FFCP PHASE1:Mm9::chr15:97998247..97998304,+: Difference between revisions
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{{FFCP|EntrezGene=239650|HGNC=|MCL_coexpression_id=13|UniProt=Q8BMK5|association_with_transcript=10bp_to_ENSMUST00000031914,NM_177716,uc011zys.1_5end|description=CAGE_peak_1_at_AI836003_5end|id=chr15:97998247..97998304,+|ontology_enrichment_celltype=CL:0000117!9.18e-14!23;CL:0000337!9.18e-14!23;CL:0002319!2.22e-12!43;CL:0000540!3.19e-12!33;CL:0000047!3.19e-12!33;CL:0000031!3.19e-12!33;CL:0000404!3.19e-12!33;CL:0000221!3.44e-12!44;CL:0000133!3.44e-12!44;CL:0000393!2.26e-09!39;CL:0000211!2.26e-09!39;CL:0000055!2.82e-09!50|ontology_enrichment_celltype_v019_2=CL:0000117,3.54e-15,23;CL:0000337,3.54e-15,23;CL:0000540,1.26e-12,33;CL:0000047,1.26e-12,33;CL:0000031,1.26e-12,33;CL:0000404,1.26e-12,33;CL:0002319,3.57e-12,43;CL:0000221,5.47e-12,44;CL:0000133,5.47e-12,44;CL:0000393,3.03e-10,39;CL:0000211,3.03e-10,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!5.99e-29!73;UBERON:0005743!5.99e-29!73;UBERON:0000073!2.08e-28!75;UBERON:0001016!2.08e-28!75;UBERON:0002346!7.60e-25!71;UBERON:0003075!7.60e-25!71;UBERON:0007284!7.60e-25!71;UBERON:0001049!2.79e-24!52;UBERON:0005068!2.79e-24!52;UBERON:0006241!2.79e-24!52;UBERON:0007135!2.79e-24!52;UBERON:0000955!2.13e-22!50;UBERON:0006238!2.13e-22!50;UBERON:0002616!6.92e-22!49;UBERON:0004121!1.14e-21!102;UBERON:0000924!1.14e-21!102;UBERON:0006601!1.14e-21!102;UBERON:0000033!1.56e-20!63;UBERON:0003056!1.21e-18!49;UBERON:0003080!1.92e-18!40;UBERON:0002020!2.60e-18!34;UBERON:0002780!8.41e-18!39;UBERON:0001890!8.41e-18!39;UBERON:0006240!8.41e-18!39;UBERON:0002791!9.03e-15!29;UBERON:0003528!9.03e-15!29;UBERON:0001893!9.03e-15!29;UBERON:0000956!5.10e-10!21;UBERON:0001869!5.10e-10!21;UBERON:0000203!5.10e-10!21;UBERON:0002619!4.82e-09!17;UBERON:0007811!7.19e-08!86;UBERON:0002021!4.33e-07!10;UBERON:0000411!4.33e-07!10;UBERON:0001950!4.33e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.12e-30,73;UBERON:0001016,1.11e-29,75;UBERON:0000073,6.71e-28,54;UBERON:0002346,1.06e-26,64;UBERON:0003075,1.06e-26,64;UBERON:0007284,1.06e-26,64;UBERON:0001049,2.16e-26,52;UBERON:0005068,2.16e-26,52;UBERON:0006241,2.16e-26,52;UBERON:0007135,2.16e-26,52;UBERON:0004121,6.46e-23,95;UBERON:0000924,6.46e-23,95;UBERON:0006601,6.46e-23,95;UBERON:0000955,3.75e-22,47;UBERON:0006238,3.75e-22,47;UBERON:0002616,1.36e-21,46;UBERON:0003080,2.11e-20,40;UBERON:0002020,2.96e-20,34;UBERON:0010371,3.51e-20,73;UBERON:0003056,3.69e-20,49;UBERON:0002780,1.10e-19,39;UBERON:0001890,1.10e-19,39;UBERON:0006240,1.10e-19,39;UBERON:0003528,2.65e-16,29;UBERON:0002791,2.65e-16,29;UBERON:0001893,2.65e-16,29;UBERON:0010314,3.15e-16,92;UBERON:0000956,5.33e-11,21;UBERON:0001869,5.33e-11,21;UBERON:0000203,5.33e-11,21;UBERON:0002619,6.52e-10,17;UBERON:0002021,9.82e-08,10;UBERON:0000411,9.82e-08,10;UBERON:0001950,9.82e-08,10|phase1_expression=0.960893082628764,4.53668029931169,2.27499619694768,0,0,1.17515490338323,2.10251376535973,0.258246646883153,0.140788722151667,0,0,0,0,0,0,0,0,0,