FF:10616-108G4: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005203 | |||
|accession_numbers=CAGE;DRX008016;DRR008888;DRZ000313;DRZ001698;DRZ011663;DRZ013048 | |||
|ancestors_in_anatomy_facet= | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000076,CL:0000255 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000076,CL:0000255 | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr11:34642612..34642646,+!p1@EHF!2.32!208.91!EHF;;chr1:209979467..209979494,-!p1@IRF6!2.27!208.91!IRF6;;chr2:176969228..176969260,+!p1@HOXD11!1.74!53.64!HOXD11;;chr12:66218598..66218645,+!p2@HMGA2!1.69!212.44!HMGA2;;chr15:83953397..83953425,-!p1@BNC1!1.66!50.46!BNC1;;chr3:189507432..189507459,+!p1@TP63!1.64!42.70!TP63;;chr2:114036488..114036504,-!p1@PAX8!1.59!38.11!PAX8;;chr6:1312325..1312340,+!p1@FOXQ1!1.49!48.35!FOXQ1;;chr10:8096631..8096660,+!p1@GATA3!1.49!36.35!GATA3;;chr12:77459306..77459365,-!p1@E2F7!1.48!346.90!E2F7;;chr1:209979411..209979433,-!p2@IRF6!1.47!28.58!IRF6;;chr12:66218255..66218304,+!p3@HMGA2!1.45!71.64!HMGA2;;chr11:65667884..65667895,-!p2@FOSL1!1.44!100.58!FOSL1;;chr12:66218836..66218888,+!p1@HMGA2!1.43!232.20!HMGA2;;chr12:54785054..54785072,-!p4@ZNF385A!1.40!27.17!ZNF385A;;chr6:10412600..10412637,-!p1@TFAP2A!1.39!39.17!TFAP2A;;chr12:54785074..54785122,-!p2@ZNF385A!1.39!36.00!ZNF385A;;chr3:111314186..111314204,-!p1@ZBED2!1.39!23.29!ZBED2;;chr12:66218003..66218018,+!p9@HMGA2!1.38!27.53!HMGA2;;chr10:8096772..8096787,+!p2@GATA3!1.33!24.00!GATA3;;chr1:6479968..6479986,-!p1@HES2!1.33!20.47!HES2;;chr15:67418119..67418162,+!p5@SMAD3!1.32!21.88!SMAD3;;chr17:8027418..8027432,-!p1@HES7!1.32!20.12!HES7;;chr5:72744594..72744609,-!p1@FOXD1!1.30!83.99!FOXD1;;chr11:120107344..120107351,+!p1@POU2F3!1.28!21.88!POU2F3;;chr12:27485762..27485776,+!p3@ARNTL2!1.27!46.94!ARNTL2;;chr11:65667846..65667868,-!p1@FOSL1!1.25!428.77!FOSL1;;chr17:70117153..70117174,+!p1@SOX9!1.24!166.57!SOX9;;chr13:36788658..36788703,-!p2@CCDC169-SOHLH2,p2@SOHLH2!1.24!16.23!SOHLH2;;chr11:34642656..34642667,+!p2@EHF!1.22!15.53!EHF;;chr1:201979703..201979721,+!p2@ELF3!1.22!15.53!ELF3;;chr15:67418047..67418093,+!p4@SMAD3!1.21!19.06!SMAD3;;chr7:101917447..101917479,+!p4@CUX1!1.18!14.12!CUX1;;chr8:102504651..102504683,+!p1@GRHL2!1.18!14.12!GRHL2;;chr8:10588010..10588030,-!p1@SOX7!1.17!13.76!SOX7;;chr2:176969179..176969226,+!p2@HOXD11!1.16!13.41!HOXD11;;chr5:134369905..134369972,-!p1@PITX1!1.13!19.06!PITX1;;chr5:172662197..172662216,-!p1@NKX2-5!1.11!12.00!NKX2-5;;chr12:66218573..66218596,+!p7@HMGA2!1.09!16.94!HMGA2;;chr3:32023232..32023273,+!p1@ZNF860!1.09!16.23!ZNF860;;chr2:46524897..46524911,+!p2@EPAS1!1.08!31.41!EPAS1;;chr7:28448965..28448994,+!p2@CREB5!1.07!37.76!CREB5;;chr5:137804405..137804444,+!p3@EGR1!1.07!13.06!EGR1;;chr19:45908292..45908374,-!p1@PPP1R13L!1.06!92.81!PPP1R13L;;chr5:134369879..134369898,-!p2@PITX1!1.06!10.59!PITX1;;chr17:7492684..7492778,-!p2@SOX15!1.05!21.88!SOX15;;chr1:24645832..24645853,+!p1@GRHL3!1.04!9.88!GRHL3;;chr10:44101850..44101896,+!p1@ZNF485!1.03!31.05!ZNF485;;chr13:73633131..73633149,+!p1@KLF5!1.01!101.28!KLF5;;chr6:34210478..34210481,+!p8@HMGA1!0.99!8.82!HMGA1;;chr6:10413188..10413249,-!p7@TFAP2A!0.98!8.47!TFAP2A;;chr12:66218443..66218461,+!p8@HMGA2!0.96!10.59!HMGA2;;chr3:37217736..37217753,-!p2@LRRFIP2!0.95!34.23!LRRFIP2;;chr12:96588368..96588394,+!p3@ELK3!0.95!21.88!ELK3;;chr5:72744445..72744466,-!p2@FOXD1!0.95!13.41!FOXD1;;chr19:33865009..33865090,+!p3@CEBPG!0.95!10.59!CEBPG;;chr19:45971246..45971265,+!p1@FOSB!0.94!148.92!FOSB;;chr7:101917407..101917443,+!p3@CUX1!0.94!7.76!CUX1;;chr7:28610099..28610113,+!p5@CREB5!0.94!7.76!CREB5;;chr21:36421535..36421610,-!p2@RUNX1!0.93!27.53!RUNX1;;chr6:106534192..106534224,+!p1@PRDM1!0.92!21.17!PRDM1;;chr15:74833584..74833626,+!p1@ARID3B!0.92!17.64!ARID3B;;chr10:44101902..44101932,+!p2@ZNF485!0.92!15.17!ZNF485;;chr19:53496768..53496799,-!p1@ZNF702P!0.92!11.65!ZNF702P;;chr6:10412392..10412409,-!p4@TFAP2A!0.92!8.47!TFAP2A;;chr11:65686732..65686756,+!p2@DRAP1!0.91!31.41!DRAP1;;chr12:66218378..66218401,+!p6@HMGA2!0.91!11.29!HMGA2;;chr10:64018918..64018936,+!p2@ZNF365!0.91!7.06!ZNF365;;chr1:158979792..158979814,+!p2@IFI16!0.90!69.87!IFI16;;chr7:99156434..99156510,+!p2@ZNF655!0.90!44.46!ZNF655;;chr5:137801160..137801176,+!p1@EGR1!0.89!706.85!EGR1;;chr10:44070016..44070069,-!p1@ZNF239!0.89!21.17!ZNF239;;chr10:8095593..8095625,+!p3@GATA3!0.89!8.12!GATA3;;chr17:35294075..35294102,+!p1@ENST00000559335!0.89!6.71!LHX1;