FFCP PHASE1:Hg19::chr2:163645495..163645498,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr2:163645495..163645498,- | |||
|coexpression_cluster_id=C2567 | |||
|description=CAGE_peak_at_chr2:163645495..163645498,- | |||
|id=chr2:163645495..163645498,- | |||
|ontology_enrichment_celltype=CL:0000242!5.62e-07!2 | |||
|ontology_enrichment_celltype_v019=CL:0000123;5.49e-09;2!CL:0000242;5.49e-09;2!CL:0000047;7.49e-09;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000242,5.08e-09,2 | |||
|ontology_enrichment_development_v019=UBERON:0005425;2.25e-16;1 | |||
|ontology_enrichment_disease=DOID:171!3.69e-09!10;DOID:169!2.75e-07!6 | |||
|ontology_enrichment_disease_v019=DOID:3119;1.87e-10;14!DOID:154;7.49e-09;2!DOID:4236;7.49e-09;2 | |||
|ontology_enrichment_disease_v019_2=DOID:3119,1.90e-10,14;DOID:154,6.94e-09,2;DOID:4236,6.94e-09,2 | |||
|ontology_enrichment_uberon=UBERON:0002780!7.09e-41!41;UBERON:0001890!7.09e-41!41;UBERON:0006240!7.09e-41!41;UBERON:0003080!9.66e-40!42;UBERON:0001869!2.48e-38!32;UBERON:0001049!8.08e-37!57;UBERON:0005068!8.08e-37!57;UBERON:0006241!8.08e-37!57;UBERON:0007135!8.08e-37!57;UBERON:0000073!2.54e-36!94;UBERON:0001016!2.54e-36!94;UBERON:0001893!9.29e-36!34;UBERON:0002020!1.70e-35!34;UBERON:0003528!1.70e-35!34;UBERON:0002791!1.43e-33!33;UBERON:0002346!7.92e-33!90;UBERON:0002616!8.86e-33!59;UBERON:0001017!2.40e-32!82;UBERON:0005743!2.44e-32!86;UBERON:0001950!9.52e-31!20;UBERON:0003075!1.27e-30!86;UBERON:0007284!1.27e-30!86;UBERON:0000955!1.46e-30!69;UBERON:0006238!1.46e-30!69;UBERON:0000956!2.01e-30!25;UBERON:0000203!2.01e-30!25;UBERON:0002619!1.10e-27!22;UBERON:0003056!3.18e-27!61;UBERON:0000924!2.86e-23!173;UBERON:0006601!2.86e-23!173;UBERON:0004121!1.71e-21!169;UBERON:0007023!2.01e-20!115;UBERON:0000033!5.36e-17!123;UBERON:0000153!8.48e-16!129;UBERON:0007811!8.48e-16!129;UBERON:0001871!1.46e-12!7;UBERON:0000369!1.13e-10!4;UBERON:0002435!1.13e-10!4;UBERON:0000204!1.13e-10!4;UBERON:0010082!1.13e-10!4;UBERON:0001872!2.02e-09!5;UBERON:0000025!2.63e-09!194;UBERON:0002021!2.92e-09!5;UBERON:0005383!1.79e-08!3;UBERON:0005382!1.79e-08!3;UBERON:0000200!8.91e-08!6;UBERON:0002420!4.51e-07!9;UBERON:0007245!4.51e-07!9;UBERON:0010009!4.51e-07!9;UBERON:0010011!4.51e-07!9;UBERON:0000454!4.51e-07!9;UBERON:0003296!5.40e-07!4;UBERON:0010133!5.40e-07!4;UBERON:0002308!6.08e-07!9;UBERON:0000125!6.08e-07!9;UBERON:0000007!8.13e-07!2 | |||
|ontology_enrichment_uberon_v019=UBERON:0000941;2.25e-16;1!UBERON:0001785;2.25e-16;1!UBERON:0002464;2.25e-16;1!UBERON:0004904;2.25e-16;1!UBERON:0001021;2.25e-16;1!UBERON:0001950;3.91e-12;20!UBERON:0002619;4.19e-11;22!UBERON:0000956;7.45e-10;25!UBERON:0000203;7.45e-10;25!UBERON:0001871;8.91e-10;6!UBERON:0000007;7.49e-09;2!UBERON:0003714;7.49e-09;2!UBERON:0005162;7.49e-09;2!UBERON:0000122;7.49e-09;2!UBERON:0000922;3.27e-08;49!UBERON:0002780;3.68e-08;41!UBERON:0001890;3.68e-08;41!UBERON:0002791;1.16e-07;32!UBERON:0001869;1.46e-07;32!UBERON:0003528;5.41e-07;34!UBERON:0002020;5.41e-07;34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000941,2.25e-16,1;UBERON:0001785,2.25e-16,1;UBERON:0002464,2.25e-16,1;UBERON:0004904,2.25e-16,1;UBERON:0001021,2.25e-16,1;UBERON:0003902,2.25e-16,1;UBERON:0005425,2.25e-16,1;UBERON:0001950,3.80e-12,20;UBERON:0002619,4.08e-11,22;UBERON:0000956,7.28e-10,25;UBERON:0000203,7.28e-10,25;UBERON:0001871,8.35e-10,6;UBERON:0002780,3.42e-09,41;UBERON:0001890,3.42e-09,41;UBERON:0003080,3.42e-09,41;UBERON:0006240,3.42e-09,41;UBERON:0003714,7.49e-09,2;UBERON:0005162,7.49e-09,2;UBERON:0000122,7.49e-09,2;UBERON:0000007,8.74e-09,2;UBERON:0003056,1.12e-08,61;UBERON:0002791,8.03e-08,32;UBERON:0001869,8.03e-08,32;UBERON:0001016,1.10e-07,89;UBERON:0003528,2.19e-07,34;UBERON:0002020,2.19e-07,34;UBERON:0001893,2.19e-07,34;UBERON:0000073,3.87e-07,53;UBERON:0002616,3.87e-07,53;UBERON:0001049,9.27e-07,56;UBERON:0005068,9.27e-07,56;UBERON:0006241,9.27e-07,56;UBERON:0007135,9.27e-07,56 