FFCP PHASE1:Hg19::chr6:114178617..114178628,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr6:114178617..114178628,+
|short_description=p3@MARCKS
|description=CAGE_peak_3_at_MARCKS_5end
|association_with_transcript=76bp_to_ENST00000368635_5end
|Ent...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=4082 | |EntrezGene=4082 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6759 | |HGNC=6759 | ||
|TSSclassifier=strong | |||
|UniProt=P29966 | |UniProt=P29966 | ||
|association_with_transcript=76bp_to_ENST00000368635_5end | |||
|cluster_id=chr6:114178617..114178628,+ | |||
|coexpression_cluster_id=C1258 | |||
|description=CAGE_peak_3_at_MARCKS_5end | |||
|id=chr6:114178617..114178628,+ | |||
|ontology_enrichment_celltype=CL:0002057!5.56e-20!42;CL:0000860!3.27e-16!45;CL:0002009!1.18e-14!65;CL:0000766!3.12e-14!76;CL:0002194!6.92e-14!63;CL:0000576!6.92e-14!63;CL:0000040!6.92e-14!63;CL:0000559!6.92e-14!63;CL:0000557!3.16e-11!71;CL:0000839!6.68e-10!70;CL:0002371!1.71e-08!591;CL:0000144!1.03e-07!625 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.44e-14;33!CL:0002057;2.44e-14;33!CL:0000473;4.04e-14;39!CL:0000234;4.04e-14;39!CL:0000576;3.79e-12;48!CL:0000766;6.21e-09;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,8.93e-23,48;CL:0000234,8.93e-23,48;CL:0000860,4.23e-20,42;CL:0002057,4.23e-20,42;CL:0002009,6.17e-17,61;CL:0002194,3.98e-16,59;CL:0000576,3.98e-16,59;CL:0000040,3.98e-16,59;CL:0000559,3.98e-16,59;CL:0000766,4.25e-16,72;CL:0000557,6.41e-13,67;CL:0000839,1.64e-11,66 | |||
|ontology_enrichment_development_v019=CL:0002057;8.83e-15;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000468!6.79e-10!659;UBERON:0002371!1.89e-09!80;UBERON:0004765!3.04e-09!101;UBERON:0001434!3.04e-09!101;UBERON:0001474!9.10e-09!86;UBERON:0000467!1.10e-08!625;UBERON:0000480!1.59e-08!626;UBERON:0002204!1.77e-08!167;UBERON:0003081!1.91e-07!216;UBERON:0002193!7.29e-07!112 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,6.33e-11,76;UBERON:0001434,1.95e-10,100;UBERON:0001474,4.46e-10,82;UBERON:0002204,1.85e-09,167;UBERON:0004765,2.85e-09,90;UBERON:0002405,5.16e-09,93;UBERON:0003081,6.39e-09,203;UBERON:0000926,1.61e-08,315;UBERON:0004120,1.61e-08,315;UBERON:0006603,1.61e-08,315;UBERON:0002050,4.30e-08,564;UBERON:0000923,5.09e-08,560;UBERON:0010316,5.09e-08,560;UBERON:0005291,5.09e-08,560;UBERON:0006598,5.09e-08,560;UBERON:0010317,5.09e-08,560;UBERON:0002532,5.09e-08,560;UBERON:0002193,6.67e-08,108;UBERON:0002390,1.10e-07,98;UBERON:0003061,1.10e-07,98 | |||
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| ||
|short_description=p3@MARCKS | |||
}} | }} |
Latest revision as of 23:33, 19 September 2015
Short description: | p3@MARCKS |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_MARCKS_5end |
Coexpression cluster: | C1258_CD14_Monocytederived_Aortic_Olfactory_spinal_occipital_Lymphatic |
Association with transcript: | 76bp_to_ENST00000368635_5end |
EntrezGene: | MARCKS |
HGNC: | 6759 |
UniProt: | P29966 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 8.93e-23 | 48 |
phagocyte | 8.93e-23 | 48 |
classical monocyte | 4.23e-20 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.23e-20 | 42 |
macrophage dendritic cell progenitor | 6.17e-17 | 61 |
monopoietic cell | 3.98e-16 | 59 |
monocyte | 3.98e-16 | 59 |
monoblast | 3.98e-16 | 59 |
promonocyte | 3.98e-16 | 59 |
myeloid leukocyte | 4.25e-16 | 72 |
granulocyte monocyte progenitor cell | 6.41e-13 | 67 |
myeloid lineage restricted progenitor cell | 1.64e-11 | 66 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 6.33e-11 | 76 |
skeletal system | 1.95e-10 | 100 |
bone element | 4.46e-10 | 82 |
musculoskeletal system | 1.85e-09 | 167 |
skeletal element | 2.85e-09 | 90 |
immune system | 5.16e-09 | 93 |
lateral plate mesoderm | 6.39e-09 | 203 |
mesoderm | 1.61e-08 | 315 |
mesoderm-derived structure | 1.61e-08 | 315 |
presumptive mesoderm | 1.61e-08 | 315 |
embryonic structure | 4.30e-08 | 564 |
germ layer | 5.09e-08 | 560 |
germ layer / neural crest | 5.09e-08 | 560 |
embryonic tissue | 5.09e-08 | 560 |
presumptive structure | 5.09e-08 | 560 |
germ layer / neural crest derived structure | 5.09e-08 | 560 |
epiblast (generic) | 5.09e-08 | 560 |
hemolymphoid system | 6.67e-08 | 108 |
hematopoietic system | 1.10e-07 | 98 |
blood island | 1.10e-07 | 98 |