df5538047c2f7d32ed62c65 | p@chrX:140904171..140904173, + |
| 7.05e-34 | FFCP PHASE2:Hg19::chr8:134047162..134047169,+#_9e4ff9df2df5538047c2f7d32ed62c65 | p@chr8:134047162..134047169, + |
| 7.05e-34 | FFCP PHASE2:Hg19::chr6:119590894..119590904,-#_9e4ff9df2df5538047c2f7d32ed62c65 | p1@ENST00000406333 |
| 7.05e-34 | FFCP PHASE1:Hg19::chr9:16059821..16059828,+#_9e4ff9df2df5538047c2f7d32ed62c65 | p@chr9:16059821..16059828, + |
| 7.05e-34 | FFCP PHASE2:Hg19::chr20:48184812..48184818,-#_9e4ff9df2df5538047c2f7d32ed62c65 | p13@PTGIS |
| 7.05e-34 | FFCP PHASE2:Hg19::chr7:22687639..22687644,+#_9e4ff9df2df5538047c2f7d32ed62c65 | p@chr7:22687639..22687644, + |
| 7.05e-34 | FFCP PHASE1:Hg19::chr1:176668544..176668553,+#_9e4ff9df2df5538047c2f7d32ed62c65 | p@chr1:176668544..176668553, + |
| 7.05e-34 | FFCP PHASE2:Hg19::chr4:24645959..24645967,+#_9e4ff9df2df5538047c2f7d32ed62c65 | p@chr4:24645959..24645967, + |
| 5.56e-26 | FFCP PHASE1:Hg19::chr9:33797893..33797903,+#_cde6d37c7af356158f2a62baf24670f6 | p@chr9:33797893..33797903, + |
| 5.56e-26 | FFCP PHASE2:Hg19::chr9:33797893..33797903,+#_cde6d37c7af356158f2a62baf24670f6 | p@chr9:33797893..33797903, + |
| 7.14e-26 | FFCP PHASE1:Hg19::chr10:103040652..103040655,+#_67d8b740ce8f73da5a679cc44a35ce38 | p1@ENST00000492301 |
| 7.14e-26 | FFCP PHASE2:Hg19::chr17:61995172..61995199,-#_67d8b740ce8f73da5a679cc44a35ce38 | p@chr17:61995172..61995199, - |
| 7.14e-26 | FFCP PHASE2:Hg19::chr18:65175930..65175941,+#_67d8b740ce8f73da5a679cc44a35ce38 | p@chr18:65175930..65175941, + |
| 7.14e-26 | FFCP PHASE2:Hg19::chr2:73302288..73302299,-#_67d8b740ce8f73da5a679cc44a35ce38 | p13@RAB11FIP5 |
| 7.14e-26 | FFCP PHASE2:Hg19::chr19:15509437..15509442,-#_67d8b740ce8f73da5a679cc44a35ce38 | p@chr19:15509437..15509442, - |
| 7.14e-26 | FFCP PHASE2:Hg19::chr10:103040652..103040655,+#_67d8b740ce8f73da5a679cc44a35ce38 | p1@ENST00000492301 |
| 7.14e-26 | FFCP PHASE2:Hg19::chr6:34208414..34208429,+#_67d8b740ce8f73da5a679cc44a35ce38 | p16@HMGA1 |
| 7.14e-26 | FFCP PHASE1:Hg19::chr4:891819..891820,-#_67d8b740ce8f73da5a679cc44a35ce38 | p@chr4:891819..891820, - |
| 7.14e-26 | FFCP PHASE2:Hg19::chr19:10218330..10218339,+#_67d8b740ce8f73da5a679cc44a35ce38 | p1@SNORD105 |
| 7.14e-26 | FFCP PHASE1:Hg19::chr8:123580995..123581003,-#_67d8b740ce8f73da5a679cc44a35ce38 | p@chr8:123580995..123581003, - |
| 7.14e-26 | FFCP PHASE1:Hg19::chr17:61995172..61995199,-#_67d8b740ce8f73da5a679cc44a35ce38 | p@chr17:61995172..61995199, - |
| 7.14e-26 | FFCP PHASE1:Hg19::chr18:65175930..65175941,+#_67d8b740ce8f73da5a679cc44a35ce38 | p@chr18:65175930..65175941, + |
| 7.14e-26 | FFCP PHASE1:Hg19::chr19:15509437..15509442,-#_67d8b740ce8f73da5a679cc44a35ce38 | p@chr19:15509437..15509442, - |
| 7.14e-26 | FFCP PHASE1:Hg19::chr6:34208414..34208429,+#_67d8b740ce8f73da5a679cc44a35ce38 | p16@HMGA1 |
| 7.14e-26 | FFCP PHASE1:Hg19::chr2:73302288..73302299,-#_67d8b740ce8f73da5a679cc44a35ce38 | p13@RAB11FIP5 |
| 7.14e-26 | FFCP PHASE1:Hg19::chr19:10218330..10218339,+#_67d8b740ce8f73da5a679cc44a35ce38 | p1@SNORD105 |
