FFCP PHASE1:Hg19::chr18:57364588..57364668,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=147372 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29426 | |||
|TSSclassifier=strong | |||
|UniProt=Q6UXH8 | |||
|association_with_transcript=0bp_to_NM_133459,uc002lib.2_5end | |||
|cluster_id=chr18:57364588..57364668,- | |||
|coexpression_cluster_id=C3733 | |||
|description=CAGE_peak_1_at_CCBE1_5end | |||
|id=chr18:57364588..57364668,- | |||
|ontology_enrichment_celltype=CL:0000055!9.12e-33!180;CL:0000057!4.34e-23!75;CL:0000680!5.99e-13!57;CL:0000056!5.99e-13!57;CL:0000355!5.99e-13!57;CL:0002620!3.13e-12!23;CL:0000393!6.20e-12!60;CL:0000211!6.20e-12!60;CL:0000187!1.44e-11!54;CL:0000183!2.61e-11!59;CL:0000222!5.14e-10!119;CL:0002321!7.58e-10!248;CL:0000220!8.14e-10!246;CL:0000192!1.96e-08!42;CL:0000514!1.96e-08!42 | |||
|ontology_enrichment_celltype_v019=CL:0002620;5.45e-13;23!CL:0000057;5.24e-10;73!CL:0000187;6.33e-07;55 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,9.98e-25,76;CL:0002620,5.58e-13,23;CL:0000680,4.49e-12,58;CL:0000056,4.49e-12,58;CL:0000355,4.49e-12,58;CL:0000393,4.09e-11,61;CL:0000211,4.09e-11,61;CL:0000187,1.14e-10,55;CL:0000222,1.65e-08,121;CL:0002321,2.16e-08,250;CL:0000192,9.16e-08,43;CL:0000514,9.16e-08,43 | |||
|ontology_enrichment_development_v019=CL:0000355;3.75e-07;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!3.78e-24!365;UBERON:0000914!1.11e-21!83;UBERON:0002329!1.11e-21!83;UBERON:0003077!1.11e-21!83;UBERON:0003059!1.11e-21!83;UBERON:0007282!1.11e-21!83;UBERON:0009618!1.11e-21!83;UBERON:0007285!1.11e-21!83;UBERON:0003102!1.74e-19!95;UBERON:0000486!2.26e-19!82;UBERON:0005256!9.88e-19!143;UBERON:0000481!2.12e-17!347;UBERON:0004290!2.61e-17!70;UBERON:0002100!3.12e-17!216;UBERON:0000119!8.08e-14!312;UBERON:0000483!2.13e-13!309;UBERON:0000468!4.46e-13!659;UBERON:0002385!5.60e-13!63;UBERON:0001015!5.60e-13!63;UBERON:0000383!5.60e-13!63;UBERON:0001134!6.50e-13!61;UBERON:0002036!6.50e-13!61;UBERON:0003082!6.50e-13!61;UBERON:0002199!3.19e-12!45;UBERON:0002416!3.19e-12!45;UBERON:0003104!4.15e-12!238;UBERON:0009142!4.15e-12!238;UBERON:0002097!8.75e-12!40;UBERON:0000467!1.72e-11!625;UBERON:0000480!2.87e-11!626;UBERON:0000490!4.96e-09!138;UBERON:0000922!2.55e-07!612;UBERON:0002050!6.87e-07!605;UBERON:0005423!6.87e-07!605 | |||
|ontology_enrichment_uberon_v019=UBERON:0002097;2.00e-10;41!UBERON:0003102;1.33e-09;50!UBERON:0002199;1.45e-09;46!UBERON:0002416;1.45e-09;46!UBERON:0002384;1.54e-07;198!UBERON:0002204;2.17e-07;70!UBERON:0001434;3.89e-07;36!UBERON:0002067;7.88e-07;9!UBERON:0000075;9.86e-07;16 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003102,2.97e-20,99;UBERON:0000486,7.84e-19,83;UBERON:0007524,4.66e-17,73;UBERON:0002329,1.32e-16,71;UBERON:0003059,1.32e-16,71;UBERON:0007282,1.32e-16,71;UBERON:0004290,1.32e-16,71;UBERON:0009618,1.32e-16,71;UBERON:0003077,1.63e-16,72;UBERON:0007285,1.63e-16,72;UBERON:0007503,1.50e-15,78;UBERON:0002199,5.75e-14,46;UBERON:0002416,5.75e-14,46;UBERON:0005256,6.21e-14,122;UBERON:0003104,1.49e-13,160;UBERON:0009142,1.49e-13,160;UBERON:0002097,1.60e-13,41;UBERON:0002385,3.47e-12,64;UBERON:0001015,3.47e-12,64;UBERON:0000383,3.47e-12,64;UBERON:0002100,3.62e-12,199;UBERON:0001134,4.27e-12,62;UBERON:0002036,4.27e-12,62;UBERON:0003082,4.27e-12,62;UBERON:0000490,5.04e-12,148;UBERON:0000119,3.25e-10,309;UBERON:0000483,7.72e-10,306;UBERON:0002067,8.04e-07,9;UBERON:0004016,8.04e-07,9;UBERON:0010083,8.04e-07,9;UBERON:0000075,8.93e-07,16 | |||
