FFCP PHASE1:Hg19::chr7:102553382..102553397,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr7:102553382..102553397,+
|short_description=p3@LRRC17
|description=CAGE_peak_3_at_LRRC17_5end
|association_with_transcript=38bp_to_NM_001031692,NM_005824,uc0...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=10234 | |EntrezGene=10234 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16895 | |HGNC=16895 | ||
|TSSclassifier=strong | |||
|UniProt=Q8N6Y2 | |UniProt=Q8N6Y2 | ||
|association_with_transcript=38bp_to_NM_001031692,NM_005824,uc003vat.2,uc003vau.2_5end | |||
|cluster_id=chr7:102553382..102553397,+ | |||
|coexpression_cluster_id=C4637 | |||
|description=CAGE_peak_3_at_LRRC17_5end | |||
|id=chr7:102553382..102553397,+ | |||
|ontology_enrichment_celltype=CL:0000680!2.21e-32!57;CL:0000056!2.21e-32!57;CL:0000355!2.21e-32!57;CL:0000187!2.65e-30!54;CL:0000183!1.31e-28!59;CL:0000192!9.58e-27!42;CL:0000514!9.58e-27!42;CL:0000393!4.75e-26!60;CL:0000211!4.75e-26!60;CL:0000055!5.96e-24!180;CL:0000359!9.62e-23!32;CL:0000222!6.07e-15!119;CL:0002494!1.89e-11!16;CL:0002539!2.25e-09!10 | |||
|ontology_enrichment_celltype_v019=CL:0000359;8.79e-31;32!CL:0000192;5.63e-27;43!CL:0002494;7.03e-19;16!CL:0000187;3.35e-17;55!CL:0002539;9.64e-15;10!CL:0000393;1.01e-12;61!CL:0000211;1.01e-12;61!CL:0002548;7.93e-09;6!CL:0002595;3.19e-08;5!CL:0000134;9.50e-08;55!CL:0000048;3.19e-07;58!CL:0000723;6.70e-07;61!CL:0000569;9.68e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000192,7.66e-37,43;CL:0000514,7.66e-37,43;CL:0000680,5.90e-35,58;CL:0000056,5.90e-35,58;CL:0000355,5.90e-35,58;CL:0000187,3.41e-33,55;CL:0000359,4.85e-32,32;CL:0000393,1.38e-28,61;CL:0000211,1.38e-28,61;CL:0002494,9.84e-19,16;CL:0000222,5.91e-15,121;CL:0002539,9.19e-15,10;CL:0000048,9.75e-09,427;CL:0002548,1.15e-08,6;CL:0000723,2.75e-08,433;CL:0002595,3.09e-08,5;CL:0000034,1.03e-07,441;CL:0000569,9.86e-07,4;CL:0000011,9.86e-07,4 | |||
|ontology_enrichment_development_v019=CL:0000514;5.63e-27;43!CL:0000355;2.13e-17;58!CL:0000011;9.68e-07;4 | |||
|ontology_enrichment_disease=DOID:2394!4.56e-10!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;1.59e-14;14!DOID:120;6.70e-07;27 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,1.60e-14,14;DOID:120,5.92e-07,27 | |||
|ontology_enrichment_uberon=UBERON:0002385!1.71e-30!63;UBERON:0001015!1.71e-30!63;UBERON:0000383!1.71e-30!63;UBERON:0001134!4.08e-30!61;UBERON:0002036!4.08e-30!61;UBERON:0003082!4.08e-30!61;UBERON:0004872!3.43e-29!84;UBERON:0004290!1.80e-25!70;UBERON:0002049!2.83e-25!79;UBERON:0007798!2.83e-25!79;UBERON:0000914!1.80e-24!83;UBERON:0002329!1.80e-24!83;UBERON:0003077!1.80e-24!83;UBERON:0003059!1.80e-24!83;UBERON:0007282!1.80e-24!83;UBERON:0009618!1.80e-24!83;UBERON:0007285!1.80e-24!83;UBERON:0004535!1.06e-23!110;UBERON:0001009!1.38e-23!113;UBERON:0001637!2.38e-23!42;UBERON:0003509!2.38e-23!42;UBERON:0004572!2.38e-23!42;UBERON:0001981!3.25e-22!60;UBERON:0007500!3.25e-22!60;UBERON:0004537!3.25e-22!60;UBERON:0006965!3.25e-22!60;UBERON:0003914!4.53e-21!118;UBERON:0000490!1.15e-20!138;UBERON:0004573!1.45e-19!33;UBERON:0004571!1.45e-19!33;UBERON:0000055!2.94e-19!69;UBERON:0000486!2.31e-18!82;UBERON:0005256!1.14e-17!143;UBERON:0000119!1.21e-16!312;UBERON:0000483!1.90e-15!309;UBERON:0000481!3.97e-12!347;UBERON:0000477!7.87e-12!286;UBERON:0000025!1.14e-11!194;UBERON:0001135!2.03e-11!15;UBERON:0000948!2.27e-11!24;UBERON:0005498!2.27e-11!