;chr3:141087562..141087594,+!p12@ZBTB38!0.89!6.71!ZBTB38;;chr10:43134001..43134026,-!p1@ZNF33B!0.88!31.05!ZNF33B;;chr11:64764435..64764449,-!p1@BATF2!0.88!9.18!BATF2;;chr7:28725740..28725778,+!p1@CREB5!0.87!60.70!CREB5;;chr19:45579725..45579743,-!p1@ZNF296!0.87!30.35!ZNF296;;chr10:64134120..64134183,+!p1@ZNF365!0.87!7.76!ZNF365;;chr12:27485823..27485868,+!p2@ARNTL2!0.85!26.11!ARNTL2;;chr18:3447536..3447542,+!p23@TGIF1!0.85!6.00!TGIF1;;chr2:172967621..172967637,-!p1@DLX2!0.84!16.59!DLX2;;chr6:106534230..106534254,+!p2@PRDM1!0.84!15.53!PRDM1;;chr5:137804357..137804390,+!p4@EGR1!0.84!7.06!EGR1;;chr6:34204921..34204939,+!p3@HMGA1!0.83!185.27!HMGA1;;chr5:72743793..72743855,-!p4@FOXD1!0.82!6.71!FOXD1;;chr7:99156011..99156036,+!p7@ZNF655!0.82!6.71!ZNF655;;chr11:65668011..65668020,-!p3@FOSL1!0.82!5.65!FOSL1;;chr12:48298765..48298783,-!p2@VDR!0.81!12.00!VDR;;chr8:49833978..49833996,-!p1@SNAI2!0.80!118.93!SNAI2;;chr11:64073022..64073056,+!p1@ESRRA!0.80!69.52!ESRRA;;chr8:49833948..49833973,-!p2@SNAI2!0.80!36.70!SNAI2;;chr7:101917482..101917507,+!p6@CUX1!0.80!5.29!CUX1;;chr1:24646263..24646277,+!p4@GRHL3!0.80!5.29!GRHL3;;chr15:67418177..67418204,+!p9@SMAD3!0.80!5.29!SMAD3;;chr16:86612320..86612394,+!p1@FOXL1!0.80!5.29!FOXL1;;chr12:66218420..66218439,+!p12@HMGA2!0.80!5.29!HMGA2;;chr12:66218904..66218913,+!p11@HMGA2!0.80!5.29!HMGA2;;chr12:96588143..96588185,+!p1@ELK3!0.79!68.46!ELK3;;chr7:99156314..99156372,+!p4@ZNF655!0.78!18.00!ZNF655;;chr6:10412576..10412599,-!p5@TFAP2A!0.77!4.94!TFAP2A;;chr14:37131058..37131139,+!p1@PAX9!0.77!4.94!PAX9;;chr1:43148855..43148908,+!p4@YBX1!0.76!7.76!YBX1;;chr20:50721803..50721857,-!p2@ZFP64!0.76!7.76!ZFP64;;chr3:141087339..141087387,+!p2@ZBTB38!0.75!52.93!ZBTB38;;chr19:12203100..12203132,+!p1@ZNF788!0.75!9.88!ZNF788;;chr19:57792157..57792170,+!p6@ZNF460!0.75!7.06!ZNF460;;chr1:40367668..40367684,-!p2@MYCL1!0.75!4.59!MYCL1;;chr12:54393880..54393962,+!p1@HOXC9!0.75!4.59!HOXC9;;chr12:66218923..66218934,+!p14@HMGA2!0.75!4.59!HMGA2;;chr12:66358080..66358094,+!p15@HMGA2!0.75!4.59!HMGA2;;chr9:100615499..100615519,+!p1@FOXE1!0.75!4.59!FOXE1;;chr3:178789220..178789255,-!p6@ZMAT3!0.75!4.59!ZMAT3;;chr9:137263790..137263815,+!p7@RXRA!0.75!4.59!RXRA;;chr11:128392273..128392308,-!p2@ETS1!0.73!20.47!ETS1;;chr19:9785724..9785740,-!p2@ZNF562!0.73!19.06!ZNF562;;chr3:141087393..141087426,+!p3@ZBTB38!0.73!19.06!ZBTB38;;chr19:33864571..33864596,+!p2@CEBPG!0.73!11.65!CEBPG;;chr11:65686802..65686818,+!p6@DRAP1!0.73!8.12!DRAP1;;chr19:53193731..53193767,-!p1@ZNF83!0.72!42.35!ZNF83;;chr3:141868357..141868393,-!p3@TFDP2!0.72!31.41!TFDP2;;chr13:41593425..41593480,-!p1@ELF1!0.72!30.35!ELF1;;chr3:24536253..24536328,-!p1@THRB!0.72!8.47!THRB;;chr2:113999263..113999274,-!p13@PAX8!0.72!4.23!PAX8;;chr1:201979743..201979762,+!p1@ELF3!0.72!4.23!ELF3;;chr15:83953373..83953386,-!p2@BNC1!0.72!4.23!BNC1;;chr17:41622731..41622764,-!p5@ETV4!0.72!4.23!ETV4;;chr5:50679228..50679288,+!p1@ISL1!0.72!4.23!ISL1;;chr1:158979872..158979898,+!p3@IFI16!0.71!14.12!IFI16;;chr7:99613250..99613264,+!p2@ZKSCAN1!0.71!13.41!ZKSCAN1;;chr12:27485785..27485816,+!p1@ARNTL2!0.70!31.76!ARNTL2;;chr1:40367530..40367597,-!p1@MYCL1!0.70!7.76!MYCL1;;chr3:168864315..168864339,-!p2@MECOM!0.70!7.06!MECOM;;chr15:96869114..96869160,+!p11@NR2F2!0.70!5.65!NR2F2;;chr11:47236584..47236679,+!p1@DDB2!0.69!48.70!DDB2;;chr2:192015701..192015743,-!p1@STAT4!0.69!5.65!STAT4;;chr3:69811882..69811898,+!p6@MITF!0.69!3.88!MITF;;chr11:65554528..65554546,+!p1@OVOL1!0.69!3.88!OVOL1;;chr3:150126759..150126784,+!p2@TSC22D2!0.68!19.41!TSC22D2;;chr1:43148792..43148849,+!p2@YBX1!0.68!16.23!YBX1;;chr2:169312600..169312606,+!p2@CERS6!0.68!6.35!CERS6;;chr3:178789522..178789564,-!p2@ZMAT3!0.67!31.41!ZMAT3;;chr12:96588219..96588263,+!p2@ELK3!0.67!30.70!ELK3;;chr4:4291837..4291859,-!p2@LYAR!0.67!13.41!LYAR;;chr10:48355030..48355090,+!p1@ZNF488!0.67!4.94!ZNF488;;chr17:38256822..38256851,-!p1@NR1D1!0.66!32.11!NR1D1;;chr3:40566488..40566502,+!p3@ZNF621!0.66!7.06!ZNF621;;chr10:8097321..8097348,+!p4@GATA3!0.66!3.53!GATA3;;chr1:209979449..209979460,-!p3@IRF6!0.66!3.53!IRF6;;chr19:58694421..58694485,+!p1@ZNF274!0.65!21.17!ZNF274;;chr8:22550982..22550999,-!p1@EGR3!0.65!10.94!EGR3;;chr1:59249645..59249656,-!p4@JUN!0.65!9.88!JUN;;chr19:33793430..33793447,-!p1@CEBPA!0.63!15.88!CEBPA;;chr17:41622925..41622976,-!p3@ETV4!0.63!5.29!ETV4;;chr5:72744562..72744573,-!p3@FOXD1!0.63!4.23!FOXD1;;chr12:80084737..80084763,-!p3@PAWR!0.62!13.76!PAWR;;chr17:46687959..46688007,-!p2@HOXB7!0.62!4.59!HOXB7;;chr15:101069113..101069169,-!p1@CERS3!0.62!3.18!CERS3;;chr15:67418099..67418118,+!p16@SMAD3!0.62!3.18!SMAD3;;chr17:46703240..46703257,-!p6@HOXB9!0.62!3.18!HOXB9;;chr8:102504690..102504704,+!p3@GRHL2!0.62!3.18!GRHL2;;chr12:66357214..66357233,+!p13@HMGA2!0.62!3.18!HMGA2;;chr19:58740449..58740456,+!p3@ZNF544!0.62!3.18!ZNF544;;chr20:18038521..18038571,-!p1@OVOL2!0.62!3.18!OVOL2;;chr7:99613212..99613236,+!p1@ZKSCAN1!0.61!129.51!ZKSCAN1;;chr19:9695169..9695188,-!p1@ZNF121!0.61!65.64!ZNF121;;chr6:28973366..28973394,-!p2@ZNF311!0.61!3.88!ZNF311;;chr6:34204672..34204692,+!p1@HMGA1!0.60!407.24!HMGA1;;chr3:193853927..193853944,+!p1@HES1!0.60!118.93!HES1;;chr12:7079780..7079791,-!p2@PHB2!0.60!18.35!PHB2;;chr14:73360799..73360817,-!p1@DPF3!0.60!12.00!DPF3;;chr13:45010939..45011033,-!p1@TSC22D1!0.59!235.73!TSC22D1;;chr4:47916588..47916607,-!p1@NFXL1!0.59!29.29!NFXL1;;chr20:48599506..48599526,+!p1@SNAI1!0.59!22.23!SNAI1;;chr7:99156145..99156207,+!p5@ZNF655!0.59!11.65!ZNF655;;chr18:19749541..19749557,+!p1@GATA6!0.59!10.59!GATA6;;chr12:66218212..66218244,+!p5@HMGA2!0.59!4.59!HMGA2;;chr11:6947647..6947698,+!p2@ZNF215!0.59!4.23!ZNF215;;chr3:169490606..169490621,+!p3@MYNN!0.59!4.23!MYNN;;chr20:55204351..55204377,+!p1@TFAP2C!0.59!3.88!TFAP2C;;chr7:27135591..27135658,-!p1@HOXA1!0.58!6.00!HOXA1;;chr18:19749517..19749531,+!p3@GATA6!0.58!5.65!GATA6;;chr1:24645921..24645973,+!p2@GRHL3!0.58!2.82!GRHL3;;chr22:24093154..24093183,-!p2@ZNF70!0.58!2.82!ZNF70;;chr3:189507460..189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| |expression_enrichment_score=chr11:34642612..34642646,+!p1@EHF!2.32!208.91!EHF;;chr1:209979467..209979494,-!p1@IRF6!2.27!208.91!IRF6;;chr2:176969228..176969260,+!p1@HOXD11!1.74!53.64!HOXD11;;chr12:66218598..66218645,+!p2@HMGA2!1.69!212.44!HMGA2;;chr15:83953397..83953425,-!p1@BNC1!1.66!50.46!BNC1;;chr3:189507432..189507459,+!p1@TP63!1.64!42.70!TP63;;chr2:114036488..114036504,-!p1@PAX8!1.59!38.11!PAX8;;chr6:1312325..1312340,+!p1@FOXQ1!1.49!48.35!FOXQ1;;chr10:8096631..8096660,+!p1@GATA3!1.49!36.35!GATA3;;chr12:77459306..77459365,-!p1@E2F7!1.48!346.90!E2F7;;chr1:209979411..209979433,-!p2@IRF6!1.47!28.58!IRF6;;chr12:66218255..66218304,+!p3@HMGA2!1.45!71.64!HMGA2;;chr11:65667884..65667895,-!p2@FOSL1!1.44!100.58!FOSL1;;chr12:66218836..66218888,+!p1@HMGA2!1.43!232.20!HMGA2;;chr12:54785054..54785072,-!p4@ZNF385A!1.40!27.17!ZNF385A;;chr6:10412600..10412637,-!p1@TFAP2A!1.39!39.17!TFAP2A;;chr12:54785074..54785122,-!p2@ZNF385A!1.39!36.00!ZNF385A;;chr3:111314186..111314204,-!p1@ZBED2!1.39!23.29!ZBED2;;chr12:66218003..66218018,+!p9@HMGA2!1.38!27.53!HMGA2;;chr10:8096772..8096787,+!p2@GATA3!1.33!24.00!GATA3;;chr1:6479968..6479986,-!p1@HES2!1.33!20.47!HES2;;chr15:67418119..67418162,+!p5@SMAD3!1.32!21.88!SMAD3;;chr17:8027418..8027432,-!p1@HES7!1.32!20.12!HES7;;chr5:72744594..72744609,-!p1@FOXD1!1.30!83.99!FOXD1;;chr11:120107344..120107351,+!p1@POU2F3!1.28!21.88!POU2F3;;chr12:27485762..27485776,+!p3@ARNTL2!1.27!46.94!ARNTL2;;chr11:65667846..65667868,-!p1@FOSL1!1.25!428.77!FOSL1;;chr17:70117153..70117174,+!p1@SOX9!1.24!166.57!SOX9;;chr13:36788658..36788703,-!p2@CCDC169-SOHLH2,p2@SOHLH2!1.24!16.23!SOHLH2;;chr11:34642656..34642667,+!p2@EHF!1.22!15.53!EHF;;chr1:201979703..201979721,+!p2@ELF3!1.22!15.53!ELF3;;chr15:67418047..67418093,+!p4@SMAD3!1.21!19.06!SMAD3;;chr7:101917447..101917479,+!p4@CUX1!1.18!14.12!CUX1;;chr8:102504651..102504683,+!p1@GRHL2!1.18!14.12!GRHL2;;chr8:10588010..10588030,-!p1@SOX7!1.17!13.76!SOX7;;chr2:176969179..176969226,+!p2@HOXD11!1.16!13.41!HOXD11;;chr5:134369905..134369972,-!p1@PITX1!1.13!19.06!PITX1;;chr5:172662197..172662216,-!p1@NKX2-5!1.11!12.00!NKX2-5;;chr12:66218573..66218596,+!p7@HMGA2!1.09!16.94!HMGA2;;chr3:32023232..32023273,+!p1@ZNF860!1.09!16.23!ZNF860;;chr2:46524897..46524911,+!p2@EPAS1!1.08!31.41!EPAS1;;chr7:28448965..28448994,+!p2@CREB5!1.07!37.76!CREB5;;chr5:137804405..137804444,+!p3@EGR1!1.07!13.06!EGR1;;chr19:45908292..45908374,-!p1@PPP1R13L!1.06!92.81!PPP1R13L;;chr5:134369879..134369898,-!p2@PITX1!1.06!10.59!PITX1;;chr17:7492684..7492778,-!p2@SOX15!1.05!21.88!SOX15;;chr1:24645832..24645853,+!p1@GRHL3!1.04!9.88!GRHL3;;chr10:44101850..44101896,+!p1@ZNF485!1.03!31.05!ZNF485;;chr13:73633131..73633149,+!p1@KLF5!1.01!101.28!KLF5;;chr6:34210478..34210481,+!p8@HMGA1!0.99!8.82!HMGA1;;chr6:10413188..10413249,-!p7@TFAP2A!0.98!8.47!TFAP2A;;chr12:66218443..66218461,+!p8@HMGA2!0.