|phase1_expression=3.63356758541113,13.7024335290229,5.77913056793482,20.0146596706261,8.49226079411847,3.48935409640147,2.53299878168311,5.05375898741465,7.31319758959548,8.60068777755281,8.37361401566913,0.218441372130172,0.263766978228454,14.9757287081656,17.8954582893075,0.672325146451775,3.01347264011988,0.730310090387373,0.975865597581014,1.10808952269109,11.4240387096782,2.19418305034661,0.286235987131057,0.273748850145768,1.88313959392204,0,0,0,0,0,0,16.5495820406207,38.554357603616,15.1599144168383,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.426224750532694,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,19.5045493051169,6.70700859703636,5.37022759742827,38.6739893051486,23.5628817998868,26.0723734129483,1.5905718941022,6.32625331393427,0.378139268656271,1.10864698731282,0.175669571386252,3.79839318943367,3.64295288292542,4.44941331341315,0,0,0,0,0,0,2.18638648103376,3.4409383804245,0.694281003215189,1.69592382577203,31.4624577157429,5.50236083880135,4.38889429727302,0.775250277507987,3.20189636418039,1.33888245105868,1.61131726843659,0,0,8.82391392830085,7.29127753093584,0.0892997282840798,0.22452937262617,0,0,0,0,0,0,7.41359888642308,5.4666914686485,8.737505304856,11.1223711883104,25.2416226258956,10.9947198481491,3.36406560085384,0,2.96001058100592,7.46906484959439,7.13966561969347,5.5577047058576,0.454072282934794,0,26.7126432290528,19.9782449171405,14.2617955386112,19.1294311106305,39.9277295388801,36.5832854271977,36.9385621626914,36.7477508258808,38.4471413185834,35.0274398185845,66.528160007795,51.9260551484969,58.2503271640337,29.4633438144658,31.4788533094104,31.404748487863,48.2091560942478,66.7245983738874,55.1678032438235,59.9449855037321,9.52830338544177,34.0840307808838,13.0270007179326,13.3517097730524,23.4071054945834,11.5418832747052,20.6112432036503,14.1448810812008,43.2067410537642,13.6411807225678,21.961738359238,13.8074847963449,13.9015608864178,34.080920881595,17.0271046004712,16.7864986387383,4.05847791642923,4.09119180886252,4.58887352622406,1.95157929807353,1.85541675650079,2.67246068599892,2.28054321033815,2.27088765788066,0.36497735907583,32.8544017892614,32.1620469096443,29.0083334840209,33.8988587463345,33.9283356384705,0,0,0,0,0,0,0,0,0,0,12.6217596423101,18.1092564985816,20.5812195939759,0,0,11.8157981336281,5.73902029239046,0,4.28919525746314,1.20725313949488,6.74410519545717,10.6560710756329,1.29623823221941,34.5356803628944,42.6373261964627,5.77325368101093,0,2.46558257895225,0.721832238805369,0,0.190254152234598,0,0,0,0,0,3.74935335947108,2.68771405118175,0.283550194484773,12.3590761329931,10.1721878479887,5.75074018747817,0,0,0.207328115540772,0.288239906833923,0,0.063497894292169,0,0,1.71072446022705,1.54241239054985,0,0,8.63409349459278,3.05172048183296,5.64704800821315,0.387815147273333,3.57656445851882,14.370146793452,0,4.16029747645464,15.1752350814664,32.625300365354,18.649552531127,15.4416233150799,1.08524321078289,13.1718453884923,18.2412263204492,17.4142054883847,10.2953743481346,0.301439377059586,0,0.199945982364114,0,0,0,6.70949595376431,9.18895486672911,44.2174405626227,34.4579509868839,13.7669136108757,44.0489969570143,0,0,0,0,0,7.8083912314573,7.73288812777695,12.0611711040731,9.56908127479745,0,0,0,18.403723757871,20.5069913634468,8.68048075839154,15.5978146148105,25.5153453979941,13.8778125229863,14.0569697991256,4.8151375956435,2.27407504055985,5.17365356462525,3.98535359121262,9.21845842708516,29.9748469914886,2.34961388955289,2.74514739048685,0,0,0,0,0,1.20956117331