NonredundantMotifs:12: Difference between revisions
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{{Known_motif | {{Known_motif | ||
|PWM=P0;A;C;G;T!1;86.18062234794844;93.99533239038107;173.767892503535;61.17355021216349!2;72.89561527581266;90.6506364922197;197.11824611032407;54.45289957567156!3;94.6517680339455;91.33833097595416;182.23903818953207;46.88826025459667!4;114.65742574257321;91.02574257425675;161.60820367750952;47.82602545968848!5;71.33267326732604;82.89844413012672;230.25261669023948;30.633663366336375!6;50.139179632248364;31.133804809052098;264.94992927864064;68.89448373408729!7;57.51626591230513;1.0002828854313937;354.85035360678586;1.750495049504938!8;1.0002828854313937;4.2512022630834245;405.73974540310707;4.126166902404491!9;4.001131541725571;8.127298444130046;401.1134370579869;1.8755304101838588!10;97.34002828854244;260.511173974539;21.00594059405924;36.26025459688797!11;18.442715700141306;14.254031117397362;369.5420084865593;12.878642149929194!12;3.000848656294177;6.126732673267275;361.8523338048056;44.137482319660094!13;78.64724186704316;14.504101838755204;298.5844413012708;23.381612446958773!14;39.511173974539986;55.26562942008448;304.96124469589563;15.379349363507648!15;47.38840169731219;229.94002828854207;99.2780763790657;38.51089108910862!16;46.51315417255962;152.4181046676084;130.97454031117294;85.21159830268661!17;106.90523338047981;55.20311173974483;186.74031117397337;66.26874115982999!18;83.27355021216336;69.51966053748167;214.1230551626578;48.20113154172511!19;68.01923620933471;110.03111739745303;189.1159830268729;47.95106082036735!20;75.58387553040959;100.403394625176;186.74031117397337;52.389816124469014 | |||
|entrez_gene_id=6670 | |entrez_gene_id=6670 | ||
|motif_cluster_2013_march_motif_members= | |motif_cluster_2013_march_motif_members= /HOCOMOCO:EGR3_f1~EGR1_f2~EGR2_si~SP3_f1~SP1_f2~SP1_f1~WT1_f1~ZN148_si~EGR4_f1~KLF6_si /HOMER:EGR1_K562-EGR1-ChIP-Seq~EGR2_Thymocytes-Egr2-ChIP-Seq(GSE34254) /JASPAR:MA0079.2;SP1~MA0162.1;Egr1 /SWISSREGULON:PATZ1.p2~MAZ.p2~EGR1..3.p2~SP1.p2 /UNIPROBE:Zfp410_secondary;SCI09~Egr1_primary;SCI09~Sp4_primary;SCI09~Zif268;NBT06~Bcl6b_secondary;SCI09 | ||
|name= | |name=non-redundant12 | ||
|representative_motif_db=HOCOMOCO | |representative_motif_db=HOCOMOCO | ||
|representative_motif_id=SP3_f1 | |representative_motif_id=SP3_f1 | ||
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|uniprot_entry_name=SP3_HUMAN | |uniprot_entry_name=SP3_HUMAN | ||
}} | }} | ||
Latest revision as of 10:51, 5 November 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :non-redundant12
- db :HOCOMOCO
- Id :SP3_f1
- name :
- score :5.013317861704715
- External refs:
- Internal refs:
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Sub Motif Members