24;UBERON:0004140!2.27e-11!24;UBERON:0009881!2.27e-11!24;UBERON:0004141!2.27e-11!24;UBERON:0003084!2.27e-11!24;UBERON:0007005!2.27e-11!24;UBERON:0004139!2.27e-11!24;UBERON:0004291!2.27e-11!24;UBERON:0000922!4.30e-11!612;UBERON:0000947!5.69e-11!21;UBERON:0010191!5.69e-11!21;UBERON:0004111!8.05e-11!241;UBERON:0007100!8.30e-11!27;UBERON:0002050!8.56e-11!605;UBERON:0005423!8.56e-11!605;UBERON:0000468!9.16e-11!659;UBERON:0000923!1.89e-10!604;UBERON:0005291!1.89e-10!604;UBERON:0006598!1.89e-10!604;UBERON:0002532!1.89e-10!604;UBERON:0002100!1.21e-09!216;UBERON:0000475!1.51e-09!365;UBERON:0004237!2.25e-09!10;UBERON:0004695!2.25e-09!10;UBERON:0002111!2.25e-09!10;UBERON:0004178!2.25e-09!10;UBERON:0000467!3.43e-09!625;UBERON:0000480!4.50e-09!626;UBERON:0000926!9.94e-09!448;UBERON:0004120!9.94e-09!448;UBERON:0006603!9.94e-09!448;UBERON:0000479!3.33e-08!787;UBERON:0007625!1.58e-07!11;UBERON:0003104!3.41e-07!238;UBERON:0009142!3.41e-07!238;UBERON:0002200!7.03e-07!11;UBERON:0006876!7.03e-07!11 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;3.77e-26;33!UBERON:0004571;3.77e-26;33!UBERON:0001637;1.02e-20;42!UBERON:0003509;1.02e-20;42!UBERON:0004572;1.02e-20;42!UBERON:0000948;8.34e-18;22!UBERON:0000947;7.53e-17;21!UBERON:0010191;7.53e-17;21!UBERON:0001135;4.39e-15;15!UBERON:0007100;5.38e-15;25!UBERON:0004237;9.64e-15;10!UBERON:0004695;9.64e-15;10!UBERON:0002111;9.64e-15;10!UBERON:0004178;9.64e-15;10!UBERON:0007500;3.89e-13;56!UBERON:0001981;3.89e-13;56!UBERON:0004537;3.89e-13;56!UBERON:0002049;6.27e-12;75!UBERON:0007798;6.27e-12;75!UBERON:0002385;8.14e-11;31!UBERON:0001015;8.14e-11;31!UBERON:0000383;8.14e-11;31!UBERON:0000992;1.51e-10;13!UBERON:0000055;1.03e-09;65!UBERON:0004535;1.08e-09;109!UBERON:0007625;6.69e-09;11!UBERON:0003914;2.47e-08;74!UBERON:0001009;2.64e-08;112!UBERON:0003834;3.19e-08;5!UBERON:0001533;3.19e-08;5!UBERON:0002118;5.73e-08;5!UBERON:0000488;8.02e-08;4!UBERON:0006876;8.66e-08;11!UBERON:0003513;1.45e-07;7!UBERON:0002119;3.00e-07;4!UBERON:0000991;7.87e-07;21 | |||
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| ||
|short_description=p3@LRRC17 | |||
}} | }} |
Latest revision as of 19:14, 24 September 2015
Short description: | p3@LRRC17 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_LRRC17_5end |
Coexpression cluster: | C4637_Smooth_leiomyoma_mesenchymal_Iris_glioblastoma_Lens_Ciliary |
Association with transcript: | 38bp_to_NM_001031692, NM_005824, uc003vat.2, uc003vau.2_5end |
EntrezGene: | LRRC17 |
HGNC: | 16895 |
UniProt: | Q8N6Y2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell | 7.66e-37 | 43 |
smooth muscle myoblast | 7.66e-37 | 43 |
muscle precursor cell | 5.90e-35 | 58 |
myoblast | 5.90e-35 | 58 |
multi-potent skeletal muscle stem cell | 5.90e-35 | 58 |
muscle cell | 3.41e-33 | 55 |
vascular associated smooth muscle cell | 4.85e-32 | 32 |
electrically responsive cell | 1.38e-28 | 61 |
electrically active cell | 1.38e-28 | 61 |
cardiocyte | 9.84e-19 | 16 |
mesodermal cell | 5.91e-15 | 121 |
aortic smooth muscle cell | 9.19e-15 | 10 |
multi fate stem cell | 9.75e-09 | 427 |
cardiac fibroblast | 1.15e-08 | 6 |
somatic stem cell | 2.75e-08 | 433 |
smooth muscle cell of the subclavian artery | 3.09e-08 | 5 |
stem cell | 1.03e-07 | 441 |
cardiac mesenchymal cell | 9.86e-07 | 4 |
migratory trunk neural crest cell | 9.86e-07 | 4 |
Ontology term | p-value | n |
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