FFCP PHASE1:Hg19::chr4:159093538..159093547,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=51313 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25312 | |||
|TSSclassifier=strong | |||
|UniProt=Q6UWH4,Q9NYZ0 | |||
|association_with_transcript=170bp_to_NM_016613,uc003ipp.3_5end | |||
|cluster_id=chr4:159093538..159093547,- | |||
|description=CAGE_peak_10_at_FAM198B_5end | |||
|id=chr4:159093538..159093547,- | |||
|ontology_enrichment_celltype=CL:0002057!3.59e-15!42;CL:0002194!8.66e-14!63;CL:0000576!8.66e-14!63;CL:0000040!8.66e-14!63;CL:0000559!8.66e-14!63;CL:0000860!5.73e-13!45;CL:0002009!1.03e-12!65;CL:0000839!1.71e-11!70;CL:0000557!5.91e-10!71;CL:0000766!3.26e-09!76;CL:0000048!8.60e-07!430 | |||
|ontology_enrichment_celltype_v019=CL:0000473;2.36e-08;39!CL:0000234;2.36e-08;39!CL:0000576;2.08e-07;48 | |||
|ontology_enrichment_celltype_v019_2=CL:0002194,3.98e-13,59;CL:0000576,3.98e-13,59;CL:0000040,3.98e-13,59;CL:0000559,3.98e-13,59;CL:0000048,4.56e-13,427;CL:0000723,1.72e-12,433;CL:0002009,2.03e-12,61;CL:0000473,2.66e-12,48;CL:0000234,2.66e-12,48;CL:0000034,9.43e-12,441;CL:0000839,7.53e-11,66;CL:0000557,1.45e-10,67;CL:0000860,8.20e-10,42;CL:0002057,8.20e-10,42;CL:0000766,2.81e-09,72;CL:0000136,2.41e-07,15;CL:0000134,3.67e-07,354;CL:0002320,5.57e-07,361 | |||
|ontology_enrichment_development_v019=CL:0002057;1.20e-07;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000468!1.51e-16!659;UBERON:0000467!7.98e-13!625;UBERON:0000480!1.22e-12!626;UBERON:0002204!1.23e-12!167;UBERON:0003081!2.18e-12!216;UBERON:0002050!4.30e-10!605;UBERON:0005423!4.30e-10!605;UBERON:0000926!4.95e-10!448;UBERON:0004120!4.95e-10!448;UBERON:0006603!4.95e-10!448;UBERON:0000922!5.57e-10!612;UBERON:0000923!1.02e-09!604;UBERON:0005291!1.02e-09!604;UBERON:0006598!1.02e-09!604;UBERON:0002532!1.02e-09!604;UBERON:0002371!6.29e-09!80;UBERON:0002390!1.20e-08!102;UBERON:0003061!1.20e-08!102;UBERON:0002193!1.89e-08!112;UBERON:0001474!3.43e-08!86;UBERON:0001009!8.30e-08!113;UBERON:0004535!1.73e-07!110;UBERON:0002405!2.21e-07!115;UBERON:0000479!6.22e-07!787;UBERON:0004765!7.95e-07!101;UBERON:0001434!7.95e-07!101;UBERON:0000062!9.97e-07!511 | |||
|ontology_enrichment_uberon_v019=UBERON:0003688;2.26e-08;6!UBERON:0002358;2.26e-08;6!UBERON:0003684;2.26e-08;6!UBERON:0001178;2.26e-08;6!UBERON:0000305;3.46e-08;7!UBERON:0004457;6.15e-07;9!UBERON:0000042;6.15e-07;9!UBERON:0000948;8.85e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000926,1.49e-20,315;UBERON:0004120,1.49e-20,315;UBERON:0006603,1.49e-20,315;UBERON:0003081,3.11e-13,203;UBERON:0002204,1.41e-11,167;UBERON:0004871,1.90e-09,8;UBERON:0002371,4.84e-09,76;UBERON:0000305,2.04e-08,7;UBERON:0002050,3.94e-08,564;UBERON:0003688,4.59e-08,6;UBERON:0002358,4.59e-08,6;UBERON:0003684,4.59e-08,6;UBERON:0001178,4.59e-08,6;UBERON:0000923,6.95e-08,560;UBERON:0010316,6.95e-08,560;UBERON:0005291,6.95e-08,560;UBERON:0006598,6.95e-08,560;UBERON:0010317,6.95e-08,560;UBERON:0002532,6.95e-08,560;UBERON:0001474,8.31e-08,82;UBERON:0002390,1.47e-07,98;UBERON:0003061,1.47e-07,98;UBERON:0002405,2.69e-07,93;UBERON:0002384,3.77e-07,371;UBERON:0005423,4.91e-07,581;UBERON:0004765,5.69e-07,90 | |||
