FFCP PHASE1:Hg19::chr2:237076971..237076978,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2637 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4186 | |||
|TSSclassifier=strong | |||
|UniProt=P52951 | |||
|association_with_transcript=33bp_to_ENST00000306318_5end | |||
|cluster_id=chr2:237076971..237076978,- | |||
|coexpression_cluster_id=C4202 | |||
|description=CAGE_peak_3_at_GBX2_5end | |||
|id=chr2:237076971..237076978,- | |||
|ontology_enrichment_celltype=CL:0002603!3.40e-14!3;CL:0000128!1.89e-10!7;CL:0000126!1.89e-10!7;CL:0000127!1.89e-10!7;CL:0002453!1.89e-10!7;CL:0002262!4.77e-10!2;CL:1000398!4.77e-10!2;CL:0000039!1.29e-09!7;CL:0000586!1.29e-09!7;CL:0000066!5.61e-07!254 | |||
|ontology_enrichment_celltype_v019=CL:0002603;7.81e-45;3!CL:0000128;6.48e-20;7!CL:0000126;6.48e-20;7!CL:0000127;6.48e-20;7!CL:0002262;9.07e-18;2!CL:1000398;9.07e-18;2!CL:0000243;8.23e-09;15!CL:0000125;8.23e-09;15!CL:0000095;5.54e-08;17 | |||
|ontology_enrichment_celltype_v019_2=CL:0002603,5.00e-45,3;CL:0000128,5.35e-20,7;CL:0000126,5.35e-20,7;CL:0000127,5.35e-20,7;CL:0002453,5.35e-20,7;CL:0002262,9.07e-18,2;CL:1000398,9.07e-18,2;CL:0000243,7.61e-09,15;CL:0000125,7.61e-09,15;CL:0000030,7.61e-09,15;CL:0000339,7.61e-09,15;CL:0000095,5.16e-08,17;CL:0000123,5.16e-08,17 | |||
|ontology_enrichment_development_v019=UBERON:0009847;2.59e-12;3!UBERON:0003353;2.59e-12;3!CL:0000339;8.23e-09;15 | |||
|ontology_enrichment_disease=DOID:3095!9.43e-11!22;DOID:2994!9.43e-11!22;DOID:0050687!7.99e-07!143 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004733!1.08e-08!12;UBERON:0002028!1.08e-08!12;UBERON:0007277!1.08e-08!12;UBERON:0004732!5.36e-08!13;UBERON:0002680!6.39e-08!9;UBERON:0001895!6.39e-08!9;UBERON:0010092!6.39e-08!9;UBERON:0002037!2.72e-07!6;UBERON:0006215!2.72e-07!6;UBERON:0003497!5.94e-07!3;UBERON:0003909!5.94e-07!3;UBERON:0003835!5.94e-07!3;UBERON:0001281!5.94e-07!3;UBERON:0003076!6.92e-07!15;UBERON:0003057!6.92e-07!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0002037;4.85e-23;6!UBERON:0001281;9.07e-18;2!UBERON:0003497;9.07e-18;2!UBERON:0003909;9.07e-18;2!UBERON:0003835;9.07e-18;2!UBERON:0002680;9.73e-16;9!UBERON:0001895;9.73e-16;9!UBERON:0001280;2.59e-12;3!UBERON:0004647;2.59e-12;3!UBERON:0004733;4.54e-12;12!UBERON:0002028;4.54e-12;12!UBERON:0004732;3.21e-11;13!UBERON:0001872;6.55e-08;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002037,3.88e-23,6;UBERON:0006215,3.88e-23,6;UBERON:0001281,9.07e-18,2;UBERON:0003497,9.07e-18,2;UBERON:0003909,9.07e-18,2;UBERON:0003835,9.07e-18,2;UBERON:0002680,8.39e-16,9;UBERON:0001895,8.39e-16,9;UBERON:0010092,8.39e-16,9;UBERON:0001280,2.59e-12,3;UBERON:0004647,2.59e-12,3;UBERON:0005171,2.59e-12,3;UBERON:0004733,4.07e-12,12;UBERON:0002028,4.07e-12,12;UBERON:0007277,4.07e-12,12;UBERON:0004732,2.90e-11,13;UBERON:0003076,6.78e-10,15;UBERON:0003057,6.78e-10,15;UBERON:0001872,7.49e-08,5;UBERON:0002394,8.48e-07,6;UBERON:0003928,8.48e-07,6 