FFCP PHASE1:Hg19::chr11:417408..417449,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=59307 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30575 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=5bp_to_ENST00000527295_5end | |||
|cluster_id=chr11:417408..417449,- | |||
|description=CAGE_peak_4_at_SIGIRR_5end | |||
|id=chr11:417408..417449,- | |||
|ontology_enrichment_celltype=CL:0002087!3.38e-15!119;CL:0000791!2.84e-14!18;CL:0000789!2.84e-14!18;CL:0002420!2.84e-14!18;CL:0002419!2.84e-14!18;CL:0000790!2.84e-14!18;CL:0002031!4.94e-14!124;CL:0000738!3.93e-13!140;CL:0000037!7.80e-11!172;CL:0000566!7.80e-11!172;CL:0002032!4.82e-10!165;CL:0000837!4.82e-10!165;CL:0000988!6.14e-10!182;CL:0002057!5.07e-09!42;CL:0000625!5.21e-09!11;CL:0000084!4.00e-08!25;CL:0000827!4.00e-08!25;CL:0000838!7.15e-08!52;CL:0000542!7.42e-08!53;CL:0000051!7.42e-08!53;CL:0000557!1.28e-07!71;CL:0000860!1.45e-07!45;CL:0000839!2.15e-07!70;CL:0002194!6.78e-07!63;CL:0000576!6.78e-07!63;CL:0000040!6.78e-07!63;CL:0000559!6.78e-07!63 | |||
|ontology_enrichment_celltype_v019=CL:0000791;8.62e-21;18!CL:0000789;8.62e-21;18!CL:0002419;8.62e-21;18!CL:0000084;5.69e-13;25!CL:0000625;8.86e-13;11!CL:1000507;3.33e-09;10!CL:1000494;3.33e-09;10!CL:0000542;1.03e-08;53!CL:0000624;1.61e-08;6!CL:1000449;6.95e-08;15!CL:0000236;8.50e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,7.64e-21,18;CL:0000789,7.64e-21,18;CL:0002420,7.64e-21,18;CL:0002419,7.64e-21,18;CL:0000790,7.64e-21,18;CL:0000838,1.59e-14,52;CL:0002087,1.67e-14,115;CL:0000542,4.87e-14,53;CL:0000051,4.87e-14,53;CL:0002031,2.36e-13,120;CL:0000738,4.81e-13,136;CL:0000084,5.24e-13,25;CL:0000827,5.24e-13,25;CL:0000625,7.41e-13,11;CL:0000037,5.89e-10,168;CL:0000988,1.76e-09,177;CL:0002032,2.65e-09,161;CL:0000837,2.65e-09,161;CL:1000507,3.07e-09,10;CL:1000494,3.07e-09,10;CL:0000624,1.67e-08,6;CL:1000449,5.69e-08,15 | |||
|ontology_enrichment_development_v019=CL:0000790;8.62e-21;18!CL:0000051;1.03e-08;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!8.84e-09!102;UBERON:0003061!8.84e-09!102;UBERON:0002193!2.03e-08!112;UBERON:0000058!5.21e-07!26 | |||
|ontology_enrichment_uberon_v019=UBERON:0004211;3.33e-09;10!UBERON:0009773;3.33e-09;10!UBERON:0001231;3.33e-09;10!UBERON:0004810;3.33e-09;10!UBERON:0006555;6.95e-08;15!UBERON:0004819;6.95e-08;15!UBERON:0001285;6.95e-08;15!UBERON:0007684;6.95e-08;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004810,3.07e-09,10;UBERON:0006555,1.30e-08,16;UBERON:0004819,1.30e-08,16;UBERON:0004211,5.69e-08,15;UBERON:0009773,5.69e-08,15;UBERON:0001231,5.69e-08,15;UBERON:0001285,5.69e-08,15;UBERON:0007684,5.69e-08,15;UBERON:0004208,5.69e-08,15 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,3.19454117451962,11.8626198555313,0,0.263766978228454,0,0,0.672325146451775,0,0,0,0,0,0,0,0,0,0.0764134057479513,0.164201178899891,0,1.18009283054671,0,1.70297735647684,0,0.6024118375565,1.47901604066715,0,0,0.587200878669695,2.21598163412751,2.60707781711184,3.68918480216948,0.223915474239924,0.971680998056939,1.03030227053675,1.01778767145695,1.13362783106643,1.4555043671269,1.62700325833979,0.822335776043652,0,0.863077176966451,2.0492856522328,0.945928919554341,0.689491361473237,2.5819387343353