FFCP PHASE1:Hg19::chr12:57623907..57623961,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6472 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10852 | |||
|TSSclassifier=strong | |||
|UniProt=G3V3Y8,G3V2W0 | |||
|association_with_transcript=0bp_to_ENST00000553529,ENST00000554310,ENST00000557302_5end | |||
|cluster_id=chr12:57623907..57623961,+ | |||
|coexpression_cluster_id=C2221 | |||
|description=CAGE_peak_2_at_SHMT2_5end | |||
|id=chr12:57623907..57623961,+ | |||
|ontology_enrichment_celltype=CL:0000548!1.20e-35!679;CL:0000004!1.20e-35!679;CL:0000255!1.20e-35!679;CL:0000012!5.46e-34!682;CL:0000144!5.94e-26!625;CL:0002371!7.16e-25!591;CL:0000055!1.98e-23!180;CL:0000003!2.13e-19!722;CL:0000220!6.31e-19!246;CL:0002321!1.39e-18!248;CL:0000063!5.28e-17!578;CL:0000222!8.92e-17!119;CL:0000057!1.73e-13!75;CL:0000066!3.08e-13!254;CL:0000359!6.60e-11!32;CL:0000192!1.56e-10!42;CL:0000514!1.56e-10!42;CL:0000183!2.40e-10!59;CL:0000680!2.53e-10!57;CL:0000056!2.53e-10!57;CL:0000355!2.53e-10!57;CL:0000187!3.78e-10!54;CL:0000393!1.30e-07!60;CL:0000211!1.30e-07!60;CL:0000048!3.02e-07!430;CL:0000723!3.20e-07!436 | |||
|ontology_enrichment_celltype_v019=CL:0000359;4.25e-10;32!CL:0000192;3.33e-08;43 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,5.06e-19,250;CL:0000222,6.89e-17,121;CL:0000057,4.18e-14,76;CL:0000066,6.41e-13,253;CL:0000192,6.92e-11,43;CL:0000514,6.92e-11,43;CL:0000359,7.82e-11,32;CL:0000680,1.13e-10,58;CL:0000056,1.13e-10,58;CL:0000355,1.13e-10,58;CL:0000187,1.70e-10,55;CL:0000393,5.22e-08,61;CL:0000211,5.22e-08,61;CL:0000723,9.77e-08,433;CL:0000048,1.10e-07,427;CL:0000034,7.94e-07,441;CL:0000076,9.65e-07,63 | |||
|ontology_enrichment_development_v019=CL:0000514;3.33e-08;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003914!3.08e-17!118;UBERON:0004872!3.60e-15!84;UBERON:0001981!3.10e-14!60;UBERON:0007500!3.10e-14!60;UBERON:0004537!3.10e-14!60;UBERON:0006965!3.10e-14!60;UBERON:0002049!5.12e-14!79;UBERON:0007798!5.12e-14!79;UBERON:0000055!6.54e-14!69;UBERON:0000490!8.50e-14!138;UBERON:0001637!2.38e-13!42;UBERON:0003509!2.38e-13!42;UBERON:0004572!2.38e-13!42;UBERON:0002100!4.48e-13!216;UBERON:0005256!4.52e-11!143;UBERON:0004573!4.21e-10!33;UBERON:0004571!4.21e-10!33;UBERON:0003104!1.31e-09!238;UBERON:0009142!1.31e-09!238;UBERON:0000486!2.04e-09!82;UBERON:0004535!2.95e-09!110;UBERON:0000926!4.92e-09!448;UBERON:0004120!4.92e-09!448;UBERON:0006603!4.92e-09!448;UBERON:0000914!7.69e-09!83;UBERON:0002329!7.69e-09!83;UBERON:0003077!7.69e-09!83;UBERON:0003059!7.69e-09!83;UBERON:0007282!7.69e-09!83;UBERON:0009618!7.69e-09!83;UBERON:0007285!7.69e-09!83;UBERON:0004290!8.01e-09!70;UBERON:0001009!2.44e-08!113;UBERON:0001134!4.54e-08!61;UBERON:0002036!4.54e-08!61;UBERON:0003082!4.54e-08!61;UBERON:0002385!4.24e-07!63;UBERON:0001015!4.24e-07!63;UBERON:0000383!4.24e-07!63 | |||