96!10.59!HMGA2;;chr3:37217736..37217753,-!p2@LRRFIP2!0.95!34.23!LRRFIP2;;chr12:96588368..96588394,+!p3@ELK3!0.95!21.88!ELK3;;chr5:72744445..72744466,-!p2@FOXD1!0.95!13.41!FOXD1;;chr19:33865009..33865090,+!p3@CEBPG!0.95!10.59!CEBPG;;chr19:45971246..45971265,+!p1@FOSB!0.94!148.92!FOSB;;chr7:101917407..101917443,+!p3@CUX1!0.94!7.76!CUX1;;chr7:28610099..28610113,+!p5@CREB5!0.94!7.76!CREB5;;chr21:36421535..36421610,-!p2@RUNX1!0.93!27.53!RUNX1;;chr6:106534192..106534224,+!p1@PRDM1!0.92!21.17!PRDM1;;chr15:74833584..74833626,+!p1@ARID3B!0.92!17.64!ARID3B;;chr10:44101902..44101932,+!p2@ZNF485!0.92!15.17!ZNF485;;chr19:53496768..53496799,-!p1@ZNF702P!0.92!11.65!ZNF702P;;chr6:10412392..10412409,-!p4@TFAP2A!0.92!8.47!TFAP2A;;chr11:65686732..65686756,+!p2@DRAP1!0.91!31.41!DRAP1;;chr12:66218378..66218401,+!p6@HMGA2!0.91!11.29!HMGA2;;chr10:64018918..64018936,+!p2@ZNF365!0.91!7.06!ZNF365;;chr1:158979792..158979814,+!p2@IFI16!0.90!69.87!IFI16;;chr7:99156434..99156510,+!p2@ZNF655!0.90!44.46!ZNF655;;chr5:137801160..137801176,+!p1@EGR1!0.89!706.85!EGR1;;chr10:44070016..44070069,-!p1@ZNF239!0.89!21.17!ZNF239;;chr10:8095593..8095625,+!p3@GATA3!0.89!8.12!GATA3;;chr17:35294075..35294102,+!p1@ENST00000559335!0.89!6.71!LHX1;;chr3:141087562..141087594,+!p12@ZBTB38!0.89!6.71!ZBTB38;;chr10:43134001..43134026,-!p1@ZNF33B!0.88!31.05!ZNF33B;;chr11:64764435..64764449,-!p1@BATF2!0.88!9.18!BATF2;;chr7:28725740..28725778,+!p1@CREB5!0.87!60.70!CREB5;;chr19:45579725..45579743,-!p1@ZNF296!0.87!30.35!ZNF296;;chr10:64134120..64134183,+!p1@ZNF365!0.87!7.76!ZNF365;;chr12:27485823..27485868,+!p2@ARNTL2!0.85!26.11!ARNTL2;;chr18:3447536..3447542,+!p23@TGIF1!0.85!6.00!TGIF1;;chr2:172967621..172967637,-!p1@DLX2!0.84!16.59!DLX2;;chr6:106534230..106534254,+!p2@PRDM1!0.84!15.53!PRDM1;;chr5:137804357..137804390,+!p4@EGR1!0.84!7.06!EGR1;;chr6:34204921..34204939,+!p3@HMGA1!0.83!185.27!HMGA1;;chr5:72743793..72743855,-!p4@FOXD1!0.82!6.71!FOXD1;;chr7:99156011..99156036,+!p7@ZNF655!0.82!6.71!ZNF655;;chr11:65668011..65668020,-!p3@FOSL1!0.82!5.65!FOSL1;;chr12:48298765..48298783,-!p2@VDR!0.81!12.00!VDR;;chr8:49833978..49833996,-!p1@SNAI2!0.80!118.93!SNAI2;;chr11:64073022..64073056,+!p1@ESRRA!0.80!69.52!ESRRA;;chr8:49833948..49833973,-!p2@SNAI2!0.80!36.70!SNAI2;;chr7:101917482..101917507,+!p6@CUX1!0.80!5.29!CUX1;;chr1:24646263..24646277,+!p4@GRHL3!0.80!5.29!GRHL3;;chr15:67418177..67418204,+!p9@SMAD3!0.80!5.29!SMAD3;;chr16:86612320..86612394,+!p1@FOXL1!0.80!5.29!FOXL1;;chr12:66218420..66218439,+!p12@HMGA2!0.80!5.29!HMGA2;;chr12:66218904..66218913,+!p11@HMGA2!0.80!5.29!HMGA2;;chr12:96588143..96588185,+!p1@ELK3!0.79!68.46!ELK3;;chr7:99156314..99156372,+!p4@ZNF655!0.78!18.00!ZNF655;;chr6:10412576..10412599,-!p5@TFAP2A!0.77!4.94!TFAP2A;;chr14:37131058..37131139,+!p1@PAX9!0.77!4.94!PAX9;;chr1:43148855..43148908,+!p4@YBX1!0.76!7.76!YBX1;;chr20:50721803..50721857,-!p2@ZFP64!0.76!7.76!ZFP64;;chr3:141087339..141087387,+!p2@ZBTB38!0.75!52.93!ZBTB38;;chr19:12203100..12203132,+!p1@ZNF788!0.75!9.88!ZNF788;;chr19:57792157..57792170,+!p6@ZNF460!0.75!7.06!ZNF460;;chr1:40367668..40367684,-!p2@MYCL1!0.75!4.59!MYCL1;;chr12:54393880..54393962,+!p1@HOXC9!0.75!4.59!HOXC9;;chr12:66218923..66218934,+!p14@HMGA2!0.75!4.59!HMGA2;;chr12:66358080..66358094,+!p15@HMGA2!0.75!4.59!HMGA2;;chr9:100615499..100615519,+!p1@FOXE1!0.75!4.59!FOXE1;;chr3:178789220..178789255,-!p6@ZMAT3!0.75!4.59!ZMAT3;;chr9:137263790..137263815,+!p7@RXRA!0.75!4.59!RXRA;;chr11:128392273..128392308,-!p2@ETS1!0.73!20.47!ETS1;;chr19:9785724..9785740,-!p2@ZNF562!0.73!19.06!ZNF562;;chr3:141087393..141087426,+!p3@ZBTB38!0.73!19.06!ZBTB38;;chr19:33864571..33864596,+!p2@CEBPG!0.73!11.65!CEBPG;;chr11:65686802..65686818,+!p6@DRAP1!0.73!8.12!DRAP1;;chr19:53193731..53193767,-!p1@ZNF83!0.72!42.35!ZNF83;;chr3:141868357..141868393,-!p3@TFDP2!0.72!31.41!TFDP2;;chr13:41593425..41593480,-!p1@ELF1!0.72!30.35!ELF1;;chr3:24536253..24536328,-!p1@THRB!0.72!8.47!THRB;;chr2:113999263..113999274,-!p13@PAX8!0.72!4.23!PAX8;;chr1:201979743..201979762,+!p1@ELF3!0.72!4.23!ELF3;;chr15:83953373..83953386,-!p2@BNC1!0.72!4.23!BNC1;;chr17:41622731..41622764,-!p5@ETV4!0.72!4.23!ETV4;;chr5:50679228..50679288,+!p1@ISL1!0.72!4.23!ISL1;;chr1:158979872..158979898,+!p3@IFI16!0.71!14.12!IFI16;;chr7:99613250..99613264,+!p2@ZKSCAN1!0.71!13.41!ZKSCAN1;;chr12:27485785..27485816,+!p1@ARNTL2!0.70!31.76!ARNTL2;;chr1:40367530..40367597,-!p1@MYCL1!0.70!7.76!MYCL1;;chr3:168864315..168864339,-!p2@MECOM!0.70!7.06