0,0,23.5569913718463,0,0,1.75991665072747,2.06468352960453,2.29692785646008,3.01533397311352,4.09395342103189,0.380046838912748,0.252030129759931,2.21730510655305,0,0,0,0,0.166234645358492,0,0,0,0,0,0,0,2.14024590558481,1.4192770370732,2.56965453026354,0.782391344348039,4.57852828398938,4.17403747195497,3.69416808241138,1.53985063787899,5.75010257459886,0,0,0,0,0,0,98.5281164386241,120.609943274023,114.723484034618,1.0165335962074,0.889294796111139,1.3498495759221,2.96659908770092,4.2628806896766,5.99200221036809,18.4424786554346,6.53244557543409,8.6403800532282,7.57169860864975,105.976515213811,128.324622292887,16.2912762955889,14.3768206527355,22.0612508786405,85.8903871795232,58.2254261668456,73.1167098299719,129.776107126511,115.091455651831,96.8898869235574,74.8210437323701,60.7783618834214,48.1314480496952,144.662635467571,112.331256150492,105.688485782945,1.8931548333296,0.68014404096107,0,0,0,0.539703191637817,0,0,5.47733238513832,2.38602451609281,2.33807404142582,2.82671659608272,1.12674735821344,0,0,0,0.216491041011214,0,0,3.53970027129086,0.517875767294343,2.3750742250372,1.04091196059682,4.26251669636998,3.68984795609694,2.86373017049983,3.76283862834255,1.38233250462643,0.247194967734374,0,0,0.161766849947409,0,0,0,16.9812862266697,7.12118803165747,0.510914110417183,0.599075622529601,0,0.254140454146129,74.2961571447921,33.3975440057597,52.9004822395159,38.9366477230699,27.105838477015,66.2843862144997,33.0972176658226,0.81471491080253,0.995255764880744,0.505445516867349,3.57751155007006,0.780722657776222,4.13823787980251,5.22180176435513,4.37043971723574,2.9255694635071,2.69038812598185,3.84177070694888,9.8307280880826,0,0.756424320671277,0.527853372491847,0.43839146485515,0,0,0.205782136407943,0.59710280045548,0.702213187313235,0,0,1.24275463521301,0.469052119962192,1.62055855314913,2.13070262026689,1.18058539048442,0.925602677324269,0.697601834251224,0.804820204198858,0.467061369468678,0.329119699826961,0.32833492815819,0.648550476366846,1.16959989940266,0.878200461164203,0.671032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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=239650 | |||
|HGNC= | |||
|MCL_coexpression_id=13 | |||
|TSSclassifier=NA | |||
|UniProt=Q8BMK5 | |||
|association_with_transcript=10bp_to_ENSMUST00000031914,NM_177716,uc011zys.1_5end | |||
|cluster_id=chr15:97998247..97998304,+ | |||
|description=CAGE_peak_1_at_AI836003_5end | |||
|id=chr15:97998247..97998304,+ | |||
|ontology_enrichment_celltype=CL:0000117!9.18e-14!23;CL:0000337!9.18e-14!23;CL:0002319!2.22e-12!43;CL:0000540!3.19e-12!33;CL:0000047!3.19e-12!33;CL:0000031!3.19e-12!33;CL:0000404!3.19e-12!33;CL:0000221!3.44e-12!44;CL:0000133!3.44e-12!44;CL:0000393!2.26e-09!39;CL:0000211!2.26e-09!39;CL:0000055!2.82e-09!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,3.54e-15,23;CL:0000337,3.54e-15,23;CL:0000540,1.26e-12,33;CL:0000047,1.26e-12,33;CL:0000031,1.26e-12,33;CL:0000404,1.26e-12,33;CL:0002319,3.57e-12,43;CL:0000221,5.47e-12,44;CL:0000133,5.47e-12,44;CL:0000393,3.03e-10,39;CL:0000211,3.03e-10,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!5.99e-29!73;UBERON:0005743!5.99e-29!73;UBERON:0000073!2.08e-28!75;UBERON:0001016!2.08e-28!75;UBERON:0002346!7.60e-25!71;UBERON:0003075!7.60e-25!71;UBERON:0007284!7.60e-25!71;UBERON:0001049!2.79e-24!52;UBERON:0005068!2.79e-24!52;UBERON:0006241!2.79e-24!52;UBERON:0007135!2.79e-24!52;UBERON:0000955!2.13e-22!50;UBERON:0006238!2.13e-22!50;UBERON:0002616!6.92e-22!49;UBERON:0004121!1.14e-21!102;UBERON:0000924!1.14e-21!102;UBERON:0006601!1.14e-21!102;UBERON:0000033!1.56e-20!63;UBERON:0003056!1.21e-18!49;UBERON:0003080!1.92e-18!40;UBERON:0002020!2.60e-18!34;UBERON:0002780!8.41e-18!39;UBERON:0001890!8.41e-18!39;UBERON:0006240!8.41e-18!39;UBERON:0002791!9.03e-15!29;UBERON:0003528!9.03e-15!29;UBERON:0001893!9.03e-15!29;UBERON:0000956!5.10e-10!21;UBERON:0001869!5.10e-10!21;UBERON:0000203!5.10e-10!21;UBERON:0002619!4.82e-09!17;UBERON:0007811!7.19e-08!86;UBERON:0002021!4.33e-07!10;UBERON:0000411!4.33e-07!10;UBERON:0001950!4.33e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.12e-30,73;UBERON:0001016,1.11e-29,75;UBERON:0000073,6.71e-28,54;UBERON:0002346,1.06e-26,64;UBERON:0003075,1.06e-26,64;UBERON:0007284,1.06e-26,64;UBERON:0001049,2.16e-26,52;UBERON:0005068,2.16e-26,52;UBERON:0006241,2.16e-26,52;UBERON:0007135,2.16e-26,52;UBERON:0004121,6.46e-23,95;UBERON:0000924,6.46e-23,95;UBERON:0006601,6.46e-23,95;UBERON:0000955,3.75e-22,47;UBERON:0006238,3.75e-22,47;UBERON:0002616,1.36e-21,46;UBERON:0003080,2.11e-20,40;UBERON:0002020,2.96e-20,34;UBERON:0010371,3.51e-20,73;UBERON:0003056,3.69e-20,49;UBERON:0002780,1.10e-19,39;UBERON:0001890,1.10e-19,39;UBERON:0006240,1.10e-19,39;UBERON:0003528,2.65e-16,29;UBERON:0002791,2.65e-16,29;UBERON:0001893,2.65e-16,29;UBERON:0010314,3.15e-16,92;UBERON:0000956,5.33e-11,21;UBERON:0001869,5.33e-11,21;UBERON:0000203,5.33e-11,21;UBERON:0002619,6.52e-10,17;UBERON:0002021,9.82e-08,10;UBERON:0000411,9.82e-08,10;UBERON:0001950,9.82e-08,10 | |||
|phase1_expression=0.960893082628764,4.53668029931169,2.27499619694768,0,0,1.17515490338323,2.10251376535973,0.258246646883153,0.140788722151667,0,0,0,0,0,0,0,0,0,0,0,23.5569913718463,0,0,1.75991665072747,2.06468352960453,2.29692785646008,3.01533397311352,4.09395342103189,0.380046838912748,0.252030129759931,2.21730510655305,0,0,0,0,0.166234645358492,0,0,0,0,0,0,0,2.14024590558481,1.4192770370732,2.56965453026354,0.782391344348039,4.57852828398938,4.17403747195497,3.69416808241138,1.53985063787899,5.75010257459886,0,0,0,0,0,0,98.5281164386241,120.609943274023,114.723484034618,1.0165335962074,0.889294796111139,1.3498495759221,2.96659908770092,4.2628806896766,5.99200221036809,18.4424786554346,6.53244557543409,8.6403800532282,7.57169860864975,105.976515213811,128.324622292887,16.2912762955889,14.3768206527355,22.0612508786405,85.8903871795232,58.2254261668456,73.1167098299719,129.776107126511,115.091455651831,96.8898869235574,74.8210437323701,60.7783618834214,48.1314480496952,144.662635467571,112.331256150492,105.688485782945,1.8931548333296,0.68014404096107,0,0,0