,2.70852973188684,1.88242339542605,1.36453075028923,0.674170453335254,1.22433556948361,0.641858054152187,1.91801137739712,0.989553900560148,0.797854630486527,0.426224750532694,1.16083695451434,0.56738522469114,1.24564449799115,1.7587406567972,0,1.08594422352558,1.21079900526674,1.10483290796269,1.89877432464531,0.633765858935825,0,0.209658645508376,0.22465726229299,0.750884464207532,1.12507910687956,0.855038231223746,0.79566670879636,0.730656615058536,0,5.46138611262132,3.55803701545422,2.56038133539904,3.60356388332411,3.4485146397269,3.30522436392431,4.77026877267682,1.70763890732835,4.69789751496751,5.3518251937532,1.32171328579026,2.24203425192614,1.05353633910031,11.0157471263747,11.7903228824749,12.130488440971,2.67498392625085,7.49621213257258,4.73447805734733,9.74133642039557,3.00808233589969,6.18672405697158,4.2091439970888,2.97884250141517,4.99556146930133,2.47112760363769,2.13769275984779,3.03985019564433,3.18783394308558,5.48660283699624,5.35081656179426,7.31748666634838,3.05935225283429,7.2811893784365,5.49803912772208,5.81945291644857,4.45991580053735,8.46408490013344,6.65316431113862,5.57127940587759,3.83959833463255,6.24653632761729,7.34009481336452,2.46338399076314,6.8546292696409,9.62784704820626,11.1514790989755,0,0,0,0,0,0,0,0,0,0.221729397462564,0.087834785693126,2.68507104770311,0.364295288292542,0.741568885568859,0.97364218096405,0.696518949197069,0.664789802594326,0.476981248610684,0,0.371457501329565,0.39752481473341,0,0,0,0.419499436209906,0.550236083880135,0.626984899610432,0.775250277507987,0,0,0,0,0.488124115096339,0.367663080345869,0.81014194788176,0.267899184852239,0.22452937262617,0.337834441449967,0,0.949265659568129,0.549605231791222,0,0,1.3082821564276,0,0,0,0,1.06400514659507,0.560677600142307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122834317311768,0,0,0,0,1.43723628363248,0.168336113954066,0.125118519871964,0.277064115484183,0,0,0,0.226864366320042,0,0,0,0.300091096084402,0,0,0,0,0,0,0,0.161646056818812,0,0,0.169560592310488,0.193260853163297,0.272746120590835,0.573609190778008,0.975789649036763,0.795178609928912,0.348581828608555,0.621966330092223,0.756962552626885,1.45990943630332,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982827216677626,0,0,0.983907508344908,0,0.109750285408626,1.1240175325762,0.502644862058154,0.185176890317059,0,0,0,0,0,0,0,0.190254152234598,3.95102198979638,0.858486162094873,0.738651018262192,0,0.148631162288728,0,0,0.425325291727159,0.0895585227028483,0,0,0,1.05658120815871,2.07328115540772,2.73827911492227,2.65109110195398,0.063497894292169,0,0,0,0.102827492703324,0,0.285826432630578,0,0,0,0,0,0,0.26593811658487,0,0,0,0,0,0,0,0.325736184293735,0,0,0,0,0.299918973546171,2.43247561282381,0.502257091432126,4.21667878966063,0,0,0,0,0,0,7.17344921558575,7.48716888767323,8.62510299438069,9.75407075726088,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117141414992713,0,0,0,0,0,0,0.195801157462741,0,4.9624326269493,4.09856981555372,6.61710858381355,0.303127571446259,0,0,0,0,0,0,0,0.160853921143607,0,0,0,0,0,0,1.20859449591622,1.00253235151642,1.10497186723076,0,0,0,4.96319574198153,2.23344477602803,4.70609861506113,5.84556898613043,1.47772280450026,0,0.170093