!MECOM;;chr15:96869114..96869160,+!p11@NR2F2!0.70!5.65!NR2F2;;chr11:47236584..47236679,+!p1@DDB2!0.69!48.70!DDB2;;chr2:192015701..192015743,-!p1@STAT4!0.69!5.65!STAT4;;chr3:69811882..69811898,+!p6@MITF!0.69!3.88!MITF;;chr11:65554528..65554546,+!p1@OVOL1!0.69!3.88!OVOL1;;chr3:150126759..150126784,+!p2@TSC22D2!0.68!19.41!TSC22D2;;chr1:43148792..43148849,+!p2@YBX1!0.68!16.23!YBX1;;chr2:169312600..169312606,+!p2@CERS6!0.68!6.35!CERS6;;chr3:178789522..178789564,-!p2@ZMAT3!0.67!31.41!ZMAT3;;chr12:96588219..96588263,+!p2@ELK3!0.67!30.70!ELK3;;chr4:4291837..4291859,-!p2@LYAR!0.67!13.41!LYAR;;chr10:48355030..48355090,+!p1@ZNF488!0.67!4.94!ZNF488;;chr17:38256822..38256851,-!p1@NR1D1!0.66!32.11!NR1D1;;chr3:40566488..40566502,+!p3@ZNF621!0.66!7.06!ZNF621;;chr10:8097321..8097348,+!p4@GATA3!0.66!3.53!GATA3;;chr1:209979449..209979460,-!p3@IRF6!0.66!3.53!IRF6;;chr19:58694421..58694485,+!p1@ZNF274!0.65!21.17!ZNF274;;chr8:22550982..22550999,-!p1@EGR3!0.65!10.94!EGR3;;chr1:59249645..59249656,-!p4@JUN!0.65!9.88!JUN;;chr19:33793430..33793447,-!p1@CEBPA!0.63!15.88!CEBPA;;chr17:41622925..41622976,-!p3@ETV4!0.63!5.29!ETV4;;chr5:72744562..72744573,-!p3@FOXD1!0.63!4.23!FOXD1;;chr12:80084737..80084763,-!p3@PAWR!0.62!13.76!PAWR;;chr17:46687959..46688007,-!p2@HOXB7!0.62!4.59!HOXB7;;chr15:101069113..101069169,-!p1@CERS3!0.62!3.18!CERS3;;chr15:67418099..67418118,+!p16@SMAD3!0.62!3.18!SMAD3;;chr17:46703240..46703257,-!p6@HOXB9!0.62!3.18!HOXB9;;chr8:102504690..102504704,+!p3@GRHL2!0.62!3.18!GRHL2;;chr12:66357214..66357233,+!p13@HMGA2!0.62!3.18!HMGA2;;chr19:58740449..58740456,+!p3@ZNF544!0.62!3.18!ZNF544;;chr20:18038521..18038571,-!p1@OVOL2!0.62!3.18!OVOL2;;chr7:99613212..99613236,+!p1@ZKSCAN1!0.61!129.51!ZKSCAN1;;chr19:9695169..9695188,-!p1@ZNF121!0.61!65.64!ZNF121;;chr6:28973366..28973394,-!p2@ZNF311!0.61!3.88!ZNF311;;chr6:34204672..34204692,+!p1@HMGA1!0.60!407.24!HMGA1;;chr3:193853927..193853944,+!p1@HES1!0.60!118.93!HES1;;chr12:7079780..7079791,-!p2@PHB2!0.60!18.35!PHB2;;chr14:73360799..73360817,-!p1@DPF3!0.60!12.00!DPF3;;chr13:45010939..45011033,-!p1@TSC22D1!0.59!235.73!TSC22D1;;chr4:47916588..47916607,-!p1@NFXL1!0.59!29.29!NFXL1;;chr20:48599506..48599526,+!p1@SNAI1!0.59!22.23!SNAI1;;chr7:99156145..99156207,+!p5@ZNF655!0.59!11.65!ZNF655;;chr18:19749541..19749557,+!p1@GATA6!0.59!10.59!GATA6;;chr12:66218212..66218244,+!p5@HMGA2!0.59!4.59!HMGA2;;chr11:6947647..6947698,+!p2@ZNF215!0.59!4.23!ZNF215;;chr3:169490606..169490621,+!p3@MYNN!0.59!4.23!MYNN;;chr20:55204351..55204377,+!p1@TFAP2C!0.59!3.88!TFAP2C;;chr7:27135591..27135658,-!p1@HOXA1!0.58!6.00!HOXA1;;chr18:19749517..19749531,+!p3@GATA6!0.58!5.65!GATA6;;chr1:24645921..24645973,+!p2@GRHL3!0.58!2.82!GRHL3;;chr22:24093154..24093183,-!p2@ZNF70!0.58!2.82!ZNF70;;chr3:189507460..189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| ||
Line 37: | Line 40: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/squamous%2520cell%2520carcinoma%2520cell%2520line%253aT3M-5.CNhs11739.10616-108G4.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/squamous%2520cell%2520carcinoma%2520cell%2520line%253aT3M-5.CNhs11739.10616-108G4.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/squamous%2520cell%2520carcinoma%2520cell%2520line%253aT3M-5.CNhs11739.10616-108G4.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/squamous%2520cell%2520carcinoma%2520cell%2520line%253aT3M-5.CNhs11739.10616-108G4.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/squamous%2520cell%2520carcinoma%2520cell%2520line%253aT3M-5.CNhs11739.10616-108G4.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10616-108G4 | |id=FF:10616-108G4 | ||
|is_a=EFO:0002091;;FF:0000210;;FF:0102024 | |is_a=EFO:0002091;;FF:0000210;;FF:0102024 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs11739 | |||
|library_id_phase_based=2:CNhs11739 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10616 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10616 | |||
|name=squamous cell carcinoma cell line:T3M-5 | |name=squamous cell carcinoma cell line:T3M-5 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 45: | Line 59: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11739,LSID819,release009,COMPLETED | |profile_hcage=CNhs11739,LSID819,release009,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| ||
Line 84: | Line 99: | ||
