FFCP PHASE1:Hg19::chr12:75893552..75893568,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC= | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-21bp_to_CU689793_5end | |||
|cluster_id=chr12:75893552..75893568,+ | |||
|coexpression_cluster_id=C3333 | |||
|description=CAGE_peak_1_at_CU689793_5end | |||
|id=chr12:75893552..75893568,+ | |||
|ontology_enrichment_celltype=CL:0002057!4.26e-24!42;CL:0002009!1.96e-21!65;CL:0000860!4.63e-21!45;CL:0002194!2.26e-20!63;CL:0000576!2.26e-20!63;CL:0000040!2.26e-20!63;CL:0000559!2.26e-20!63;CL:0000766!5.51e-19!76;CL:0000557!4.09e-18!71;CL:0000839!1.53e-16!70;CL:0000048!1.45e-14!430;CL:0002087!5.06e-14!119;CL:0000738!1.37e-13!140;CL:0000723!1.96e-13!436;CL:0000034!4.67e-13!444;CL:0002031!2.06e-12!124;CL:0002320!9.67e-12!365;CL:0000134!1.16e-11!358;CL:0000763!1.91e-10!112;CL:0000049!1.91e-10!112;CL:0000219!1.25e-08!390;CL:0000037!1.46e-08!172;CL:0000566!1.46e-08!172;CL:0002032!1.72e-08!165;CL:0000837!1.72e-08!165;CL:0000988!9.66e-08!182;CL:0002371!2.36e-07!591;CL:0000144!5.17e-07!625 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.16e-22;33!CL:0002057;2.16e-22;33!CL:0000473;1.09e-21;39!CL:0000234;1.09e-21;39!CL:0000576;1.26e-12;48!CL:0000766;2.63e-11;69!CL:0000197;1.11e-08;6!CL:0000098;1.11e-08;6!CL:0002167;1.11e-08;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,3.19e-28,48;CL:0000234,3.19e-28,48;CL:0000860,2.76e-25,42;CL:0002057,2.76e-25,42;CL:0002009,1.88e-23,61;CL:0002194,1.20e-22,59;CL:0000576,1.20e-22,59;CL:0000040,1.20e-22,59;CL:0000559,1.20e-22,59;CL:0000766,4.67e-22,72;CL:0000557,1.26e-20,67;CL:0000839,2.03e-19,66;CL:0000763,7.01e-14,108;CL:0000049,7.01e-14,108;CL:0000738,1.48e-12,136;CL:0002031,2.80e-12,120;CL:0002087,3.35e-12,115;CL:0002032,7.52e-10,161;CL:0000837,7.52e-10,161;CL:0000048,1.51e-09,427;CL:0000723,3.53e-09,433;CL:0000037,4.71e-09,168;CL:0000988,9.25e-09,177;CL:0000034,1.05e-08,441;CL:0000197,1.62e-08,6;CL:0000098,1.62e-08,6;CL:0002167,1.62e-08,6;CL:0000134,6.34e-08,354;CL:0002320,1.67e-07,361 | |||
|ontology_enrichment_development_v019=CL:0002057;3.08e-18;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0060084;1.76e-07;3!DOID:127;1.76e-07;3 | |||
|ontology_enrichment_disease_v019_2=DOID:0060084,2.65e-07,3;DOID:127,2.65e-07,3 | |||
|ontology_enrichment_uberon=UBERON:0002371!1.28e-18!80;UBERON:0002204!3.59e-17!167;UBERON:0001474!4.20e-17!86;UBERON:0004765!9.51e-15!101;UBERON:0001434!9.51e-15!101;UBERON:0002390!4.02e-14!102;UBERON:0003061!4.02e-14!102;UBERON:0002384!1.38e-12!375;UBERON:0002193!1.13e-11!112;UBERON:0002405!2.92e-09!115;UBERON:0003081!3.31e-08!216 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,2.16e-21,76;UBERON:0001474,3.53e-19,82;UBERON:0004765,6.96e-18,90;UBERON:0002405,3.76e-17,93;UBERON:0002390,1.07e-15,98;UBERON:0003061,1.07e-15,98;UBERON:0001434,3.33e-15,100;UBERON:0002204,6.42e-15,167;UBERON:0002193,1.60e-14,108;UBERON:0003081,7.86e-11,203;UBERON:0002384,6.18e-08,371;UBERON:0000926,8.54e-08,315;UBERON:0004120,8.54e-08,315;UBERON:0006603,8.54e-08,315 | |||