|ontology_enrichment_uberon_v019=UBERON:0001637;9.67e-10;42!UBERON:0003509;9.67e-10;42!UBERON:0004572;9.67e-10;42!UBERON:0004573;2.96e-09;33!UBERON:0004571;2.96e-09;33!UBERON:0007500;6.35e-09;56!UBERON:0001981;6.35e-09;56!UBERON:0004537;6.35e-09;56!UBERON:0000055;4.98e-07;65!UBERON:0003914;8.62e-07;74 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003914,9.70e-17,117;UBERON:0000490,2.17e-15,148;UBERON:0004872,1.25e-14,83;UBERON:0007500,6.79e-14,59;UBERON:0001981,6.79e-14,59;UBERON:0004537,6.79e-14,59;UBERON:0006965,6.79e-14,59;UBERON:0000055,1.38e-13,68;UBERON:0002049,1.47e-13,78;UBERON:0007798,1.47e-13,78;UBERON:0001637,1.63e-13,42;UBERON:0003509,1.63e-13,42;UBERON:0004572,1.63e-13,42;UBERON:0002100,3.23e-13,199;UBERON:0004573,3.20e-10,33;UBERON:0004571,3.20e-10,33;UBERON:0005256,4.11e-10,122;UBERON:0000486,8.65e-10,83;UBERON:0007503,1.81e-09,78;UBERON:0002329,2.58e-09,71;UBERON:0003059,2.58e-09,71;UBERON:0007282,2.58e-09,71;UBERON:0004290,2.58e-09,71;UBERON:0009618,2.58e-09,71;UBERON:0004535,2.69e-09,109;UBERON:0003104,4.54e-09,160;UBERON:0009142,4.54e-09,160;UBERON:0007524,4.65e-09,73;UBERON:0003077,8.35e-09,72;UBERON:0007285,8.35e-09,72;UBERON:0001134,1.49e-08,62;UBERON:0002036,1.49e-08,62;UBERON:0003082,1.49e-08,62;UBERON:0001009,2.64e-08,112;UBERON:0002385,1.53e-07,64;UBERON:0001015,1.53e-07,64;UBERON:0000383,1.53e-07,64 | |||
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| |||
|short_description=p2@SHMT2 | |||
}} |
Latest revision as of 13:37, 19 September 2015
Short description: | p2@SHMT2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SHMT2_5end |
Coexpression cluster: | C2221_Mesenchymal_Fibroblast_Keratocytes_Keratinocyte_Osteoblast_mesenchymal_Hepatocyte |
Association with transcript: | 0bp_to_ENST00000553529, ENST00000554310, ENST00000557302_5end |
EntrezGene: | SHMT2 |
HGNC: | 10852 |
UniProt: | G3V3Y8G3V2W0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 5.06e-19 | 250 |
mesodermal cell | 6.89e-17 | 121 |
fibroblast | 4.18e-14 | 76 |
epithelial cell | 6.41e-13 | 253 |
smooth muscle cell | 6.92e-11 | 43 |
smooth muscle myoblast | 6.92e-11 | 43 |
vascular associated smooth muscle cell | 7.82e-11 | 32 |
muscle precursor cell | 1.13e-10 | 58 |
myoblast | 1.13e-10 | 58 |
multi-potent skeletal muscle stem cell | 1.13e-10 | 58 |
muscle cell | 1.70e-10 | 55 |
electrically responsive cell | 5.22e-08 | 61 |
electrically active cell | 5.22e-08 | 61 |
somatic stem cell | 9.77e-08 | 433 |
multi fate stem cell | 1.10e-07 | 427 |
stem cell | 7.94e-07 | 441 |
squamous epithelial cell | 9.65e-07 | 63 |