FFCP PHASE1:Mm9::chr1:160292461..160292542,+: Difference between revisions
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{{FFCP|EntrezGene=11899|HGNC=|MCL_coexpression_id=13|UniProt=G5E8A1,Q3TPU9,Q3UHD7,Q61137|association_with_transcript=0bp_to_ENSMUST00000046110,ENSMUST00000170718,uc007ddr.2,uc007dds.2,uc007ddt.2,uc007ddu.2_5end|description=CAGE_peak_1_at_Astn1_5end|id=chr1:160292461..160292542,+|ontology_enrichment_celltype=CL:0000540!4.59e-19!33;CL:0000047!4.59e-19!33;CL:0000031!4.59e-19!33;CL:0000404!4.59e-19!33;CL:0002319!5.02e-18!43;CL:0000221!9.42e-18!44;CL:0000133!9.42e-18!44;CL:0000117!2.63e-15!23;CL:0000337!2.63e-15!23;CL:0000393!5.11e-13!39;CL:0000211!5.11e-13!39;CL:0000055!2.89e-12!50|ontology_enrichment_celltype_v019_2=CL:0000540,4.78e-21,33;CL:0000047,4.78e-21,33;CL:0000031,4.78e-21,33;CL:0000404,4.78e-21,33;CL:0002319,3.59e-19,43;CL:0000221,7.02e-19,44;CL:0000133,7.02e-19,44;CL:0000117,7.33e-17,23;CL:0000337,7.33e-17,23;CL:0000393,4.74e-15,39;CL:0000211,4.74e-15,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!2.49e-35!73;UBERON:0005743!2.49e-35!73;UBERON:0000073!3.35e-34!75;UBERON:0001016!3.35e-34!75;UBERON:0004121!9.01e-31!102;UBERON:0000924!9.01e-31!102;UBERON:0006601!9.01e-31!102;UBERON:0002346!1.69e-30!71;UBERON:0003075!1.69e-30!71;UBERON:0007284!1.69e-30!71;UBERON:0000033!3.56e-25!63;UBERON:0001049!1.16e-24!52;UBERON:0005068!1.16e-24!52;UBERON:0006241!1.16e-24!52;UBERON:0007135!1.16e-24!52;UBERON:0000955!1.88e-23!50;UBERON:0006238!1.88e-23!50;UBERON:0002616!1.10e-22!49;UBERON:0003056!1.33e-22!49;UBERON:0002020!7.31e-20!34;UBERON:0003080!3.74e-19!40;UBERON:0002780!1.51e-18!39;UBERON:0001890!1.51e-18!39;UBERON:0006240!1.51e-18!39;UBERON:0002791!1.14e-16!29;UBERON:0003528!1.14e-16!29;UBERON:0001893!1.14e-16!29;UBERON:0000153!5.96e-13!94;UBERON:0007811!5.07e-12!86;UBERON:0000956!5.61e-12!21;UBERON:0001869!5.61e-12!21;UBERON:0000203!5.61e-12!21;UBERON:0002619!1.37e-09!17;UBERON:0000468!1.68e-08!333;UBERON:0002021!3.94e-07!10;UBERON:0000411!3.94e-07!10;UBERON:0001950!3.94e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0001017,3.59e-39,73;UBERON:0001016,4.16e-37,75;UBERON:0002346,3.82e-33,64;UBERON:0003075,3.82e-33,64;UBERON:0007284,3.82e-33,64;UBERON:0004121,7.75e-33,95;UBERON:0000924,7.75e-33,95;UBERON:0006601,7.75e-33,95;UBERON:0000073,7.50e-29,54;UBERON:0001049,2.77e-27,52;UBERON:0005068,2.77e-27,52;UBERON:0006241,2.77e-27,52;UBERON:0007135,2.77e-27,52;UBERON:0010371,1.51e-26,73;UBERON:0003056,5.47e-25,49;UBERON:0010314,9.80e-25,92;UBERON:0000955,7.18e-24,47;UBERON:0006238,7.18e-24,47;UBERON:0002616,4.97e-23,46;UBERON:0002020,6.18e-22,34;UBERON:0003080,3.81e-21,40;UBERON:0002780,1.80e-20,39;UBERON:0001890,1.80e-20,39;UBERON:0006240,1.80e-20,39;UBERON:0003528,2.21e-18,29;UBERON:0002791,2.21e-18,29;UBERON:0001893,2.21e-18,29;UBERON:0000956,3.73e-13,21;UBERON:0001869,3.73e-13,21;UBERON:0000203,3.73e-13,21;UBERON:0002619,1.70e-10,17;UBERON:0002021,9.17e-08,10;UBERON:0000411,9.17e-08,10;UBERON:0001950,9.17e-08,10|phase1_expression=5.12476310735341,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.07911256435163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.56478268869608,12.209408757305,2.85592037554813,1.94429899074283,4.61955191363696,8.62515386189829,0,0,0,0.257259436035947,0,0,69.7