705276516,0.215915916102139,1.54227252690289,1.35473218771926,3.01013864312912,3.82314409567557,8.31076008928724,2.23874754722178,0,0.261435451024901,0.512900250232778,0,0,2.57602529119306,0,0,0,0,0,0,0,0.15350367472613,0,0,0.145016693914229,0.0852266274161009,0,0.661139661443912,0.768760269460425,0.765676274967505,3.2370489873776,0,0,0,0,0,0,0.18532421910392,0,0,0.316379424718726,0,0,0,0,0,0,0,0.117812402345686,0,0,0.421258456238981,0,0,0,0,0,0,0,0,0,0,0,0.405820753925408,0,0.281695602532241,0.286822704408103,0,0,0,0,0,0,0.349934720244983,1.15466535270614,4.02181365321472,3.26672954583968,1.88287601553558,1.29151611801369,3.36942951335251,0.886860307073351,0.459446800413919,3.04468565539302,0.764637207142375,1.70894156152249,4.52640373369799,5.75907182320672,3.24236655596359,4.32025149790492,6.34500141035416,0,0,0.735120647943095,0.185803175125719,0,0,0,0.399158742865633,0.383010740264733,0,3.24621940274555,0,0,0.156679895773023,0,0.169291777801603,0,0.201799707191048,1.70338495076131,0,0,0,0,0,0,0,0.270455678475983,0,1.4098700508785,8.04704323755345,0.146508179271894,0,0,0,0,0.296964680832639,0.614321404198464,0,0,0.111308705022906,0,0.422250816255987,0.796991953004279,3.03912307084262,5.54252045279407,0,0,0.311039587661807,6.56038963375486,1.07412704805365,0,0.394573622547734,0,0,0,0,0,3.38556089410803,4.19807999981739,0,3.64139034513599,5.08507300585533,2.12748913591143,0.344743373241465,0,0,0,0,0,0,0,0,0,1.11538995422883,0.692552326534174,0,2.99733075704478,2.78248697670294,3.47671590150426,0,0.274792780205587,0,0,0.784901281975124,1.32969345520125,0,0,0,0,1.27149263184303,0,4.40728582029699,1.27217764290547,0,5.97157158647103,4.24596309616028,3.05515072466813,0,0,0,0.134802265961354,0,0,0,1.76098157038881,0,4.3404284313433,2.41981432097328,0.30607276163049,0.379119477770928,0.150323419414493,0.207376382794494,0,0,0,0,1.13843818411917,0,2.60339607502696,0.391969589657511,0.435296032902013,2.62090002363045,0,0,0,0,0.969890164884194,0,0,0,0,0,0.977756913674015,1.20238230377301,4.26905989478705,0,1.58499458869517,0,0,0.432164393964449,0.124252535565433,3.06402245001834,0,0,0,0,0,0.273810757783986,1.27746588066972,0,0,0,0.229160424011684,0,0.599037001496973,0,0.223171457441873,0,0,0,0,0,0,0.196854963029498,0,0,0.136203406111576,1.76828463311521,1.51293380256957,0,0.2249738915515,0,0.0607495566580247,0,2.60058834087354,2.93745693555989,0,0.179287339332845,3.64638874906946,0,1.32418394073086,0,0,0,0,0,0.328370082997356,0.170388021785422,0.79318464064088,0.58620893471233,0,0,0.13223260174269,0,1.40963004463334,1.17466153824464,0.157204305099666,4.97086866416635,2.97699613087171,0,0,1.91502377331055,0,0.2506898940227,0,0,2.19875734750328,0,0,0,0,0.221858103073705,0,0,0,0,0,0.470531639396343,0.468334905806882,1.30428925749743,0,0,0,0,0,0,0.228840068396924,0,0,0,0.159296767163702,0,0,0.414706207840855,0,0,0,0.380805212168795,0,0.181848659202559,0,0,0,0,0,0,0,0,0.214441591374926,0,0,0.231522474323834,0,0,0,0,0.353378291891762,0.38582807654183,0.675769762612291,0,0,0,0,0,0.132864840313363,0.163565394255844,0,0.245772908753719,7.8185485642692,0.19998739585493,0.106691729694141,0,0,0,2.23807212351111,1.24415452006595,0,0,0,0,0,0,0.247871528518004,0