872,2.23297027036899,1.38115775959256,2.24528075546459,3.20347873139252,6.14048698880044,2.41280881715411,7.42090332224955,11.2573076475939,3.01854933032316,11.7441833099747,5.19254429183621,10.5751444398563,0,3.40860999515584,3.59115856849996,14.007362676082,12.5642905924635,15.8660542100903,2.25599806453706,0.539107359730903,2.35304930753057,1.46139224653261,0.73886140225013,1.13733384070897,0.510281115829547,2.80690690932781,0,3.25135725052623,3.51182841698397,2.03901018436031,4.98645605357235,1.79099803777743,0,0,4.35965212697862,1.31205858279882,0,4.53380451249978,1.37354197227515,1.32015199872941,2.29706215198469,6.50060246036521,11.2478750890912,2.12675580242668,10.6293545809105,9.51722783302003,34.7348162661017,16.7575581994507,24.0727711897619,16.1078325816431,0.979352392114111,6.11554186835619,9.99388350298552,24.8844789364439,10.2169358664105,3.71876439437829,54.7773483485314,6.2733354314454,6.16067160352178,6.91997839412128,9.5692629128258,3.33583594387056,8.87374297800346,2.232950216158,9.49138274156178,35.4572160698314,20.9836188875294,16.6896205333229,1.90921948755562,3.13979456079692,20.5054601644979,17.5703699031075,23.5624804691373,5.86329196562617,6.34041284692033,5.05510147486777,18.5300820854044,5.36169677188826,6.33900880540533,12.1484921153107,11.7366508521582,5.65040583101214,7.71911480964574,9.28814565337708,13.5919774428666,17.9420415622673,15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| |||
|short_description=p1@CCBE1 | |||
}} |
Latest revision as of 01:36, 20 September 2015
Short description: | p1@CCBE1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CCBE1_5end |
Coexpression cluster: | C3733_Fibroblast_mesenchymal_bone_tridermal_myxofibrosarcoma_Hair_Myoblast |
Association with transcript: | 0bp_to_NM_133459, uc002lib.2_5end |
EntrezGene: | CCBE1 |
HGNC: | 29426 |
UniProt: | Q6UXH8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 9.98e-25 | 76 |
skin fibroblast | 5.58e-13 | 23 |
muscle precursor cell | 4.49e-12 | 58 |
myoblast | 4.49e-12 | 58 |
multi-potent skeletal muscle stem cell | 4.49e-12 | 58 |
electrically responsive cell | 4.09e-11 | 61 |
electrically active cell | 4.09e-11 | 61 |
muscle cell | 1.14e-10 | 55 |
mesodermal cell | 1.65e-08 | 121 |
embryonic cell | 2.16e-08 | 250 |
smooth muscle cell | 9.16e-08 | 43 |
smooth muscle myoblast | 9.16e-08 | 43 |
Ontology term | p-value | n |
---|---|---|
surface structure | 2.97e-20 | 99 |
multilaminar epithelium | 7.84e-19 | 83 |
dense mesenchyme tissue | 4.66e-17 | 73 |
somite | 1.32e-16 | 71 |
presomitic mesoderm | 1.32e-16 | 71 |
presumptive segmental plate | 1.32e-16 | 71 |
dermomyotome | 1.32e-16 | 71 |
trunk paraxial mesoderm | 1.32e-16 | 71 |
paraxial mesoderm | 1.63e-16 | 72 |
presumptive paraxial mesoderm | 1.63e-16 | 72 |
epithelial vesicle | 1.50e-15 | 78 |
integument | 5.75e-14 | 46 |
integumental system | 5.75e-14 | 46 |
trunk mesenchyme | 6.21e-14 | 122 |
mesenchyme | 1.49e-13 | 160 |
entire embryonic mesenchyme | 1.49e-13 | 160 |
skin of body | 1.60e-13 | 41 |
muscle tissue | 3.47e-12 | 64 |
musculature | 3.47e-12 | 64 |
musculature of body | 3.47e-12 | 64 |
trunk | 3.62e-12 | 199 |
skeletal muscle tissue | 4.27e-12 | 62 |
striated muscle tissue | 4.27e-12 | 62 |
myotome | 4.27e-12 | 62 |
unilaminar epithelium | 5.04e-12 | 148 |
cell layer | 3.25e-10 | 309 |
epithelium | 7.72e-10 | 306 |
dermis | 8.04e-07 | 9 |
dermatome | 8.04e-07 | 9 |
future dermis | 8.04e-07 | 9 |
subdivision of skeletal system | 8.93e-07 | 16 |