,0.539703191637817,0,0,5.47733238513832,2.38602451609281,2.33807404142582,2.82671659608272,1.12674735821344,0,0,0,0.216491041011214,0,0,3.53970027129086,0.517875767294343,2.3750742250372,1.04091196059682,4.26251669636998,3.68984795609694,2.86373017049983,3.76283862834255,1.38233250462643,0.247194967734374,0,0,0.161766849947409,0,0,0,16.9812862266697,7.12118803165747,0.510914110417183,0.599075622529601,0,0.254140454146129,74.2961571447921,33.3975440057597,52.9004822395159,38.9366477230699,27.105838477015,66.2843862144997,33.0972176658226,0.81471491080253,0.995255764880744,0.505445516867349,3.57751155007006,0.780722657776222,4.13823787980251,5.22180176435513,4.37043971723574,2.9255694635071,2.69038812598185,3.84177070694888,9.8307280880826,0,0.756424320671277,0.527853372491847,0.43839146485515,0,0,0.205782136407943,0.59710280045548,0.702213187313235,0,0,1.24275463521301,0.469052119962192,1.62055855314913,2.13070262026689,1.18058539048442,0.925602677324269,0.697601834251224,0.804820204198858,0.467061369468678,0.329119699826961,0.32833492815819,0.648550476366846,1.16959989940266,0.878200461164203,0.671032093801859,23.5524742391823,29.1220053033375,0,1.32225283331772,0.853153002140936,1.16118335930219,0.77320476793256,0.80673409849337,1.11189021922435,1.33157938278791,0.474529061544512,1.64698954724011,0.754005626400808,0.596869416123452,1.55971269695296,0.898819408654221,1.08069024937347,0.398282546508734,0.189667900953082,1.02823661348756,2.25415471346161,1.4255592949172,0.775809948670503,1.05203729835478,0.442655759869801,0.147610147979602,0.156998727841375,0.246794327843601,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.51031061316549,0.37898282354097,0,0.169745085775188,0,0,0,0.195133647857799,0,0.664394068946325,0.478364305972461,1.96635977658886,2.93564469172023,4.33947175744535,0,0,0,0,71.4450125445674,51.338718727385,0.819674726883377,0.252470927204373,4.41711507182759,4.29482618726302,3.66219776145758,1.43381278771531,1.11399337041197,0.566153061577665,2.83367491172426,2.92255857911312,4.34816555741176,24.7417413644791,2.83880170416537,0.712262414669021,0.488660878060728,16.9919226661712,1.32745138339963,2.6705869977048,0,1.50884063804718,2.65771703592696,3.3817866273832,0.516856586336442,3.27180356529755,2.13898427030833,0.632073515871632,0,0,28.2564872775644,3.42116078659489,5.04498866752743,4.50107773566344,7.27094957933322,8.20496560969525,12.5057255657612,30.1420299623453,3.98941903708308,0.42366414172764,0.661585194164886,0.16488625294148,0,0,0,0,0.582961673259701,66.196832817752,0.512612642393558,0.206386867963223,0,0,0.136694227721025,0.686334519619568,1.18984900995699,0.559805809294632,0.552799895217695,0.954670618015114,0.158167996790568,1.82987520414164,1.40406943068342,1.25452977608681,0.436725127492355,0.944050424693745,1.1571483801547,0.785267825952089,1.16653475962614,0,100.337343085786,0,0,0.194451188344048,0.387479470433193,1.01373675294467,0.234714477291508,0.5208175393758,0.734015410979976,11.3544536788223,66.5349314455669,0,0.608175645870493,0.102710