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286235987131057,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19891667719909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16798212819886,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30139853857622,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821271560138091,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0.411362273086194,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121360521749513,0,0,0,0,0,0,0.281338832821026,0.111308705022906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.969332746095218,0.0927680981618513,0,0,0,0,0,0,0,2.06846023944879,0.874813840149763,1.73624994933292,0.885741385813839,0.120596438625408,0,0.110579259931225,0,0.438770794307945,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.652931232636591,0,0,0,0,0,0,0.247127877893006,0,0,0,0.234264445725339,0,0,0,0,2.41981432097328,3.97894590119637,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.50648636764703,0,0,0,0,0,0.114536596165916,3.26030495937733,0,0,0,0,0,0,0,0,0,0,0,0,0.279282401272254,0.229160424011684,0,0.199679000498991,0,0.223171457441873,0.201550417460179,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.182248669974074,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.732157589411779,0.500763722825999,0,0,0,0,0,0,0,0,2.81000943484129,0.579684114443301,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163565394255844,0,0,0,0,0,0,0,0,0,0,0.76736622782191,0,0.157265941855896,0.218419276384028,0.509197589862076,0,0.247871528518004,0,0,0,0.80057074828547,0,0,0.192687675289379,0,0.319267718114302,0.41023272848151,3.78107544332577,0.276629009856872,0.161475645631851,1.42769420259154,0,0,0,0,0,0,0,0,0,0,0,0,0,0.472763092328763,0,0.413373593002368,0.380494861163441,6.56369770821863,0,0,0,0,0,0.336283722218824,1.21393120847326,0.455324382702595,0,0,0,0.0679697329768317,0.394636641377094,0,0,0,0.157115589916002,0,0,0,0,0.142953088353313,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109940516745429,0.754814217833368,0,0,1.88126918544609,0,0.235676547101626,0,0.297046400327086,0,0,0,0,0,0,0,0,0,0,0,0,0.339957450954573,3.9271562130634,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr2:163645495..163645498,- | |||
}} |
Latest revision as of 02:00, 29 July 2015
Short description: | p@chr2:163645495..163645498, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:163645495..163645498, - |
Coexpression cluster: | C2567_merkel_neuroblastoma_parietal_occipital_duodenum_temporal_brain |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Merkel cell | 5.08e-09 | 2 |
Ontology term | p-value | n |
---|---|---|
cranial nerve II | 2.25e-16 | 1 |
cranial nerve | 2.25e-16 | 1 |
nerve trunk | 2.25e-16 | 1 |
nerve connecting eye with brain | 2.25e-16 | 1 |
nerve | 2.25e-16 | 1 |
retinal neural layer | 2.25e-16 | 1 |
presumptive neural retina | 2.25e-16 | 1 |
neocortex | 3.80e-12 | 20 |
regional part of cerebral cortex | 4.08e-11 | 22 |
cerebral cortex | 7.28e-10 | 25 |
pallium | 7.28e-10 | 25 |
temporal lobe | 8.35e-10 | 6 |
regional part of forebrain | 3.42e-09 | 41 |
forebrain | 3.42e-09 | 41 |
anterior neural tube | 3.42e-09 | 41 |
future forebrain | 3.42e-09 | 41 |
neural tissue | 7.49e-09 | 2 |
multi cell component structure | 7.49e-09 | 2 |
neuron projection bundle | 7.49e-09 | 2 |
pituitary gland | 8.74e-09 | 2 |
pre-chordal neural plate | 1.12e-08 | 61 |
regional part of telencephalon | 8.03e-08 | 32 |
cerebral hemisphere | 8.03e-08 | 32 |
nervous system | 1.10e-07 | 89 |
brain grey matter | 2.19e-07 | 34 |
gray matter | 2.19e-07 | 34 |
telencephalon | 2.19e-07 | 34 |
regional part of nervous system | 3.87e-07 | 53 |
regional part of brain | 3.87e-07 | 53 |
neural tube | 9.27e-07 | 56 |
neural rod | 9.27e-07 | 56 |
future spinal cord | 9.27e-07 | 56 |
neural keel | 9.27e-07 | 56 |
Ontology term | p-value | n |
---|---|---|
gastrointestinal system cancer | 1.90e-10 | 14 |
mixed cell type cancer | 6.94e-09 | 2 |
carcinosarcoma | 6.94e-09 | 2 |