FFCP PHASE1:Hg19::chr6:32977327..32977330,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr6:32977327..32977330,-
|short_description=p3@HLA-DOA
|description=CAGE_peak_3_at_HLA-DOA_5end
|association_with_transcript=6bp_to_ENST00000432150_5end
|Entr...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3111 | |EntrezGene=3111 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4936 | |HGNC=4936 | ||
|TSSclassifier=strong | |||
|UniProt=C9IZS7 | |UniProt=C9IZS7 | ||
|association_with_transcript=6bp_to_ENST00000432150_5end | |||
|cluster_id=chr6:32977327..32977330,- | |||
|coexpression_cluster_id=C1215 | |||
|description=CAGE_peak_3_at_HLA-DOA_5end | |||
|id=chr6:32977327..32977330,- | |||
|ontology_enrichment_celltype=CL:0000738!4.51e-31!140;CL:0000945!8.23e-28!24;CL:0000826!8.23e-28!24;CL:0002087!3.76e-27!119;CL:0000988!3.92e-26!182;CL:0000037!6.27e-26!172;CL:0000566!6.27e-26!172;CL:0002031!1.89e-24!124;CL:0002032!8.47e-23!165;CL:0000837!8.47e-23!165;CL:0000542!9.36e-19!53;CL:0000051!9.36e-19!53;CL:0000236!2.34e-18!14;CL:0000838!5.11e-18!52;CL:0000451!2.01e-12!10;CL:0002009!3.08e-10!65;CL:0000990!5.72e-10!8;CL:0000557!1.28e-09!71;CL:0002194!7.81e-09!63;CL:0000576!7.81e-09!63;CL:0000040!7.81e-09!63;CL:0000559!7.81e-09!63;CL:0002057!1.10e-08!42;CL:0000453!1.16e-08!5;CL:0000860!9.94e-08!45;CL:0000763!1.07e-07!112;CL:0000049!1.07e-07!112;CL:0000766!1.29e-07!76;CL:0000839!3.06e-07!70 | |||
|ontology_enrichment_celltype_v019=CL:0000236;8.85e-57;13!CL:0000945;4.75e-55;24!CL:0000542;9.38e-22;53!CL:0000453;1.60e-20;5!CL:0000451;8.75e-20;10!CL:0000990;3.14e-17;8!CL:0000784;7.29e-09;3!CL:0000817;1.51e-07;1!CL:0002032;2.91e-07;1!CL:0000946;2.91e-07;1!CL:0000557;2.91e-07;1!CL:0000786;2.91e-07;1!CL:0000738;5.15e-07;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000236,3.30e-62,14;CL:0000945,6.04e-55,24;CL:0000826,6.04e-55,24;CL:0000838,1.18e-30,52;CL:0000542,5.20e-30,53;CL:0000051,5.20e-30,53;CL:0000738,2.72e-25,136;CL:0000037,2.54e-21,168;CL:0000453,1.16e-20,5;CL:0002032,1.29e-20,161;CL:0000837,1.29e-20,161;CL:0000988,5.61e-20,177;CL:0000451,6.21e-20,10;CL:0002031,5.37e-18,120;CL:0000990,1.89e-17,8;CL:0002087,5.53e-17,115;CL:0000817,5.74e-09,3;CL:0000784,6.22e-09,3;CL:0000134,2.35e-07,354;CL:0000946,3.62e-07,1;CL:0000786,3.62e-07,1;CL:0000980,3.62e-07,1;CL:0002320,4.14e-07,361;CL:0000219,5.50e-07,386 | |||
|ontology_enrichment_development_v019=CL:0000051;9.38e-22;53!UBERON:0010115;2.91e-07;1 | |||
|ontology_enrichment_disease=DOID:0060058!7.74e-09!10 | |||
