FFCP PHASE1:Hg19::chr22:33255587..33255606,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7078 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=11822 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=124bp_to_X80791_5end | |||
|cluster_id=chr22:33255587..33255606,+ | |||
|coexpression_cluster_id=C50 | |||
|description=CAGE_peak_6_at_TIMP3_5end | |||
|id=chr22:33255587..33255606,+ | |||
|ontology_enrichment_celltype=CL:0000055!5.98e-12!180;CL:0000057!1.46e-10!75;CL:0002334!3.27e-08!12;CL:0000136!2.66e-07!15 | |||
|ontology_enrichment_celltype_v019=CL:0002334;2.57e-11;12!CL:0000349;3.43e-07;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.18e-14,76;CL:0002334,3.75e-11,12;CL:0000136,1.25e-07,15;CL:0000349,3.40e-07,19 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004923!2.04e-10!57;UBERON:0000475!6.35e-10!365;UBERON:0003102!2.42e-08!95;UBERON:0000468!5.77e-08!659;UBERON:0005631!6.00e-07!14;UBERON:0000158!6.00e-07!14;UBERON:0002199!6.96e-07!45;UBERON:0002416!6.96e-07!45 | |||
|ontology_enrichment_uberon_v019=UBERON:0001013;1.28e-07;14!UBERON:0004457;1.41e-07;9!UBERON:0000042;1.41e-07;9!UBERON:0003688;6.75e-07;6!UBERON:0002358;6.75e-07;6!UBERON:0003684;6.75e-07;6!UBERON:0001178;6.75e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004923,8.81e-12,66;UBERON:0005631,2.98e-09,14;UBERON:0000158,2.98e-09,14;UBERON:0002199,3.17e-08,46;UBERON:0002416,3.17e-08,46;UBERON:0001013,1.19e-07,14;UBERON:0003124,2.67e-07,7;UBERON:0004457,3.43e-07,12;UBERON:0000042,3.43e-07,12;UBERON:0003102,3.95e-07,99;UBERON:0003688,6.45e-07,6;UBERON:0002358,6.45e-07,6;UBERON:0003684,6.45e-07,6;UBERON:0001178,6.45e-07,6 | |||
|phase1_expression=3.45188920614058,9.20632252731228,4.79244973926302,12.0087958023756,5.81049422755474,12.2127393374052,7.59899634504932,2.52687949370732,0.261185628199839,1.22866968250754,1.39560233594486,4.80571018686379,2.90143676051299,0.123766352960047,0.331397375727916,2.01697543935533,1.20538905604795,0.730310090387373,2.92759679274304,0.246242116153576,0,0.940364164434263,0,0.684372125364421,0.502170558379211,0,0,0,0,0,0.309632246632152,0,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,0,0.639312809217652,0.722878304769133,0.50133791063589,2.31754430337318,0.795285947051099,12.6525066278685,0.189069634328136,0.443458794925128,0.351339142772504,2.29213382120997,0.364295288292542,0.741568885568859,0.324547393654683,0.174129737299267,0.26591592103773,0,0,0,0,0,0,0,0,0,0,0,0.35576626268671,0.66944122552934,0,0,1.22031028774085,0,0,0.17859945656816,0,0.112611480483322,0,0,0,0,0,1.3082821564276,14.9091585508596,4.68532893158945,1.58891016975863,7.45775213946916,1.77334191099179,2.24271040056923,2.1349799145941,2.71334303258876,0.311211035399766,0.134710672069688,0.326923806226917,0.756787138224657,0,2.10889288650417,0.936480230490962,0,0.896692083310806,0,0,0,0,1.35117749042945,0.826606249406124,2.37600571456411,8.65434252474949,0,0.718618141816238,0,0.250237039743928,0,1.31693286264251,1.83892677479412,3.00476117813194,0.340296549480063,3.7671823494661,2.34913127700424,7.62954844174423,9.60291507470087,2.47326070172253,3.86460810068444,5.95573940261087,9.11392194102838,2.14361411354637,3.02920529092937,2.66944706062668,5.17267381820198,4.61512470271599,1.41052937518696,2.03472710772585,0.57978255948989,0.272746120590835,0,0,0,0,0.10366105501537,0,0.36497735907583,4.69348596989448,7.71889125831462,4.14404764057442,1.39310378409594,0.721879481669586,0.118306800039844,0.168584690078102,0.241011029883482,0.55146986366197,0.435758888184812,0.474541238222193,0.539325232640658,0.784885860501384,0.38474715694639,0.738155454624648,2.80483547606892,1.2347220339942,0,0,0,0.590789906681404,0,0.614942192715568,0,0.439001141634502,0,0,0.0925884451585296,6.19035780089617,0,1.44331342025273,0.115930404975077,0.117408694