957164827,0,0.179026695667481,0,0.120195449519969,0.147689527174577,0.100966449948148,0.0762068066549998,0.100826185136841,0.292373642219257,0.0962118416403295,0.116876902181569,0.226730383615211,19.5347638969177,8.07424709485281,31.0586540273545,4.82973985080476,3.75364950902364,6.41030684935428,0.214368379079066,0.501572104035363,103.349587198923,105.874804396651,91.6632821503035,74.240574772473,51.3811889827982,55.1437545094481,56.7018900194717,49.08501115144,41.6891016265468,61.0957167867148,5.08558003162466,8.37952234142165,10.2440163452481,10.4535888339366,16.1402135223546,22.4289080309017,10.0011027510727,13.3922787205281,14.1204452220399,10.1078884705519,15.2087579934144,11.1289541417785,11.143339388916,11.4605022804716,12.4634967633681,10.9547548995107,12.5155072020444,9.45255180272155,7.00546031365621,12.5119082114238,12.343293085875,11.0034999818789,11.4449371174714,10.3195955808953,1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| |||
|short_description=p1@AI836003 | |||
}} |
Latest revision as of 12:57, 1 October 2015
Short description: | p1@AI836003 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_AI836003_5end |
Coexpression cluster: | MCL_coexpression_mm9:13 |
Association with transcript: | 10bp_to_ENSMUST00000031914, NM_177716, uc011zys.1_5end |
EntrezGene: | AI836003 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 3.54e-15 | 23 |
neuroblast (sensu Vertebrata) | 3.54e-15 | 23 |
neuron | 1.26e-12 | 33 |
neuronal stem cell | 1.26e-12 | 33 |
neuroblast | 1.26e-12 | 33 |
electrically signaling cell | 1.26e-12 | 33 |
neural cell | 3.57e-12 | 43 |
ectodermal cell | 5.47e-12 | 44 |
neurectodermal cell | 5.47e-12 | 44 |
electrically responsive cell | 3.03e-10 | 39 |
electrically active cell | 3.03e-10 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.12e-30 | 73 |
nervous system | 1.11e-29 | 75 |
regional part of nervous system | 6.71e-28 | 54 |
neurectoderm | 1.06e-26 | 64 |
neural plate | 1.06e-26 | 64 |
presumptive neural plate | 1.06e-26 | 64 |
neural tube | 2.16e-26 | 52 |
neural rod | 2.16e-26 | 52 |
future spinal cord | 2.16e-26 | 52 |
neural keel | 2.16e-26 | 52 |
ectoderm-derived structure | 6.46e-23 | 95 |
ectoderm | 6.46e-23 | 95 |
presumptive ectoderm | 6.46e-23 | 95 |
brain | 3.75e-22 | 47 |
future brain | 3.75e-22 | 47 |
regional part of brain | 1.36e-21 | 46 |
anterior neural tube | 2.11e-20 | 40 |
gray matter | 2.96e-20 | 34 |
ecto-epithelium | 3.51e-20 | 73 |
pre-chordal neural plate | 3.69e-20 | 49 |
regional part of forebrain | 1.10e-19 | 39 |
forebrain | 1.10e-19 | 39 |
future forebrain | 1.10e-19 | 39 |
brain grey matter | 2.65e-16 | 29 |
regional part of telencephalon | 2.65e-16 | 29 |
telencephalon | 2.65e-16 | 29 |
structure with developmental contribution from neural crest | 3.15e-16 | 92 |
cerebral cortex | 5.33e-11 | 21 |
cerebral hemisphere | 5.33e-11 | 21 |
pallium | 5.33e-11 | 21 |
regional part of cerebral cortex | 6.52e-10 | 17 |
occipital lobe | 9.82e-08 | 10 |
visual cortex | 9.82e-08 | 10 |
neocortex | 9.82e-08 | 10 |