|phase1_expression=1.63510541343501,1.2846031433459,2.81908808191942,1.0007329835313,1.34088328328186,0,0,0.631719873426831,0.522371256399677,0,0,1.96597234917155,1.58260186937072,0.866364470720326,0,0.672325146451775,0,0,0.975865597581014,0.246242116153576,0.204000691244253,0,0,0,0,0,0,0,0,0.767658796194425,0.619264493264304,0,0,0,0,0,0.293600439334847,1.10799081706375,1.00272223735071,0.868043482863407,2.46307021663917,1.6194683300949,1.03030227053675,0.726991193897824,1.13362783106643,0.970336244751265,0.697287110717054,0.822335776043652,1.54853185447552,2.3015391385772,1.0246428261164,0.709446689665756,2.75796544589295,1.93645405075148,1.35426486594342,1.50593871634084,0.818718450173537,1.34834090667051,0.918251677112708,0.962787081228281,0.639337125799041,0.989553900560148,0.598390972864896,1.70489900213078,0.580418477257168,0,1.24564449799115,0.75374599577023,2.60741459210101,0.868755378820466,0,2.20966581592539,0.316462387440884,1.69004229049553,1.91343869968539,1.46761051855863,2.3589012540764,2.55300717830561,3.69668849403284,0.570025487482497,0.59675003159727,1.0959849225878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236777252044017,0,0,0,0,0,4.02420515822182,3.06870148424473,1.80719576192283,0.50133791063589,0.144846518960824,0,0,0.283604451492204,1.55210578223795,0.87834785693126,0.327447688744282,0,0,0.649094787309367,1.56716763569341,1.06366368415092,0,0.571994910780128,0,0.39752481473341,0,0.347140501607594,0,0.419499436209906,0.275118041940067,0,0.258416759169329,0.71153252537342,2.34304428935269,0.805658634218294,0,0.732186172644509,0,0.81014194788176,1.87529429396568,0.22452937262617,0.563057402416611,0,0,0.183201743930407,0,0,0,0.496971951695318,0.633152558322899,1.98613771219828,3.72887606973458,2.12801029319014,2.80338800071154,0,1.48000529050296,1.8672662123986,2.15537075311501,0.163461903113459,0.454072282934794,1.72852777344,0,0,0,0.298897361103602,0,0,0,0,0,0.723280468230358,0,0,0,0,0,0,0.277064115484183,0,0,0.150238058906597,0.907457465280168,0.179389635688862,1.06778694409284,1.69545520927649,0.600182192168805,0.515262646192195,0.515281080091258,0.930584281657949,0.337552664482532,0.292311015483596,0,0.920498986422993,1.61646056818812,2.4850671476163,0.503760491138201,0,0,0,0,0,0,0.232387885739037,0.310983165046111,0,0,1.56449532329816,0,0,4.64367928031979,2.16563844500876,0,0,0,0,0,0,0,0,0,0.738155454624648,0,0.4115740113314,0,0,0,0,0,0.122988438543114,0.343135620597051,0.329250856225877,0,0,0.0925884451585296,0,0,0,0,1.40890433082986,0.288732895522148,0.462985512576611,0.761016608938393,0,0.858486162094873,1.96973604869918,1.63802985597466,1.78357394746474,0,0.503946384596579,0.141775097242386,0.0895585227028483,0,0.383382679165211,0,0,0,0,0,0.063497894292169,0,0,0,0,0,0,0,0,0,1.03417372606222,0,0,1.86156681609409,1.04007436911366,0,0,0,4.86125178437702,1.62786481617433,0,0.65147236858747,3.55391948742546,0,1.50719688529793,0,0.899756920638513,0,3.51579964002488,0,0.479249710983165,0,0,1.88215698667853,1.2328579353023,2.50685348535854,0,0,0,0,3.55732473911449,0,0,0.167516265334349,0,0,0,0,0.36807447515742,1.00034104211935,0.542530047399471,0.207970861530807,0,0.473107245101804,0,0.601892199455438,0,0,0.664225598535437,0.368738337083406,0.60818530127658,0,0,1.03384013061444,1.07857100409308,0.320182673410333,0,0,1.5119514666484,2.23297027036899,0.460385919864187,1.40330047216537,2.69092213436972,1.53512174720011,2.0911009748669,0,0.616838775210622,0.887808626565635,3.03870477251094,0,1.97557643381931,0.120859449591622,1.20303882181971,0.184161977871793,1.95184561879831,1.45672934405374,1.57349297951309,0,0,0,0,0,0,0.170093705276516,0.647747748306418,0,0,0,0,0,0,0.438519753291869,0.522870902049801,0,0.328014645699706,0,0.515205058238