FFCP PHASE1:Hg19::chr1:100111275..100111307,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=54873 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15846 | |||
|TSSclassifier=strong | |||
|UniProt=Q9NP74 | |||
|association_with_transcript=-123bp_to_NM_017734,uc001dsf.2,uc001dsg.2_5end | |||
|cluster_id=chr1:100111275..100111307,+ | |||
|coexpression_cluster_id=C53 | |||
|description=CAGE_peak_7_at_PALMD_5end | |||
|id=chr1:100111275..100111307,+ | |||
|ontology_enrichment_celltype=CL:0002139!2.01e-21!24;CL:0000071!2.87e-16!18;CL:0002546!2.87e-16!18;CL:0000115!1.57e-15!35;CL:0002078!6.15e-13!44;CL:0002543!6.49e-09!6;CL:1000413!1.18e-08!9;CL:0000213!3.07e-08!57;CL:0000215!3.07e-08!57 | |||
|ontology_enrichment_celltype_v019=CL:0002139;7.38e-26;24!CL:0002138;4.48e-20;6!CL:0000115;6.77e-16;36!CL:0002618;7.40e-15;3!CL:0002543;8.99e-13;6!CL:0000071;8.34e-12;18!CL:0002078;8.20e-10;45!CL:0000213;2.17e-08;58!CL:0000215;2.17e-08;58 | |||
|ontology_enrichment_celltype_v019_2=CL:0002139,4.85e-26,24;CL:0005020,2.99e-20,6;CL:0002138,2.99e-20,6;CL:0005022,2.99e-20,6;CL:0000115,1.67e-19,36;CL:0002078,4.83e-15,45;CL:0002618,1.06e-14,3;CL:0002543,9.63e-13,6;CL:0000071,7.25e-12,18;CL:0002546,7.25e-12,18;CL:0000213,4.70e-11,58;CL:0000215,4.70e-11,58 | |||
|ontology_enrichment_development_v019=CL:0005022;4.48e-20;6!CL:0002546;8.34e-12;18!UBERON:0003056;2.66e-07;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001986!2.87e-16!18;UBERON:0004638!2.87e-16!18;UBERON:0004852!2.87e-16!18;UBERON:0000477!5.35e-16!286;UBERON:0007023!2.70e-15!115;UBERON:0000487!4.56e-14!22;UBERON:0006914!3.28e-13!25;UBERON:0004111!3.81e-11!241;UBERON:0001557!1.70e-10!19;UBERON:0000467!5.28e-10!625;UBERON:0000480!6.34e-10!626;UBERON:0000468!7.32e-10!659;UBERON:0000063!2.14e-09!97;UBERON:0000481!7.21e-09!347;UBERON:0003915!1.18e-08!9;UBERON:0004700!1.18e-08!9;UBERON:0001917!1.18e-08!9;UBERON:0000025!1.28e-08!194;UBERON:0002049!2.46e-08!79;UBERON:0007798!2.46e-08!79;UBERON:0001009!5.32e-08!113;UBERON:0001737!6.41e-08!9;UBERON:0000055!8.46e-08!69;UBERON:0000483!1.56e-07!309;UBERON:0000922!1.75e-07!612;UBERON:0000064!2.19e-07!219;UBERON:0000119!2.85e-07!312;UBERON:0003103!2.98e-07!69;UBERON:0004872!4.94e-07!84;UBERON:0003914!6.88e-07!118;UBERON:0002050!8.24e-07!605;UBERON:0005423!8.24e-07!605 | |||
|ontology_enrichment_uberon_v019=UBERON:0001473;5.36e-15;8!UBERON:0004536;5.36e-15;8!UBERON:0006558;5.36e-15;8!UBERON:0002465;6.05e-12;10!UBERON:0004638;8.34e-12;18!UBERON:0001986;8.34e-12;18!UBERON:0004852;8.34e-12;18!UBERON:0002133;1.52e-10;2!UBERON:0000487;1.72e-09;22!UBERON:0002066;4.19e-09;5!UBERON:0001638;1.52e-08;9!UBERON:0003920;1.52e-08;9!UBERON:0004582;1.52e-08;9!UBERON:0006914;3.05e-08;25!UBERON:0004151;1.22e-07;3!UBERON:0000490;2.65e-07;33!UBERON:0003978;2.66e-07;3!UBERON:0000946;2.66e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001473,3.97e-15,8;UBERON:0004536,3.97e-15,8;UBERON:0006558,3.97e-15,8;UBERON:0000055,2.45e-12,68;UBERON:0002465,4.78e-12,10;UBERON:0004638,7.25e-12,18;UBERON:0001986,7.25e-12,18;UBERON:0004852,7.25e-12,18;UBERON:0002049,2.44e-10,78;UBERON:0007798,2.44e-10,78;UBERON:0002133,2.64e-10,2;UBERON:0001009,1.08e-09,112;UBERON:0000487,1.54e-09,22;UBERON:0002066,5.18e-09,5;UBERON:0004535,8.91e-09,109;UBERON:0001638,1.59e-08,9;UBERON:0003920,1.59e-08,9;UBERON:0004582,1.59e-08,9;UBERON:0006914,2.77e-08,25;UBERON:0004151,1.18e-07,3;UBERON:0003978,3.83e-07,3;UBERON:0009751,3.83e-07,3;UBERON:0000946,3.83e-07,3;UBERON:0002523,3.83e-07,3;UBERON:0005983,3.83e-07,3;UBERON:0002165,3.83e-07,3;UBERON:0002062,3.83e-07,3;UBERON:0007280,3.83e-07,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.434539556882471,0,0.486634870302636,0.283604451492204,0,0.263504357079378,0.0654895377488563,0,0,0,0,0,0,0,0,1.19257444420023,0,0.694281003215189,0.56530794192401,1.67799774483962,0.550236083880135,0.417989933073621,2.32575083252396,3.20189636418039,6.35969164252873,0.402829317109147,0,0.488124115096339,0.367663080345869,1.62028389576352,3.57198913136319,1.12264686313085,1.46394924628319,1.53316637465883,0.949265659568129,0.916008719652036,0,0,0,0,0,0,0,0,0.560677600142307,0,0,0,0.269421344139376,0.163461903113459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.567160915800105,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0.236613600079688,0.337169380156203,0.723033089650446,0.661763836394364,0.653638332277218,0.949082476444386,0.539325232640658,0.392442930250692,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.44331342025273,0,0,1.44366447761074,0,1.71228737011138,0,0,0,0,0,0,0.16798212819886,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.773288812777695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.340187410553031,0.863663664408557,1.54227252690289,0,0,0,0,0,0,0,0.769350375349168,0.328014645699706,0.976135183992909,0.206082023295445,0,0.082509499920588,0,0,0,0.096670718292122,0,0,0,0,0,0,0.0890320356467374,0,0,0,0,0,0,0,0,0,0,0.18532421910392,0,0.372158369359667,0.316379424718726,0,0,0,0,0,0.179872457583315,0,0,0,0,0,0,0,0,0,0,0,0,1.99031692572366,0,0,0,0,0,0,0,0,0,0,0,0.329294892959902,0,0,0,0,0,0.564862804660675,0,0,0,0,0,0,0,0,0,0,0,0,5.66167576975608,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.586032717087576,0,0,0,0,0,0,0.994147647766298,0.140669416410513,0,0,0,0.19924798825107,0,0,0,0,0.311039587661807,0,0,0,0.197286811273867,0,0,0,0.0927680981618513,0,0,0,0,0,0.508507300585533,0,0,0,0,0,0,0,0.110579259931225,0,0.438770794307945,0.653630781113941,0.139423744278603,0.538651809526579,0,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0.167821586975843,0,0,0,0,0,0,0,0.176915129006678,0.611030144933625,0,0,0,0.269604531922708,1.60515529459758,0,0,0,0,1.18375320854817,0,0,0.126373159256976,0,0,0,0,0,0,0,0,0,0.391969589657511,0,0.17472666824203,0,0,0.0730893170861856,0,0.775912131907355,0,0.225980740780532,0,0,0.0633107959558787,0,0.721429382263803,0.213452994739353,18.382484081556,0,0,0,0,0,0.942776138467182,0.135904206073614,0,0,0,0,0,0,0,0,1.11712960508902,0.687481272035051,2.87149209830726,0.199679000498991,0.429226048136571,3.79391477651183,1.74677028465488,0,0,0.630265458457789,0.412079291905832,0.606631894687664,0,0,0,0.408610218334727,0,0,0,0,0,0.121499113316049,0,0.0788057072991982,0.0524545881349981,0,0,0,0.714695326373367,7.28301167401975,0,0,0,0,0,0,0,0,0.293104467356165,0,0,0.13223260174269,0,0.704815022316672,0.961086713109252,0.78602152549833,0,0,0,0,0,0,1.0027595760908,1.22538230705385,0.655745261419609,0,0,0,0.1251909307065,3.44045517414043,0.887432412294818,0.124192805882767,84.3926673111008,1.37