| 7.14e-26 | FFCP PHASE2:Hg19::chr4:891819..891820,-#_67d8b740ce8f73da5a679cc44a35ce38 | p@chr4:891819..891820, - |
| 7.14e-26 | FFCP PHASE2:Hg19::chr8:123580995..123581003,-#_67d8b740ce8f73da5a679cc44a35ce38 | p@chr8:123580995..123581003, - |
| 9.18e-26 | FFCP PHASE1:Hg19::chr11:13484984..13484992,+#_1d75f971394463d489ae28554866355b | p5@BC031228 |
| 9.18e-26 | FFCP PHASE2:Hg19::chr6:148593641..148593643,+#_1d75f971394463d489ae28554866355b | p@chr6:148593641..148593643, + |
| 9.18e-26 | FFCP PHASE2:Hg19::chr9:33797981..33798005,-#_1d75f971394463d489ae28554866355b | p@chr9:33797981..33798005, - |
| 9.18e-26 | FFCP PHASE2:Hg19::chr3:11675748..11675759,-#_1d75f971394463d489ae28554866355b | p@chr3:11675748..11675759, - |
| 9.18e-26 | FFCP PHASE1:Hg19::chr5:146890197..146890224,-#_1d75f971394463d489ae28554866355b | p@chr5:146890197..146890224, - |
| 9.18e-26 | FFCP PHASE1:Hg19::chr8:37374492..37374499,-#_1d75f971394463d489ae28554866355b | p1@ENST00000521989 |
| 9.18e-26 | FFCP PHASE1:Hg19::chr4:114257151..114257163,+#_1d75f971394463d489ae28554866355b | p28@ANK2 |
| 9.18e-26 | FFCP PHASE2:Hg19::chr4:74392579..74392583,+#_1d75f971394463d489ae28554866355b | p@chr4:74392579..74392583, + |
| 9.18e-26 | FFCP PHASE2:Hg19::chr15:71371688..71371691,-#_1d75f971394463d489ae28554866355b | p@chr15:71371688..71371691, - |
| 9.18e-26 | FFCP PHASE2:Hg19::chr11:13484984..13484992,+#_1d75f971394463d489ae28554866355b | p5@BC031228 |
| 9.18e-26 | FFCP PHASE1:Hg19::chr8:94712896..94712909,+#_1d75f971394463d489ae28554866355b | p10@FAM92A1 |
| 9.18e-26 | FFCP PHASE1:Hg19::chr2:84316409..84316414,-#_1d75f971394463d489ae28554866355b | p@chr2:84316409..84316414, - |
| 9.18e-26 | FFCP PHASE2:Hg19::chr19:681941..681952,+#_1d75f971394463d489ae28554866355b | p@chr19:681941..681952, + |
| 9.18e-26 | FFCP PHASE2:Hg19::chr1:185703364..185703371,-#_1d75f971394463d489ae28554866355b | p@chr1:185703364..185703371, - |
| 9.18e-26 | FFCP PHASE1:Hg19::chr6:148593641..148593643,+#_1d75f971394463d489ae28554866355b | p@chr6:148593641..148593643, + |
| 9.18e-26 | FFCP PHASE1:Hg19::chr2:238116338..238116342,-#_1d75f971394463d489ae28554866355b | p@chr2:238116338..238116342, - |
| 9.18e-26 | FFCP PHASE1:Hg19::chr9:33797981..33798005,-#_1d75f971394463d489ae28554866355b | p@chr9:33797981..33798005, - |
| 9.18e-26 | FFCP PHASE2:Hg19::chr8:37374492..37374499,-#_1d75f971394463d489ae28554866355b | p1@ENST00000521989 |
| 9.18e-26 | FFCP PHASE1:Hg19::chr4:74392579..74392583,+#_1d75f971394463d489ae28554866355b | p@chr4:74392579..74392583, + |
| 9.18e-26 | FFCP PHASE2:Hg19::chr5:146890197..146890224,-#_1d75f971394463d489ae28554866355b | p@chr5:146890197..146890224, - |
| 9.18e-26 | FFCP PHASE2:Hg19::chr2:84316409..84316414,-#_1d75f971394463d489ae28554866355b | p@chr2:84316409..84316414, - |
| 9.18e-26 | FFCP PHASE1:Hg19::chr3:11675748..11675759,-#_1d75f971394463d489ae28554866355b | p@chr3:11675748..11675759, - |
| 9.18e-26 | FFCP PHASE2:Hg19::chr4:114257151..114257163,+#_1d75f971394463d489ae28554866355b | p28@ANK2 |
| 9.18e-26 | FFCP PHASE1:Hg19::chr1:185703364..185703371,-#_1d75f971394463d489ae28554866355b | p@chr1:185703364..185703371, - |