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.81675280038043,0.408001382488506,1.88072832886853,0.572471974262113,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.417989933073621,0,0,0,0,0,0,0.367663080345869,0,0,0,0,0,0,0.183201743930407,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.358779271377724,0,0,0,0,0,0,0,0,0,0,0,0,0.10075209822764,0.169560592310488,0,0,0,0,0,0.116193942869518,0.310983165046111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.738155454624648,1.40241773803446,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215915916102139,0,0,0,0,0,0.223874754722178,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.190630193923825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202910376962704,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.747768497892312,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.622079175323615,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236387681767936,0,0,0,0,0.120596438625408,0,0,0,0,0,0,0,0,0,0.179515288819544,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141353071433941,0,0,0,0,0,0,0,0.202203398942031,0,0,0,0,0.242780379534093,0,0,0,0,0.60129367765797,0,0,0,0,0,0,0.416024019039416,0.173559738335131,0,0,0,0,0,0.0730893170861856,0.0821154570532092,0,0,0.225980740780532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.124192805882767,0,0.124980407962107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176689145945881,0,0,0,0.345430341731199,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127894371303652,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.09394961803644,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.66847102838104,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118920090777569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.473314686579554,0,0,0,0,0,0,1.13549782351571,0.218531143927391,0.126698501011437,0.305966489225945,0.534434810531121,0.0918948995348449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p3@GBX2 | |||
}} |
Latest revision as of 02:16, 16 September 2015
Short description: | p3@GBX2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_GBX2_5end |
Coexpression cluster: | C4202_Hepatic_Astrocyte_testicular_teratocarcinoma_synovial_basal_prostate |
Association with transcript: | 33bp_to_ENST00000306318_5end |
EntrezGene: | GBX2 |
HGNC: | 4186 |
UniProt: | P52951 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
astrocyte of the cerebellum | 5.00e-45 | 3 |
oligodendrocyte | 5.35e-20 | 7 |
macroglial cell | 5.35e-20 | 7 |
astrocyte | 5.35e-20 | 7 |
oligodendrocyte precursor cell | 5.35e-20 | 7 |
endothelial cell of sinusoid | 9.07e-18 | 2 |
endothelial cell of hepatic sinusoid | 9.07e-18 | 2 |
glial cell (sensu Vertebrata) | 7.61e-09 | 15 |
glial cell | 7.61e-09 | 15 |
glioblast | 7.61e-09 | 15 |
glioblast (sensu Vertebrata) | 7.61e-09 | 15 |
neuron associated cell | 5.16e-08 | 17 |
neuron associated cell (sensu Vertebrata) | 5.16e-08 | 17 |
Ontology term | p-value | n |
---|---|---|
cerebellum | 3.88e-23 | 6 |
rhombic lip | 3.88e-23 | 6 |
hepatic sinusoid | 9.07e-18 | 2 |
abdomen blood vessel | 9.07e-18 | 2 |
sinusoid | 9.07e-18 | 2 |
abdominal segment blood vessel | 9.07e-18 | 2 |
regional part of metencephalon | 8.39e-16 | 9 |
metencephalon | 8.39e-16 | 9 |
future metencephalon | 8.39e-16 | 9 |
liver parenchyma | 2.59e-12 | 3 |
liver lobule | 2.59e-12 | 3 |
hepatic duct | 2.59e-12 | 3 |
segmental subdivision of hindbrain | 4.07e-12 | 12 |
hindbrain | 4.07e-12 | 12 |
presumptive hindbrain | 4.07e-12 | 12 |
segmental subdivision of nervous system | 2.90e-11 | 13 |
posterior neural tube | 6.78e-10 | 15 |
chordal neural plate | 6.78e-10 | 15 |
parietal lobe | 7.49e-08 | 5 |
bile duct | 8.48e-07 | 6 |
digestive system duct | 8.48e-07 | 6 |