|top_motifs=ELK1,4_GABP{A,B1}:2.20699747775;TP53:1.64690689655;POU1F1:1.51214667929;ZEB1:1.3937975203;POU2F1..3:1.3313972956;bHLH_family:1.16923940776;VSX1,2:1.03627752038;SNAI1..3:1.00694729207;ONECUT1,2:1.0068024684;TBX4,5:0.98830854121;BACH2:0.906408023434;ARID5B:0.890436894487;TEF:0.867396002379;TLX2:0.852685414825;FOSL2:0.834576024737;FOXQ1:0.815283922985;GLI1..3:0.796792583696;FOS_FOS{B,L1}_JUN{B,D}:0.775603246037;MYOD1:0.754732347822;PPARG:0.741005526116;ELF1,2,4:0.650800929978;POU6F1:0.593314014355;FOXD3:0.547828380745;ADNP_IRX_SIX_ZHX:0.523979442044;POU3F1..4:0.516440455831;HLF:0.467374322651;NFE2:0.465831631254;SOX17:0.462351674904;IKZF1:0.444294961848;ZBTB6:0.437364186017;TEAD1:0.428411357327;NKX2-1,4:0.417154116209;FOXM1:0.401205275667;HOXA9_MEIS1:0.399076222244;TBP:0.362016135754;HOX{A6,A7,B6,B7}:0.347953635309;PITX1..3:0.345542291976;LEF1_TCF7_TCF7L1,2:0.342138612558;FOXN1:0.319522074682;RBPJ:0.306087779687;HOX{A4,D4}:0.258786365974;OCT4_SOX2{dimer}:0.204972078323;NANOG:0.197451266859;NKX3-1:0.196268199665;NKX3-2:0.193916633732;PAX2:0.191059645706;ZBTB16:0.165239440408;ALX1:0.162223496661;LMO2:0.127023136019;GFI1:0.106085404479;PDX1:0.104736224694;TFDP1:0.0890169554498;NFIX:0.0865751720597;STAT5{A,B}:0.0860859160913;ATF4:0.0751152990267;PAX1,9:0.070735850862;ZNF143:0.0677370820329;ATF5_CREB3:0.0568815228559;FOX{F1,F2,J1}:0.0554853737149;HES1:0.0477668763483;IRF7:0.0390697745766;PRDM1:0.0349445901041;SPZ1:0.0341057989097;NFKB1_REL_RELA:0.0108199514261;GZF1:0.00172625731213;CRX:-0.00327923785429;AIRE:-0.00526347873271;AR:-0.00709413732587;CEBPA,B_DDIT3:-0.0155953317827;TFAP2{A,C}:-0.0164717589512;CDC5L:-0.039870736456;GTF2A1,2:-0.0659185948281;FOXA2:-0.0760936636707;ZNF148:-0.0823514925837;T:-0.0847885670641;CREB1:-0.0877646710835;NFIL3:-0.103804373331;ATF2:-0.116718830473;GATA6:-0.130188155028;AHR_ARNT_ARNT2:-0.139828582475;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.140462926885;SMAD1..7,9:-0.141078706786;PAX8:-0.143820581616;EN1,2:-0.144020863817;PAX4:-0.147931007804;TLX1..3_NFIC{dimer}:-0.159190221946;ATF6:-0.165240031047;REST:-0.168339711222;ETS1,2:-0.173761113614;GFI1B:-0.177450972997;MTF1:-0.180030587416;TFCP2:-0.180432096119;YY1:-0.227184053207;XCPE1{core}:-0.270059076654;FOXP1:-0.273640878882;NR1H4:-0.274500790996;UFEwm:-0.276183910742;CDX1,2,4:-0.277727261441;RFX2..5_RFXANK_RFXAP:-0.283073895326;SPI1:-0.287070677963;NFY{A,B,C}:-0.287575742421;HNF1A:-0.288850682003;DMAP1_NCOR{1,2}_SMARC:-0.302768302244;FOX{D1,D2}:-0.306312936222;FOX{I1,J2}:-0.330916788912;HIC1:-0.334404059626;NR6A1:-0.336077199773;NHLH1,2:-0.343797343235;ZFP161:-0.348303270891;MYBL2:-0.357858522228;MED-1{core}:-0.368096449745;RFX1:-0.375797884352;ZIC1..3:-0.381599444697;PRRX1,2:-0.389014732211;SP1:-0.393380866504;TOPORS:-0.40034252857;MEF2{A,B,C,D}:-0.402513421254;E2F1..5:-0.40898966897;SPIB:-0.424408344657;HOX{A5,B5}:-0.432115969847;SOX{8,9,10}:-0.434014419407;IRF1,2:-0.435253618494;KLF4:-0.454950261388;EP300:-0.471029584882;NFE2L2:-0.475849714813;XBP1:-0.488116551441;MYB:-0.49328612538;JUN:-0.506663730196;NRF1:-0.5104834559;SRF:-0.511349755147;LHX3,4:-0.524349675333;EGR1..3:-0.537542864007;NKX2-2,8:-0.539616288777;NKX2-3_NKX2-5:-0.54084244149;MTE{core}:-0.548816687959;TFAP2B:-0.584919409379;PAX6:-0.601846431291;ZNF423:-0.602879224337;TFAP4:-0.621902720699;SOX2:-0.622273928688;BPTF:-0.623050907503;HNF4A_NR2F1,2:-0.627649150688;GTF2I:-0.645545986713;PBX1:-0.647241173534;EVI1:-0.657698210348;CUX2:-0.661619275701;RORA:-0.663096765488;ESR1:-0.67211617827;BREu{core}:-0.680342647361;PAX5:-0.691741315441;FOXL1:-0.694615499685;HBP1_HMGB_SSRP1_UBTF:-0.698234781805;POU5F1:-0.700780254215;HAND1,2:-0.70849225329;HIF1A:-0.715262522038;MAFB:-0.718086421628;STAT2,4,6:-0.736022693726;FOXO1,3,4:-0.778720975387;RXR{A,B,G}:-0.780287298299;PAX3,7:-0.783224689557;MYFfamily:-0.785537609176;TAL1_TCF{3,4,12}:-0.788858735175;DBP:-0.826869825777;RUNX1..3:-0.831945183179;GCM1,2:-0.843929309452;NFATC1..3:-0.855842162468;SREBF1,2:-0.865961148587;MAZ:-0.907761457793;HMGA1,2:-0.935177156742;NR3C1:-0.943628756756;ZNF384:-0.975768954968;IKZF2:-0.984229707559;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.991059119653;NKX6-1,2:-1.009375593;NR5A1,2:-1.03510866895;TGIF1:-1.04520899516;ALX4:-1.08902631381;PATZ1:-1.12125727086;STAT1,3:-1.13003903238;EBF1:-1.19016849318;HSF1,2:-1.19414273825;RREB1:-1.22831493838;SOX5:-1.27099482947;ZNF238:-1.28042972054;NFE2L1:-1.3151860105;GATA4:-1.32146343781;RXRA_VDR{dimer}:-1.39731661232;NANOG{mouse}:-1.46759813414;HMX1:-1.5174585526;MZF1:-1.52139571826;ESRRA:-1.65567376086;FOXP3:-1.81382814498 | |top_motifs=ELK1,4_GABP{A,B1}:2.20699747775;TP53:1.64690689655;POU1F1:1.51214667929;ZEB1:1.3937975203;POU2F1..3:1.3313972956;bHLH_family:1.16923940776;VSX1,2:1.03627752038;SNAI1..3:1.00694729207;ONECUT1,2:1.0068024684;TBX4,5:0.98830854121;BACH2:0.906408023434;ARID5B:0.890436894487;TEF:0.867396002379;TLX2:0.852685414825;FOSL2:0.834576024737;FOXQ1:0.815283922985;GLI1..3:0.796792583696;FOS_FOS{B,L1}_JUN{B,D}:0.775603246037;MYOD1:0.754732347822;PPARG:0.741005526116;ELF1,2,4:0.650800929978;POU6F1:0.593314014355;FOXD3:0.547828380745;ADNP_IRX_SIX_ZHX:0.523979442044;POU3F1..4:0.516440455831;HLF:0.467374322651;NFE2:0.465831631254;SOX17:0.462351674904;IKZF1:0.444294961848;ZBTB6:0.437364186017;TEAD1:0.428411357327;NKX2-1,4:0.417154116209;FOXM1:0.401205275667;HOXA9_MEIS1:0.399076222244;TBP:0.362016135754;HOX{A6,A7,B6,B7}:0.347953635309;PITX1..3:0.345542291976;LEF1_TCF7_TCF7L1,2:0.342138612558;FOXN1:0.319522074682;RBPJ:0.306087779687;HOX{A4,D4}:0.258786365974;OCT4_SOX2{dimer}:0.204972078323;NANOG:0.197451266859;NKX3-1:0.196268199665;NKX3-2:0.193916633732;PAX2:0.191059645706;ZBTB16:0.165239440408;ALX1:0.162223496661;LMO2:0.127023136019;GFI1:0.106085404479;PDX1:0.104736224694;TFDP1:0.0890169554498;NFIX:0.0865751720597;STAT5{A,B}:0.0860859160913;ATF4:0.0751152990267;PAX1,9:0.070735850862;ZNF143:0.0677370820329;ATF5_CREB3:0.0568815228559;FOX{F1,F2,J1}:0.0554853737149;HES1:0.0477668763483;IRF7:0.0390697745766;PRDM1:0.0349445901041;SPZ1:0.0341057989097;NFKB1_REL_RELA:0.0108199514261;GZF1:0.00172625731213;CRX:-0.00327923785429;AIRE:-0.00526347873271;AR:-0.00709413732587;CEBPA,B_DDIT3:-0.0155953317827;TFAP2{A,C}:-0.0164717589512;CDC5L:-0.039870736456;GTF2A1,2:-0.0659185948281;FOXA2:-0.0760936636707;ZNF148:-0.0823514925837;T:-0.0847885670641;CREB1:-0.0877646710835;NFIL3:-0.103804373331;ATF2:-0.116718830473;GATA6:-0.130188155028;AHR_ARNT_ARNT2:-0.139828582475;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.140462926885;SMAD1..7,9:-0.141078706786;PAX8:-0.143820581616;EN1,2:-0.144020863817;PAX4:-0.147931007804;TLX1..3_NFIC{dimer}:-0.159190221946;ATF6:-0.165240031047;REST:-0.168339711222;ETS1,2:-0.173761113614;GFI1B:-0.177450972997;MTF1:-0.180030587416;TFCP2:-0.180432096119;YY1:-0.227184053207;XCPE1{core}:-0.270059076654;FOXP1:-0.273640878882;NR1H4:-0.274500790996;UFEwm:-0.276183910742;CDX1,2,4:-0.277727261441;RFX2..5_RFXANK_RFXAP:-0.283073895326;SPI1:-0.287070677963;NFY{A,B,C}:-0.287575742421;HNF1A:-0.288850682003;DMAP1_NCOR{1,2}_SMARC:-0.302768302244;FOX{D1,D2}:-0.306312936222;FOX{I1,J2}:-0.330916788912;HIC1:-0.334404059626;NR6A1:-0.336077199773;NHLH1,2:-0.343797343235;ZFP161:-0.348303270891;MYBL2:-0.357858522228;MED-1{core}:-0.368096449745;RFX1:-0.375797884352;ZIC1..3:-0.381599444697;PRRX1,2:-0.389014732211;SP1:-0.393380866504;TOPORS:-0.40034252857;MEF2{A,B,C,D}:-0.402513421254;E2F1..5:-0.40898966897;SPIB:-0.424408344657;HOX{A5,B5}:-0.432115969847;SOX{8,9,10}:-0.434014419407;IRF1,2:-0.435253618494;KLF4:-0.454950261388;EP300:-0.471029584882;NFE2L2:-0.475849714813;XBP1:-0.488116551441;MYB:-0.49328612538;JUN:-0.506663730196;NRF1:-0.5104834559;SRF:-0.511349755147;LHX3,4:-0.524349675333;EGR1..3:-0.537542864007;NKX2-2,8:-0.539616288777;NKX2-3_NKX2-5:-0.54084244149;MTE{core}:-0.548816687959;TFAP2B:-0.584919409379;PAX6:-0.601846431291;ZNF423:-0.602879224337;TFAP4:-0.621902720699;SOX2:-0.622273928688;BPTF:-0.623050907503;HNF4A_NR2F1,2:-0.627649150688;GTF2I:-0.645545986713;PBX1:-0.647241173534;EVI1:-0.657698210348;CUX2:-0.661619275701;RORA:-0.663096765488;ESR1:-0.67211617827;BREu{core}:-0.680342647361;PAX5:-0.691741315441;FOXL1:-0.694615499685;HBP1_HMGB_SSRP1_UBTF:-0.698234781805;POU5F1:-0.700780254215;HAND1,2:-0.70849225329;HIF1A:-0.715262522038;MAFB:-0.718086421628;STAT2,4,6:-0.736022693726;FOXO1,3,4:-0.778720975387;RXR{A,B,G}:-0.780287298299;PAX3,7:-0.783224689557;MYFfamily:-0.785537609176;TAL1_TCF{3,4,12}:-0.788858735175;DBP:-0.826869825777;RUNX1..3:-0.831945183179;GCM1,2:-0.843929309452;NFATC1..3:-0.855842162468;SREBF1,2:-0.865961148587;MAZ:-0.907761457793;HMGA1,2:-0.935177156742;NR3C1:-0.943628756756;ZNF384:-0.975768954968;IKZF2:-0.984229707559;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.991059119653;NKX6-1,2:-1.009375593;NR5A1,2:-1.03510866895;TGIF1:-1.04520899516;ALX4:-1.08902631381;PATZ1:-1.12125727086;STAT1,3:-1.13003903238;EBF1:-1.19016849318;HSF1,2:-1.19414273825;RREB1:-1.22831493838;SOX5:-1.27099482947;ZNF238:-1.28042972054;NFE2L1:-1.3151860105;GATA4:-1.32146343781;RXRA_VDR{dimer}:-1.39731661232;NANOG{mouse}:-1.46759813414;HMX1:-1.5174585526;MZF1:-1.52139571826;ESRRA:-1.65567376086;FOXP3:-1.81382814498 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10616-108G4;search_select_hide=table117:FF:10616-108G4 | |||