,0,0.315446980005013,1.60114149657094,0,0.3062454773532,0,0,0.319267718114302,0,0,0.138314504928436,0,0,0.294443155503077,0.353909170043221,0.366857197043358,2.31051332300676,0,0,0,0.150420656698515,0,3.12605604493237,2.61906694481422,0.818859587550484,4.28782650029431,0.135075169236789,0,0,0.0634158101939068,0,5.48257766857182,0.496211178389294,0,2.8107734080711,0,0,1.21393120847326,0.91064876540519,0.620916591138472,0,0,0.0679697329768317,0,0.945550727071746,1.33477682270483,1.0989032999072,0,2.5224494698241,0.913158720509496,0,0,0.357382720883282,0,0,0,0,0,0,0,2.15113679410139,0.118332000730565,0.170426809518315,3.81048345171836,3.43660302816075,0,0.955538938977433,2.79638579494481,2.65005630761156,4.14520944939716,0,0.205325613712494,0,0,7.01818390386317,2.78531085225916,0,1.1294608203896,0,7.09525364763366,5.47936522566407,3.71551252856727,3.29222107453066,0,6.12759022464227,0,0.594092800654172,0,0,0.751871343838829,0.386747327841463,0,1.42843150884526,2.47026410200984,2.56772373405338,1.46067277649303,5.04602211744995,0.286679166302903,0,0,0,2.645134202577,0,0,0,0.126166424835079,0,0,1.1218771271618,0.534434810531121,2.57305718697566,0.50141507858475,0.682008283964155,0.267964130156178,0,0.103432995861895,3.41174371041569,0.476128862927481,0.193766729508018,0.682821857254437,0.672791175483681,1.78212043178862,0.606351566874658,0.435433495793923,0.342233301085281,3.50230675675855,3.22749924267044,1.33064142618405,1.79087190944144,0.106727345877715,0,0.179650404213174,0,0.122241444182866,0,0,2.41528552309231,0 | |||
|short_description=p4@SIGIRR | |||
}} |
Latest revision as of 23:14, 17 September 2015
Short description: | p4@SIGIRR |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_SIGIRR_5end |
Coexpression cluster: | NA |
Association with transcript: | 5bp_to_ENST00000527295_5end |
EntrezGene: | SIGIRR |
HGNC: | 30575 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 7.64e-21 | 18 |
alpha-beta T cell | 7.64e-21 | 18 |
immature T cell | 7.64e-21 | 18 |
mature T cell | 7.64e-21 | 18 |
immature alpha-beta T cell | 7.64e-21 | 18 |
lymphoid lineage restricted progenitor cell | 1.59e-14 | 52 |
nongranular leukocyte | 1.67e-14 | 115 |
lymphocyte | 4.87e-14 | 53 |
common lymphoid progenitor | 4.87e-14 | 53 |
hematopoietic lineage restricted progenitor cell | 2.36e-13 | 120 |
leukocyte | 4.81e-13 | 136 |
T cell | 5.24e-13 | 25 |
pro-T cell | 5.24e-13 | 25 |
CD8-positive, alpha-beta T cell | 7.41e-13 | 11 |
hematopoietic stem cell | 5.89e-10 | 168 |
hematopoietic cell | 1.76e-09 | 177 |
hematopoietic oligopotent progenitor cell | 2.65e-09 | 161 |
hematopoietic multipotent progenitor cell | 2.65e-09 | 161 |
kidney tubule cell | 3.07e-09 | 10 |
nephron tubule epithelial cell | 3.07e-09 | 10 |
CD4-positive, alpha-beta T cell | 1.67e-08 | 6 |
epithelial cell of nephron | 5.69e-08 | 15 |
Ontology term | p-value | n |
---|---|---|
nephron tubule epithelium | 3.07e-09 | 10 |
excretory tube | 1.30e-08 | 16 |
kidney epithelium | 1.30e-08 | 16 |
nephron epithelium | 5.69e-08 | 15 |
renal tubule | 5.69e-08 | 15 |
nephron tubule | 5.69e-08 | 15 |
nephron | 5.69e-08 | 15 |
uriniferous tubule | 5.69e-08 | 15 |
nephrogenic mesenchyme | 5.69e-08 | 15 |