235822,0.288732895522148,0.925971025153221,2.85381228351897,0,0,0,0.234004265139238,0,0,0.503946384596579,0.708875486211932,1.07470227243418,0.581267877027924,0.766765358330422,0.492663237895943,0.968532774145487,2.07328115540772,2.01767934783746,2.65109110195398,0.253991577168676,1.14596527667483,0,1.71072446022705,3.80461723002297,7.80891950394185,0.285826432630578,1.68196626518041,0.43596006883328,2.3468251462704,3.49033632546,0,1.690605505112,0.26593811658487,0,0.771622122786426,1.41849132023278,0.266422179016099,0.428933980974443,1.08524321078289,0,2.28015329005615,1.06617584622764,0,0.904318131178758,0,1.99945982364114,0,0,4.21667878966063,0,1.14861935834114,0,0.289562613335158,0.205476322550383,0,0,0,0,0,0.508189248444927,0,0,0,0,0,0,0,0.24538298343828,0.500170521059677,0.813795071099207,3.32753378449291,7.67244651827796,1.89242898040722,0.585707074963566,0.601892199455438,4.5481500811197,4.1389228517002,0,1.47495334833363,2.78027566297865,3.52442083432933,3.43143423810856,0,0,0,1.81876542867756,4.99306318531491,2.11673205330776,7.19512642674453,5.21770709179412,8.13914273855913,4.35673107469383,15.3512174720011,13.8334372183502,8.90508398669946,9.40679132196199,11.5415121453533,2.46381468041427,1.03850885836724,6.62399157221768,1.0877350463246,1.60405176242628,0.460404944679482,1.03333003348146,0.182091168006717,1.04899531967539,0,0.15403067420883,0,0,0,2.27466768141793,0.340187410553031,1.29549549661284,0,0,0,0,0,0,0,0,1.02580050046556,4.92021968549559,4.55529752530024,1.75169719801128,0,0,0,1.30012049207304,0,1.06337790121334,0.616194468458578,0.307007349452259,0.275673144969061,0.214840489736547,0.145016693914229,0.596586391912706,0.445160178233687,1.15699440752685,2.11409074101617,0.382838137483752,0.50578890427775,5.57814659156743,10.7036197922418,0.6970372701606,0.924100740528266,1.59691809095107,0,0.37064843820784,0.143124886741991,1.116475108079,0.949138274156178,0.953150969619124,3.07077349573601,41.0821428512564,0,2.35484592059769,0.359744915166629,0.274537029736055,0,0.808729926293264,4.75530963519025,0.842516912477962,0,8.28625864746367,24.2995337540537,0.682499557039929,1.55545975149084,4.52032466480971,1.65409603063837,3.3171948762061,4.38450885253763,1.73632660280006,3.27947376023316,0.405820753925408,0,0,0.573645408816206,1.47373561519682,0.35667105148125,0.354761064070598,10.3442741295855,13.501090611356,1.89736586882858,2.0996083214699,0.192444225451024,0,0,2.63602642174982,0.86101074534246,3.36942951335251,0,0,0,0,0,0,0,0,0,0,0,0,0.490080431962063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223676107892416,0,0,0,0,1.6227340708559,0,0,0,7.61842532213849,0,0,0,22.6807260500806,4.75143489332222,32.251873720419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| |||
|short_description=p6@TIMP3 | |||
}} |
Latest revision as of 22:41, 19 September 2015
Short description: | p6@TIMP3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_TIMP3_5end |
Coexpression cluster: | C50_chorionic_placenta_amniotic_migratory_smallcell_chronic_choriocarcinoma |
Association with transcript: | 124bp_to_X80791_5end |
EntrezGene: | TIMP3 |
HGNC: | 11822 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.18e-14 | 76 |
preadipocyte | 3.75e-11 | 12 |
fat cell | 1.25e-07 | 15 |
extraembryonic cell | 3.40e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
organ component layer | 8.81e-12 | 66 |
extraembryonic membrane | 2.98e-09 | 14 |
membranous layer | 2.98e-09 | 14 |
integument | 3.17e-08 | 46 |
integumental system | 3.17e-08 | 46 |
adipose tissue | 1.19e-07 | 14 |
chorion | 2.67e-07 | 7 |
cavity lining | 3.43e-07 | 12 |
serous membrane | 3.43e-07 | 12 |
surface structure | 3.95e-07 | 99 |
omentum | 6.45e-07 | 6 |
peritoneum | 6.45e-07 | 6 |
abdominal cavity | 6.45e-07 | 6 |
visceral peritoneum | 6.45e-07 | 6 |