FFCP PHASE1:Hg19::chr6:105404899..105404931,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr6:105404899..105404931,+
|short_description=p3@LIN28B
|description=CAGE_peak_3_at_LIN28B_5end
|association_with_transcript=0bp_to_ENST00000345080,NM_00100431...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=389421 | |EntrezGene=389421 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=32207 | |HGNC=32207 | ||
|TSSclassifier=strong | |||
|UniProt=Q6ZN17 | |UniProt=Q6ZN17 | ||
|association_with_transcript=0bp_to_ENST00000345080,NM_001004317,uc003pqv.1_5end | |||
|cluster_id=chr6:105404899..105404931,+ | |||
|coexpression_cluster_id=C1967 | |||
|description=CAGE_peak_3_at_LIN28B_5end | |||
|id=chr6:105404899..105404931,+ | |||
|ontology_enrichment_celltype=CL:0002322!1.81e-10!5;CL:0000133!5.30e-10!59;CL:0000333!1.69e-07!41;CL:0000221!2.10e-07!71 | |||
|ontology_enrichment_celltype_v019=CL:0002322;5.84e-15;5!CL:0002321;2.78e-11;15!CL:0002319;8.18e-09;25!CL:0000123;7.06e-07;2!CL:0000242;7.06e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,3.94e-15,5;CL:0002319,9.72e-09,25;CL:0000333,1.52e-08,41;CL:0000133,2.41e-08,59;CL:0000242,5.66e-07,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:14566!1.28e-23!239;DOID:162!1.96e-22!235;DOID:3095!1.10e-17!22;DOID:2994!1.10e-17!22;DOID:0050687!2.56e-11!143;DOID:171!6.85e-11!10;DOID:169!1.06e-10!6;DOID:1240!2.87e-10!39;DOID:2531!4.75e-10!51;DOID:0060083!4.75e-10!51;DOID:0050686!3.70e-09!137;DOID:8692!5.99e-07!31;DOID:1036!9.41e-07!8 | |||
|ontology_enrichment_disease_v019=DOID:3095;2.94e-13;22!DOID:2994;2.94e-13;22!DOID:1036;4.53e-10;8!DOID:8692;9.95e-10;31!DOID:171;1.05e-09;10!DOID:1240;1.24e-08;39!DOID:169;1.15e-07;6!DOID:2531;1.98e-07;51!DOID:0060083;1.98e-07;51!DOID:74;7.06e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:14566,2.16e-18,239;DOID:162,7.06e-17,235;DOID:3095,3.21e-13,22;DOID:2994,3.21e-13,22;DOID:1240,2.65e-10,39;DOID:1036,5.42e-10,8;DOID:8692,6.77e-10,31;DOID:2531,7.97e-10,51;DOID:0060083,7.97e-10,51;DOID:171,1.39e-09,10;DOID:0050687,1.03e-08,143;DOID:0050686,1.04e-07,137;DOID:169,1.40e-07,6;DOID:74,9.64e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0000010!1.14e-09!8;UBERON:0000013!3.10e-09!5;UBERON:0002410!3.10e-09!5 | |||
|ontology_enrichment_uberon_v019=UBERON:0000010;4.96e-08;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000010,6.21e-08,8 | |||
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| ||
|short_description=p3@LIN28B | |||
}} | }} |
Latest revision as of 13:53, 19 September 2015
Short description: | p3@LIN28B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_LIN28B_5end |
Coexpression cluster: | C1967_anaplastic_embryonic_hepatoblastoma_chronic_hepatocellular_Wilms_hereditary |
Association with transcript: | 0bp_to_ENST00000345080, NM_001004317, uc003pqv.1_5end |
EntrezGene: | LIN28B |
HGNC: | 32207 |
UniProt: | Q6ZN17 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 3.94e-15 | 5 |
neural cell | 9.72e-09 | 25 |
migratory neural crest cell | 1.52e-08 | 41 |
neurectodermal cell | 2.41e-08 | 59 |
Merkel cell | 5.66e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
peripheral nervous system | 6.21e-08 | 8 |
Ontology term | p-value | n |
---|---|---|
disease of cellular proliferation | 2.16e-18 | 239 |
cancer | 7.06e-17 | 235 |
germ cell and embryonal cancer | 3.21e-13 | 22 |
germ cell cancer | 3.21e-13 | 22 |
leukemia | 2.65e-10 | 39 |
chronic leukemia | 5.42e-10 | 8 |
myeloid leukemia | 6.77e-10 | 31 |
hematologic cancer | 7.97e-10 | 51 |
immune system cancer | 7.97e-10 | 51 |
neuroectodermal tumor | 1.39e-09 | 10 |
cell type cancer | 1.03e-08 | 143 |
organ system cancer | 1.04e-07 | 137 |
neuroendocrine tumor | 1.40e-07 | 6 |
hematopoietic system disease | 9.64e-07 | 2 |