}} | }} |
Latest revision as of 14:31, 3 June 2020
Name: | squamous cell carcinoma cell line:T3M-5 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs11739 |
Sample type: | cell lines |
Genomic View: | UCSC |
RefEX: | Specific genes |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11739
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11739
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.287 |
10 | 10 | 0.326 |
100 | 100 | 0.925 |
101 | 101 | 0.27 |
102 | 102 | 0.492 |
103 | 103 | 0.166 |
104 | 104 | 0.558 |
105 | 105 | 0.826 |
106 | 106 | 0.0178 |
107 | 107 | 0.00122 |
108 | 108 | 0.247 |
109 | 109 | 0.0085 |
11 | 11 | 0.599 |
110 | 110 | 0.116 |
111 | 111 | 0.481 |
112 | 112 | 0.563 |
113 | 113 | 0.0833 |
114 | 114 | 0.456 |
115 | 115 | 0.905 |
116 | 116 | 0.246 |
117 | 117 | 0.056 |
118 | 118 | 0.957 |
119 | 119 | 0.538 |
12 | 12 | 0.742 |
120 | 120 | 0.281 |
121 | 121 | 0.581 |
122 | 122 | 0.61 |
123 | 123 | 0.839 |
124 | 124 | 0.089 |
125 | 125 | 0.827 |
126 | 126 | 0.233 |
127 | 127 | 0.658 |
128 | 128 | 0.418 |
129 | 129 | 0.0628 |
13 | 13 | 0.0554 |
130 | 130 | 0.956 |
131 | 131 | 0.831 |
132 | 132 | 0.782 |
133 | 133 | 0.758 |
134 | 134 | 0.0437 |
135 | 135 | 0.0323 |
136 | 136 | 0.0316 |
137 | 137 | 0.455 |
138 | 138 | 0.117 |
139 | 139 | 0.448 |
14 | 14 | 0.999 |
140 | 140 | 0.227 |
141 | 141 | 0.774 |
142 | 142 | 0.628 |
143 | 143 | 0.764 |
144 | 144 | 0.543 |
145 | 145 | 0.271 |
146 | 146 | 0.795 |
147 | 147 | 0.558 |
148 | 148 | 0.714 |
149 | 149 | 0.961 |
15 | 15 | 0.435 |
150 | 150 | 0.588 |
151 | 151 | 0.301 |
152 | 152 | 0.128 |
153 | 153 | 0.898 |
154 | 154 | 0.642 |
155 | 155 | 0.767 |
156 | 156 | 0.433 |
157 | 157 | 0.856 |
158 | 158 | 0.685 |
159 | 159 | 0.482 |
16 | 16 | 0.0296 |
160 | 160 | 0.696 |
161 | 161 | 0.308 |
162 | 162 | 0.455 |
163 | 163 | 0.538 |
164 | 164 | 0.604 |
165 | 165 | 0.284 |
166 | 166 | 0.142 |
167 | 167 | 0.36 |
168 | 168 | 0.801 |
169 | 169 | 0.0475 |
17 | 17 | 0.119 |
18 | 18 | 0.157 |
19 | 19 | 0.982 |
2 | 2 | 0.851 |
20 | 20 | 0.257 |
21 | 21 | 0.903 |
22 | 22 | 0.815 |
23 | 23 | 0.502 |
24 | 24 | 0.197 |
25 | 25 | 0.786 |
26 | 26 | 0.206 |
27 | 27 | 0.71 |
28 | 28 | 0.0801 |
29 | 29 | 0.421 |
3 | 3 | 0.179 |
30 | 30 | 0.392 |
31 | 31 | 0.854 |
32 | 32 | 0.224 |
33 | 33 | 0.0212 |
34 | 34 | 0.128 |
35 | 35 | 0.397 |
36 | 36 | 0.0362 |
37 | 37 | 0.224 |
38 | 38 | 0.181 |
39 | 39 | 0.698 |
4 | 4 | 0.538 |
40 | 40 | 0.196 |
41 | 41 | 0.153 |
42 | 42 | 0.154 |
43 | 43 | 0.694 |
44 | 44 | 0.896 |
45 | 45 | 0.378 |
46 | 46 | 0.0907 |
47 | 47 | 0.265 |
48 | 48 | 0.24 |
49 | 49 | 0.71 |
5 | 5 | 0.349 |
50 | 50 | 0.416 |
51 | 51 | 0.905 |
52 | 52 | 0.874 |
53 | 53 | 0.452 |
54 | 54 | 0.445 |
55 | 55 | 0.0245 |
56 | 56 | 0.444 |
57 | 57 | 0.0319 |
58 | 58 | 0.886 |
59 | 59 | 0.848 |
6 | 6 | 0.95 |
60 | 60 | 0.257 |
61 | 61 | 0.607 |
62 | 62 | 0.815 |
63 | 63 | 0.126 |
64 | 64 | 0.948 |
65 | 65 | 0.358 |
66 | 66 | 0.00476 |
67 | 67 | 0.396 |
68 | 68 | 0.124 |
69 | 69 | 0.951 |
7 | 7 | 0.933 |
70 | 70 | 0.019 |
71 | 71 | 0.136 |
72 | 72 | 0.736 |
73 | 73 | 0.0294 |
74 | 74 | 0.817 |
75 | 75 | 0.0322 |
76 | 76 | 0.278 |
77 | 77 | 0.592 |
78 | 78 | 0.0283 |
79 | 79 | 0.107 |
8 | 8 | 0.279 |
80 | 80 | 0.611 |
81 | 81 | 0.7 |
82 | 82 | 0.647 |
83 | 83 | 0.485 |
84 | 84 | 0.604 |
85 | 85 | 0.969 |
86 | 86 | 0.277 |
87 | 87 | 0.00335 |
88 | 88 | 0.915 |
89 | 89 | 0.332 |
9 | 9 | 0.366 |
90 | 90 | 0.253 |
91 | 91 | 0.234 |
92 | 92 | 0.49 |
93 | 93 | 0.403 |
94 | 94 | 0.765 |
95 | 95 | 0.251 |
96 | 96 | 0.293 |
97 | 97 | 0.221 |
98 | 98 | 0.967 |
99 | 99 | 0.652 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11739
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0102024 squamous cell carcinoma cell line sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000076 (squamous epithelial cell)
0000255 (eukaryotic cell)
DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)
1749 (squamous cell carcinoma)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0102024 (squamous cell carcinoma cell line sample)
0101120 (epithelial cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA