FFCP PHASE1:Hg19::chr18:28622907..28622942,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1825 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3037 | |||
|TSSclassifier=strong | |||
|UniProt=Q14574 | |||
|association_with_transcript=-126bp_to_ENST00000360428,ENST00000434452,NM_001941,NM_024423,uc002kwi.3,uc002kwj.3_5end | |||
|cluster_id=chr18:28622907..28622942,- | |||
|coexpression_cluster_id=C68 | |||
|description=CAGE_peak_4_at_DSC3_5end | |||
|id=chr18:28622907..28622942,- | |||
|ontology_enrichment_celltype=CL:0000066!7.14e-14!254;CL:0002076!1.09e-07!43 | |||
|ontology_enrichment_celltype_v019=CL:0000349;4.67e-17;19!CL:0002577;4.53e-07;3!CL:0002594;6.79e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,2.80e-17,19;CL:0000066,2.14e-14,253;CL:0002577,4.65e-07,3;CL:0000076,5.03e-07,63;CL:0002076,7.85e-07,42;CL:0002594,8.04e-07,4 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:1749!7.41e-07!14 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000478!2.28e-13!24;UBERON:0005631!8.83e-11!14;UBERON:0000158!8.83e-11!14;UBERON:0000481!1.74e-09!347;UBERON:0004119!5.50e-09!169;UBERON:0000925!5.50e-09!169;UBERON:0006595!5.50e-09!169;UBERON:0000922!1.19e-08!612;UBERON:0003124!3.45e-08!7;UBERON:0007625!7.07e-08!11;UBERON:0002050!1.06e-07!605;UBERON:0005423!1.06e-07!605;UBERON:0000020!1.21e-07!23;UBERON:0000923!1.79e-07!604;UBERON:0005291!1.79e-07!604;UBERON:0006598!1.79e-07!604;UBERON:0002532!1.79e-07!604;UBERON:0001444!2.27e-07!48;UBERON:0001032!4.15e-07!24;UBERON:0004456!4.15e-07!24;UBERON:0000468!6.97e-07!659 | |||
|ontology_enrichment_uberon_v019=UBERON:0000478;8.89e-17;24!UBERON:0005631;4.86e-12;10!UBERON:0000158;4.86e-12;10!UBERON:0010371;1.77e-11;31!UBERON:0007625;5.65e-09;11!UBERON:0001987;1.96e-08;4!UBERON:0000020;8.27e-08;23!UBERON:0000305;1.44e-07;7!UBERON:0001032;2.27e-07;24!UBERON:0004456;2.27e-07;24!UBERON:0001310;6.79e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,1.01e-18,14;UBERON:0000158,1.01e-18,14;UBERON:0000478,4.89e-17,24;UBERON:0003124,2.96e-13,7;UBERON:0000033,1.28e-09,56;UBERON:0007625,3.84e-09,11;UBERON:0004119,9.53e-09,160;UBERON:0000925,9.53e-09,160;UBERON:0006595,9.53e-09,160;UBERON:0001987,1.67e-08,4;UBERON:0004340,1.67e-08,4;UBERON:0000153,4.01e-08,62;UBERON:0007811,4.01e-08,62;UBERON:0008814,9.34e-08,18;UBERON:0000305,1.45e-07,7;UBERON:0000076,1.69e-07,8;UBERON:0000020,2.11e-07,24;UBERON:0001032,2.11e-07,24;UBERON:0004456,2.11e-07,24;UBERON:0001444,2.68e-07,49;UBERON:0003100,6.07e-07,41;UBERON:0001310,8.04e-07,4;UBERON:0004923,8.23e-07,66 | |||
|phase1_expression=0.181678379270557,0,0,0,0,0,0,0,0,0,0,27.5236128884017,17.9361545195348,0.247532705920093,0,0,0,0,0,0,0,0,0,0.136874425072884,0.125542639594803,0,0,0,0,0,2.47705797305722,0,1.204823675113,1.47901604066715,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,1.66221330396589,0,0,0,0,0,0.850813354476611,2.66075276955077,1.84453049955565,0,0.364295288292542,1.11235332835329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.66944122552934,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354668382198357,4.48542080113846,1.06748995729705,0.24666754841716,2.48968828319813,0.538842688278752,0.980771418680752,0.151357427644931,0,0.234321431833797,0,0,0,0.117434498643765,0,0.140450806702248,0,0,0,0,0,0,0,0,0,0,0,0,0,3.17610112848059,0,0,0,0,0,0,0,0,0.0974370051611986,0,0,0,0,0,0,1.93260853163297,2.45471508531751,4.01526433544605,0.243947412259191,0,0.464775771478074,0.207322110030741,0,0,0,0.643240938192885,0,0,0,0,0,0,0,0,0,0,0,0,2.95262181849859,1.40241773803446,1.6462960453256,2.94017422771084,0,0,0,0,0.245976877086227,1.20097467208968,2.63400684980701,2.24803506515239,1.00528972411631,3.61094936118265,0,0,1.44331342025273,0,9.39269553886573,0,0,0,0,0,0,0,0,1.87467667973554,7.0552493843521,2.55195175036296,2.68675568108545,1.45316969256981,3.06706143332169,0,0,0,0.144119953416961,0.12624243342638,0,0,0,0,0,0,0,0,0,0.07333828582095,4.52451005152222,0,0,0,0,0,0,0,0.285955987316295,1.62786481617433,1.64648067356154,0,0,0.791951872933429,3.61727252471503,0.871533458600294,2.0994328148232,0,0,0,0,0,0,0,0,0,0,0,0,0,0.508189248444927,1.30139853857622,0,0,0,0,0,0,0.12269149171914,0,0.271265023699736,0,0,0,0,0,0,0,0,0,0,0.195801157462741,0,0,0,0,13.0344855721892,13.3148351608398,25.7031749330228,0,0,0,0.128139149255701,0,0,0,0,0,0,0,0.116210378459959,0.120859449591622,3.20810352485256,2.20994373446151,0,0,0,0,0.15403067420883,0.784349769176855,0,0.316654886678627,1.13733384070897,0.340187410553031,0.647747748306418,0,0.270946437543853,0,0,0,0.223874754722178,0,0,0.512900250232778,3.93617574839647,6.50756789328606,0.309123034943167,0,0,1.14853107599234,0,0,0.290012154876366,0,0,0.275673144969061,0.537101224341368,0,0.170453254832202,0.0890320356467374,0.826424576804891,1.15314040419064,1.14851441245126,1.4162089319777,0,0.31481234683064,0,0,0,0,0,0,0,5.69482964493707,2.2875623270859,1.27948895655667,1.28381696410176,0,0,1.07923474549989,0.54907405947211,0.942499218765491,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.02910376962704,2.478587984798,1.40847801266121,5.73645408816206,16.211091767165,2.49669736036875,0,0,0,0,0,1.25088746543166,0,1.08890984861323,0.282431402330337,0.86101074534246,0,2.21715076768338,5.97280840538095,0,0,0,0,0,0,0,0,0,0,0.490080431962063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.166849141711909,0,0,0,0,0,0,0,0,0,0,0,102.898872921944,53.1566778690423,145.901333497135,0,0,2.22617410045812,0,0.211125408127993,1.59398390600856,0.276283915531148,0,0.102268682502155,0,0,0.0898683511473268,0,0,0.295930216910801,0,0,0,0,0,0,0,0.724999575434793,1.4793148277115,0,0,0.689486746482929,0,0.520874984799877,0,0,0,0,0,0.658156191461918,0,2.09135616417905,0.461701551022782,0,0,0.0897576444097721,0,28.7101043758728,1.55715908783166,9.06159119231679,0,0,0,0,0,0,0,0,0,0,0,0,0,0.353830258013357,0,0.296521128680622,0.370691816839509,0.208843899010911,0,0.802577647298789,0,0,0.19566461893209,0,0,1.20990716048664,0,1.01098527405581,2.85614496887536,3.83646308169814,0,0.330991955875499,0.313932918407225,0,0,0,0.867798691675654,1.17590876897253,2