478448758317,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192619830407303,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107824811396682,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0.504143392443436,0,0.161475645631851,1.42769420259154,0,0.235939446695481,0,0.115525666150338,0,0,0,0.225630985047772,0,0,0,0.163771917510097,0,0,0,0,0.0634158101939068,0,0.548257766857182,1.48863353516788,0,1.14986184875636,0.535701835878287,0,0,0,0.532214220975833,0,0.857440047187092,0.0679697329768317,0,0,0,0.078493092850514,0,0,1.82631744101899,0.215927591218621,0,0,2.52821778772363,0,0.173858272302579,0,0.414432328326074,0.17071847709395,0,0,0,0,0,1.3746412112643,0,0,0,0,0,0,1.23195368227496,1.1598144313382,1.45713297917742,0,0,0,0.22589216407792,10.0045870238341,0,0,0,0,0.245148321753905,0.235676547101626,0.392616934229891,0,1.6906229103336,0,0.187967835959707,0.644578879735772,0,0.892769693028288,0,0,0.730336388246517,0,0,0,0,0.872701380680755,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213233981900981,0.952257725854961,0.0645889098360061,0.0620747142958579,0,0,0.202117188958219,1.08858373948481,0.684466602170562,0.134704106029175,0.286888821570705,1.33064142618405,0,0,0,0.0898252021065869,0,0.366724332548599,1.22068853494722,0,0,0 | |||
|short_description=p7@PALMD | |||
}} |
Latest revision as of 03:04, 25 September 2015
Short description: | p7@PALMD |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_PALMD_5end |
Coexpression cluster: | C53_medulloblastoma_pineal_retinoblastoma_small_retina_eye_pituitary |
Association with transcript: | -123bp_to_NM_017734, uc001dsf.2, uc001dsg.2_5end |
EntrezGene: | PALMD |
HGNC: | 15846 |
UniProt: | Q9NP74 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of vascular tree | 4.85e-26 | 24 |
lymphangioblast | 2.99e-20 | 6 |
endothelial cell of lymphatic vessel | 2.99e-20 | 6 |
vascular lymphangioblast | 2.99e-20 | 6 |
endothelial cell | 1.67e-19 | 36 |
meso-epithelial cell | 4.83e-15 | 45 |
endothelial cell of umbilical vein | 1.06e-14 | 3 |
vein endothelial cell | 9.63e-13 | 6 |
blood vessel endothelial cell | 7.25e-12 | 18 |
embryonic blood vessel endothelial progenitor cell | 7.25e-12 | 18 |
lining cell | 4.70e-11 | 58 |
barrier cell | 4.70e-11 | 58 |
Ontology term | p-value | n |
---|---|---|
lymphatic vessel | 3.97e-15 | 8 |
lymph vasculature | 3.97e-15 | 8 |
lymphatic part of lymphoid system | 3.97e-15 | 8 |
vessel | 2.45e-12 | 68 |
lymphoid system | 4.78e-12 | 10 |
blood vessel endothelium | 7.25e-12 | 18 |
endothelium | 7.25e-12 | 18 |
cardiovascular system endothelium | 7.25e-12 | 18 |
vasculature | 2.44e-10 | 78 |
vascular system | 2.44e-10 | 78 |
atrioventricular valve | 2.64e-10 | 2 |
circulatory system | 1.08e-09 | 112 |
simple squamous epithelium | 1.54e-09 | 22 |
umbilical vein | 5.18e-09 | 5 |
cardiovascular system | 8.91e-09 | 109 |
vein | 1.59e-08 | 9 |
venous blood vessel | 1.59e-08 | 9 |
venous system | 1.59e-08 | 9 |
squamous epithelium | 2.77e-08 | 25 |
cardiac chamber | 1.18e-07 | 3 |
valve | 3.83e-07 | 3 |
cardiac mesenchyme | 3.83e-07 | 3 |
cardial valve | 3.83e-07 | 3 |
tunica intima | 3.83e-07 | 3 |
heart layer | 3.83e-07 | 3 |
endocardium | 3.83e-07 | 3 |
endocardial cushion | 3.83e-07 | 3 |
presumptive endocardium | 3.83e-07 | 3 |