611,0.54941678891006,0.330037999682352,0,0.650060246036521,1.6068392984416,0.676695028044854,0,0.460511024178389,0,3.22260734604821,0.870100163485371,0.0852266274161009,1.15741646340759,0.330569830721956,0.192190067365106,0,0.30347334256665,0.464845549297286,2.51849877464512,0,2.46426864140871,0,0,0.37064843820784,0.572499546967965,0,1.89827654831236,4.5751246541718,0,2.1396949401696,0.95460974377781,0,3.77732160924961,3.56898138656871,2.70968525395079,0.606547444719948,0,0.421258456238981,0.975267478179181,1.21856744815642,1.05650146756755,0.545999645631943,2.82810863907426,0,0,0,0,1.15755106853338,7.21484227251296,0.202910376962704,0,0,1.57752487424457,2.84922218938051,0.35667105148125,0.354761064070598,0,1.64647446479951,0,0,0,0,0,0.470719003883896,0,0,0.443430153536676,0.459446800413919,0.507447609232169,0,0.569647187174163,0.714695326373367,0.411362273086194,1.94541993357815,0.540031437238115,0.79312517629427,0.534120355637366,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.403599414382095,0.851692475380653,0,0,0,0,0.390776190804081,0,0,0,0,0,0,0.879049075631364,0.485442086998054,0,0,1.19372242368845,1.48482340416319,1.53580351049616,0,0,0,0,0,1.39473591775749,0.276283915531148,0,0.511343412510774,0,0,0.0898683511473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| |||
|short_description=p10@FAM198B | |||
}} |
Latest revision as of 10:18, 16 September 2015
Short description: | p10@FAM198B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_10_at_FAM198B_5end |
Coexpression cluster: | NA |
Association with transcript: | 170bp_to_NM_016613, uc003ipp.3_5end |
EntrezGene: | FAM198B |
HGNC: | 25312 |
UniProt: | Q6UWH4Q9NYZ0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
monopoietic cell | 3.98e-13 | 59 |
monocyte | 3.98e-13 | 59 |
monoblast | 3.98e-13 | 59 |
promonocyte | 3.98e-13 | 59 |
multi fate stem cell | 4.56e-13 | 427 |
somatic stem cell | 1.72e-12 | 433 |
macrophage dendritic cell progenitor | 2.03e-12 | 61 |
defensive cell | 2.66e-12 | 48 |
phagocyte | 2.66e-12 | 48 |
stem cell | 9.43e-12 | 441 |
myeloid lineage restricted progenitor cell | 7.53e-11 | 66 |
granulocyte monocyte progenitor cell | 1.45e-10 | 67 |
classical monocyte | 8.20e-10 | 42 |
CD14-positive, CD16-negative classical monocyte | 8.20e-10 | 42 |
myeloid leukocyte | 2.81e-09 | 72 |
fat cell | 2.41e-07 | 15 |
mesenchymal cell | 3.67e-07 | 354 |
connective tissue cell | 5.57e-07 | 361 |
Ontology term | p-value | n |
---|---|---|
mesoderm | 1.49e-20 | 315 |
mesoderm-derived structure | 1.49e-20 | 315 |
presumptive mesoderm | 1.49e-20 | 315 |
lateral plate mesoderm | 3.11e-13 | 203 |
musculoskeletal system | 1.41e-11 | 167 |
somatic layer of lateral plate mesoderm | 1.90e-09 | 8 |
bone marrow | 4.84e-09 | 76 |
amnion | 2.04e-08 | 7 |
embryonic structure | 3.94e-08 | 564 |
omentum | 4.59e-08 | 6 |
peritoneum | 4.59e-08 | 6 |
abdominal cavity | 4.59e-08 | 6 |
visceral peritoneum | 4.59e-08 | 6 |
germ layer | 6.95e-08 | 560 |
germ layer / neural crest | 6.95e-08 | 560 |
embryonic tissue | 6.95e-08 | 560 |
presumptive structure | 6.95e-08 | 560 |
germ layer / neural crest derived structure | 6.95e-08 | 560 |
epiblast (generic) | 6.95e-08 | 560 |
bone element | 8.31e-08 | 82 |
hematopoietic system | 1.47e-07 | 98 |
blood island | 1.47e-07 | 98 |
immune system | 2.69e-07 | 93 |
connective tissue | 3.77e-07 | 371 |
developing anatomical structure | 4.91e-07 | 581 |
skeletal element | 5.69e-07 | 90 |