.61177619741208,0.34945333648406,3.43972064943233,0,0,0,0.969890164884194,0,0.451961481561065,0,0,0,0,0,0,0,0,4.35239065430479,4.28987494654911,0,0,0.942776138467182,0,0,0,0,0,0,0,0.859530882839914,0,0,0.687481272035051,0,0.998395002494955,0,0,0.671834724867263,0,0,0.0787831823072236,0.0824158583811665,0,1.87012214878023,0,0,0,0.321506296930038,0.412618309791701,0.415440338029185,0,0.77380195455795,0,0,0,0.0524545881349981,13.7280437475228,0.179287339332845,6.71703190618059,0,0,0,0,0,0,4.7892076624995,0,0,0,0,0,0,0,0.684347351537318,0,0,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.332787154610557,0,0.968440444553616,0,0,0,0,0,0,0,0,0,0.189403005275089,0,0,0,0.151230923763239,0,0.147855149989634,0.63718706865481,0,2.17368139626763,2.07353103920428,1.06336685823198,0.521745061811734,5.40927392389986,4.18885733385675,2.03435366602331,0,3.00749559718968,0,1.59238355479446,0,0,0,0,0,5.57548137574807,2.87093721161733,0.680117776536817,1.15761237161917,0,0.179088841081487,0,5.04353314031026,2.47364804324233,2.50788249752189,0,0,6.56317649289277,0,0,0,0,0,0,0,0,0,0,0,0,0,2.09819261579167,3.11038630016486,0,0,0,0,0.848662649770126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161475645631851,0,1.07962490351128,0.943757786781923,0.183428598521679,2.07946199070609,0,0,0,0.225630985047772,0,0,0,8.84368354554522,0,0,0,0,0,0,0,0.496211178389294,0,0.255524855279191,0,0,0,0.22766219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| |||
|short_description=p4@DSC3 | |||
}} |
Latest revision as of 04:32, 19 September 2015
Short description: | p4@DSC3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_DSC3_5end |
Coexpression cluster: | C68_amniotic_chorionic_Placental_salivary_placenta_tongue_mesothelioma |
Association with transcript: | -126bp_to_ENST00000360428, ENST00000434452, NM_001941, NM_024423, uc002kwi.3, uc002kwj.3_5end |
EntrezGene: | DSC3 |
HGNC: | 3037 |
UniProt: | Q14574 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 2.80e-17 | 19 |
epithelial cell | 2.14e-14 | 253 |
placental epithelial cell | 4.65e-07 | 3 |
squamous epithelial cell | 5.03e-07 | 63 |
endo-epithelial cell | 7.85e-07 | 42 |
smooth muscle cell of the umbilical artery | 8.04e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 1.01e-18 | 14 |
membranous layer | 1.01e-18 | 14 |
extraembryonic structure | 4.89e-17 | 24 |
chorion | 2.96e-13 | 7 |
head | 1.28e-09 | 56 |
pigment epithelium of eye | 3.84e-09 | 11 |
endoderm-derived structure | 9.53e-09 | 160 |
endoderm | 9.53e-09 | 160 |
presumptive endoderm | 9.53e-09 | 160 |
placenta | 1.67e-08 | 4 |
allantois | 1.67e-08 | 4 |
anterior region of body | 4.01e-08 | 62 |
craniocervical region | 4.01e-08 | 62 |
pharyngeal arch system | 9.34e-08 | 18 |
amnion | 1.45e-07 | 7 |
external ectoderm | 1.69e-07 | 8 |
sense organ | 2.11e-07 | 24 |
sensory system | 2.11e-07 | 24 |
entire sense organ system | 2.11e-07 | 24 |
subdivision of head | 2.68e-07 | 49 |
female organism | 6.07e-07 | 41 |
umbilical artery | 8.04e-07 | 4 |
organ component layer | 8.23e-07 | 66 |