|ontology_enrichment_disease_v019=DOID:630;2.91e-07;1!DOID:0050177;2.91e-07;1!DOID:0050427;2.91e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:630,2.83e-07,1;DOID:0050177,2.83e-07,1;DOID:0050427,2.83e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0002390!4.11e-16!102;UBERON:0003061!4.11e-16!102;UBERON:0002193!2.45e-15!112;UBERON:0007023!1.08e-11!115;UBERON:0002371!2.47e-08!80;UBERON:0000178!1.33e-07!15;UBERON:0000179!1.33e-07!15;UBERON:0000463!1.33e-07!15;UBERON:0001474!3.42e-07!86;UBERON:0002405!3.95e-07!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0002363;2.91e-07;1!UBERON:0002372;2.91e-07;1!UBERON:0001961;2.91e-07;1!UBERON:0001744;2.91e-07;1!UBERON:0001042;2.91e-07;1!UBERON:0001735;2.91e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002372,2.21e-07,1;UBERON:0001961,2.21e-07,1;UBERON:0001744,2.21e-07,1;UBERON:0001735,2.21e-07,1;UBERON:0002363,4.34e-07,1;UBERON:0007645,4.34e-07,1;UBERON:0007647,4.34e-07,1;UBERON:0010115,4.34e-07,1;UBERON:0002384,8.98e-07,371 | |||
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| ||
|short_description=p3@HLA-DOA | |||
}} | }} |
Latest revision as of 05:05, 18 September 2015
Short description: | p3@HLA-DOA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_HLA-DOA_5end |
Coexpression cluster: | C1215_migratory_CD19_adult_immature_Dendritic_Burkitt_vein |
Association with transcript: | 6bp_to_ENST00000432150_5end |
EntrezGene: | HLA-DOA |
HGNC: | 4936 |
UniProt: | C9IZS7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
B cell | 3.30e-62 | 14 |
lymphocyte of B lineage | 6.04e-55 | 24 |
pro-B cell | 6.04e-55 | 24 |
lymphoid lineage restricted progenitor cell | 1.18e-30 | 52 |
lymphocyte | 5.20e-30 | 53 |
common lymphoid progenitor | 5.20e-30 | 53 |
leukocyte | 2.72e-25 | 136 |
hematopoietic stem cell | 2.54e-21 | 168 |
Langerhans cell | 1.16e-20 | 5 |
hematopoietic oligopotent progenitor cell | 1.29e-20 | 161 |
hematopoietic multipotent progenitor cell | 1.29e-20 | 161 |
hematopoietic cell | 5.61e-20 | 177 |
dendritic cell | 6.21e-20 | 10 |
hematopoietic lineage restricted progenitor cell | 5.37e-18 | 120 |
conventional dendritic cell | 1.89e-17 | 8 |
nongranular leukocyte | 5.53e-17 | 115 |
precursor B cell | 5.74e-09 | 3 |
plasmacytoid dendritic cell | 6.22e-09 | 3 |
mesenchymal cell | 2.35e-07 | 354 |
antibody secreting cell | 3.62e-07 | 1 |
plasma cell | 3.62e-07 | 1 |
plasmablast | 3.62e-07 | 1 |
connective tissue cell | 4.14e-07 | 361 |
motile cell | 5.50e-07 | 386 |
Ontology term | p-value | n |
---|---|---|
tonsil | 2.21e-07 | 1 |
mucosa-associated lymphoid tissue | 2.21e-07 | 1 |
lymphoid tissue | 2.21e-07 | 1 |
tonsillar ring | 2.21e-07 | 1 |
dura mater | 4.34e-07 | 1 |
future meninx | 4.34e-07 | 1 |
ectomeninx | 4.34e-07 | 1 |
future dura mater | 4.34e-07 | 1 |
connective tissue | 8.98e-07 | 371 |
Ontology term | p-value | n |
---|---|---|
genetic disease | 2.83e-07 | 1 |
monogenic disease | 2.83e-07 | 1 |
xeroderma pigmentosum | 2.83e-07 | 1 |