|phase1_expression=0.181678379270557,0.856402095563933,0.422863212287913,0,0,0.872338524100369,0,0,0,0.245733936501509,0,0,0.263766978228454,0.247532705920093,0,0.672325146451775,1.80808358407193,1.46062018077475,1.95173119516203,0,0,0,0,0.410623275218653,0,0,0.0821005894499457,0.0787107813136792,0,0.383829398097213,0.309632246632152,0,0,0,0.232401601740905,0,0.293600439334847,1.10799081706375,1.80490002723128,1.95309783644267,0.671746422719773,0,0.257575567634187,1.30858414901608,1.13362783106643,2.42584061187816,1.85943229524548,2.46700732813095,0.309706370895104,0.863077176966451,2.56160706529101,0.709446689665756,2.06847408441971,3.87290810150296,5.41705946377367,0.941211697713023,0.272906150057846,0.224723484445085,1.22433556948361,1.28371610830437,1.27867425159808,1.31940520074686,0.598390972864896,0.852449501065388,1.16083695451434,3.40431134814684,2.4912889959823,2.26123798731069,3.65038042894141,0.434377689410233,1.81619850790011,1.84138817993782,2.53169909952708,0.633765858935825,0.637812899895131,0.838634582033504,0.673971786878971,0.750884464207532,0.48217676009124,0.855038231223746,0.99458338599545,0.91332076882317,0,0,0.889509253863555,1.28019066769952,0.400395987036012,0,0,0.954053754535364,1.1384259382189,0,0.764546456250458,0,0.560508562981536,0.263384084775077,0.393419540227666,0.393010762749165,1.23360899399706,0,0,0.473447805734733,0,0.111410456885174,0,0,0.270803863765016,0.640456598628376,0.780356085359269,0.493313713811028,0.552700035571697,0,0.14828656316206,0,1.04535523804977,0,0,0.68725489096526,0.759059076058509,0,1.30216690771284,0,0.150575119077773,0.127986611154418,0,0,0,0,0.802320587350522,0.579297615531196,4.87613732627923,0,0,0.361439152384566,0,1.30361867064741,0,0,0.378139268656271,1.55210578223795,1.05401742831751,0.0654895377488563,0,0,0,0.348259474598534,0.26591592103773,0.238490624305342,0,0,0,0,0,0,0,0.825354125820202,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,0,0,0.496971951695318,1.8994576749687,1.05927344650575,0.573673241497627,0.709336764396714,0,0,0.49333509683432,0,0.134710672069688,0.326923806226917,0,0,0,0.312160076830321,0,1.49448680551801,0,0,0,0.408308342509787,0.245668634623536,0,0,0.741800787835671,0,0,0.168336113954066,0,0,0,0.612975591598039,0.300476117813194,0.226864366320042,0.717558542755448,0.640672166455702,0.635795703478686,2.10063767259082,0.206105058476878,0.257640540045629,0.558350568994769,1.18143432568886,0.584622030967192,0,0.552299391853796,0.161646056818812,2.13005755509969,1.20902517873168,0.169560592310488,0.193260853163297,0.545492241181669,0.286804595389004,0,0,0,0,0.252320850875628,0,0,3.21620469096443,0,0,0.721879481669586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.857839051492628,0,0,0,0,0,0,0,0,1.29149563659404,0,0,0,0,0,0.246217006087397,0.468008530278475,0.594524649154913,0,1.00789276919316,0.141775097242386,0.268675568108545,0,0,0,0,0,0.144119953416961,0,0.063497894292169,0,0,0,0,0,0,0,0,0.36669142910475,0.258543431515556,0,3.381211010224,0,0,0,0,0.266422179016099,0.142977993658148,0,0,0.65147236858747,0,0,3.61727252471503,0.871533458600294,7.59794732983634,3.64871341923571,3.01354254859276,6.32501818449095,0.718874566474748,1.14861935834114,0,2.02693829334611,1.84928690295345,0.179060963239896,0.784596007954691,0.985153801009636,1.07813787429759,0.513372145118994,0,0,0,0,0.637938751653163,2.24702107184155,5.9832291840805,0.414415513436035,0.12269149171914,0.500170521059677,0.542530047399471,1.03985430765404,1.60586089917446,1.26161932027148,1.17141414992713,0,0,0,3.98535359121262,0,0.0868836144680828,0,0,0.206768026122887,0.647142602455851,0.74709290462411,0,0,0,0.496215615637554,0.61384789315225,0.280660094433074,0,0,0.965123526861645,0,0.925258162815933,0.710246901252508,0.574890092096664,0,0.929683027679674,0,0.802025881213139,0.184161977871793,0.34444334449382,0.546273504020151,0.262248829918848,0,0.0770153371044148,0,0,0.105551628892876,0,0,0.863663664408557,0,0,0,0,0,0.447749509444357,0,0,0,0,0,0.103041011647722,0.0915694648183434,0.082509499920588,0,0,0,0.096670718292122,0.462145851343933,0.460511024178389,0.137836572484531,0.429680979473094,0.145016693914229,0.426133137080504,0.0890320356467374,0,0,0.255225424989168,0,0.464845549297286,0.31481234683064,0,0.308033580176089,0.532306030317022,0,0.37064843820784,0.572499546967965,0.372158369359667,0,0.190630193923825,0,0.42793898803392,0,0,0.179872457583315,0.54907405947211,0.589062011728432,0,1.58510321173008,0.421258456238981,0,1.21856744815642,0,0.136499911407986,0.282810863907425,0,0,1.32687795048244,1.75380354101505,0,0,0,1.239293992399,0.281695602532241,0.430234056612155,0.196498082026242,0,0.354761064070598,0,0.329294892959902,0,0,0.192444225451024,0,0,0.188287601553558,0,0,0.443430153536676,0.229723400206959,1.01489521846434,0,0,0,0,0,0,0.79312517629427,0,0,0,0,0,0,0,0,0.191505370132367,0,0,0.280797178113459,0.456469358066384,0,0,0,1.1241165257259,0.201799707191048,0,0.343505344755765,0,0.223676107892416,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0.284136146806413,0,0,0,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| |||
|short_description=p1@CU689793 | |||
}} |
Latest revision as of 12:24, 24 July 2015
Short description: | p1@CU689793 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CU689793_5end |
Coexpression cluster: | C3333_Neutrophils_Monocytederived_Mesothelial_mesenchymal_Mallassezderived_Fibroblast_leiomyoma |
Association with transcript: | -21bp_to_CU689793_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 3.19e-28 | 48 |
phagocyte | 3.19e-28 | 48 |
classical monocyte | 2.76e-25 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.76e-25 | 42 |
macrophage dendritic cell progenitor | 1.88e-23 | 61 |
monopoietic cell | 1.20e-22 | 59 |
monocyte | 1.20e-22 | 59 |
monoblast | 1.20e-22 | 59 |
promonocyte | 1.20e-22 | 59 |
myeloid leukocyte | 4.67e-22 | 72 |
granulocyte monocyte progenitor cell | 1.26e-20 | 67 |
myeloid lineage restricted progenitor cell | 2.03e-19 | 66 |
myeloid cell | 7.01e-14 | 108 |
common myeloid progenitor | 7.01e-14 | 108 |
leukocyte | 1.48e-12 | 136 |
hematopoietic lineage restricted progenitor cell | 2.80e-12 | 120 |
nongranular leukocyte | 3.35e-12 | 115 |
hematopoietic oligopotent progenitor cell | 7.52e-10 | 161 |
hematopoietic multipotent progenitor cell | 7.52e-10 | 161 |
multi fate stem cell | 1.51e-09 | 427 |
somatic stem cell | 3.53e-09 | 433 |
hematopoietic stem cell | 4.71e-09 | 168 |
hematopoietic cell | 9.25e-09 | 177 |
stem cell | 1.05e-08 | 441 |
receptor cell | 1.62e-08 | 6 |
sensory epithelial cell | 1.62e-08 | 6 |
olfactory epithelial cell | 1.62e-08 | 6 |
mesenchymal cell | 6.34e-08 | 354 |
connective tissue cell | 1.67e-07 | 361 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 2.16e-21 | 76 |
bone element | 3.53e-19 | 82 |
skeletal element | 6.96e-18 | 90 |
immune system | 3.76e-17 | 93 |
hematopoietic system | 1.07e-15 | 98 |
blood island | 1.07e-15 | 98 |
skeletal system | 3.33e-15 | 100 |
musculoskeletal system | 6.42e-15 | 167 |
hemolymphoid system | 1.60e-14 | 108 |
lateral plate mesoderm | 7.86e-11 | 203 |
connective tissue | 6.18e-08 | 371 |
mesoderm | 8.54e-08 | 315 |
mesoderm-derived structure | 8.54e-08 | 315 |
presumptive mesoderm | 8.54e-08 | 315 |
Ontology term | p-value | n |
---|---|---|
cell type benign neoplasm | 2.65e-07 | 3 |
leiomyoma | 2.65e-07 | 3 |