991789965612,80.935619828621,62.1154775436056,1.0165335962074,0,0,0.988866362566974,0,5.69240209984969,14.6002956022191,48.9414970096015,54.542399086003,44.3785668451416,39.9911378165325,37.3267834208227,47.5264300954022,48.2102719221729,56.0723459832113,42.9451935897616,45.2013176821564,49.9221233082791,78.3404549117352,69.3476338506265,72.4069585073896,26.8015679041326,47.8348218526928,44.6170883508286,82.4960039326269,63.3553979556008,62.0710154598251,0.151452386666368,0.755715601067855,0.579728977403356,0,0,0,0,0,1.40444420131752,0,0,0,1.12674735821344,0,0,0,0,0,0,1.1418387971906,8.80388804400384,6.67989625791711,7.80683970447611,8.8294988710521,5.5347719341454,6.78251882486802,5.29149182110672,1.38233250462643,0,0.289198713839823,0,0.323533699894818,0.662524555381181,0,0,14.9318206475889,14.8707161837553,0.510914110417183,0,0,0,47.0342607731143,34.7700458142156,43.0994427747125,57.0143770230667,47.5630750634415,48.2068263378179,41.533763345346,1.12023300235348,0.124406970610093,0.252722758433675,4.20883711772948,15.2240918266363,13.5642241615749,26.6491952111917,24.866294942893,35.6511255552958,36.7686377217519,34.9507432607789,13.9699820199068,6.68260778091811,13.9938499324186,13.1963343122962,4.3839146485515,2.78047249225598,0.696504333044333,0.61734640922383,3.78165106955137,0,0,0,5.17814431338755,5.8631514995274,2.16074473753218,0.946978942340841,2.36117078096885,1.23413690309903,0.697601834251224,0.804820204198858,0.700592054203017,0.822799249567402,2.13417703302824,1.70244500046297,0.584799949701329,0.878200461164203,1.07365135008297,45.2123389412874,57.7294875447786,0,0.528901133327089,5.54549451391608,5.80591679651096,4.76809606891745,2.8235693447268,2.44615848229357,0.951128130562796,0.474529061544512,3.29397909448022,2.01068167040216,1.98956472041151,0.58489226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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=11899 | |||
|HGNC= | |||
|MCL_coexpression_id=13 | |||
|TSSclassifier=NA | |||
|UniProt=G5E8A1,Q3TPU9,Q3UHD7,Q61137 | |||
|association_with_transcript=0bp_to_ENSMUST00000046110,ENSMUST00000170718,uc007ddr.2,uc007dds.2,uc007ddt.2,uc007ddu.2_5end | |||
|cluster_id=chr1:160292461..160292542,+ | |||
|description=CAGE_peak_1_at_Astn1_5end | |||
|id=chr1:160292461..160292542,+ | |||
|ontology_enrichment_celltype=CL:0000540!4.59e-19!33;CL:0000047!4.59e-19!33;CL:0000031!4.59e-19!33;CL:0000404!4.59e-19!33;CL:0002319!5.02e-18!43;CL:0000221!9.42e-18!44;CL:0000133!9.42e-18!44;CL:0000117!2.63e-15!23;CL:0000337!2.63e-15!23;CL:0000393!5.11e-13!39;CL:0000211!5.11e-13!39;CL:0000055!2.89e-12!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,4.78e-21,33;CL:0000047,4.78e-21,33;CL:0000031,4.78e-21,33;CL:0000404,4.78e-21,33;CL:0002319,3.59e-19,43;CL:0000221,7.02e-19,44;CL:0000133,7.02e-19,44;CL:0000117,7.33e-17,23;CL:0000337,7.33e-17,23;CL:0000393,4.74e-15,39;CL:0000211,4.74e-15,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.49e-35!73;UBERON:0005743!2.49e-35!73;UBERON:0000073!3.35e-34!75;UBERON:0001016!3.35e-34!75;UBERON:0004121!9.01e-31!102;UBERON:0000924!9.01e-31!102;UBERON:0006601!9.01e-31!102;UBERON:0002346!1.69e-30!71;UBERON:0003075!1.69e-30!71;UBERON:0007284!1.69e-30!71;UBERON:0000033!3.56e-25!63;UBERON:0001049!1.16e-24!52;UBERON:0005068!1.16e-24!52;UBERON:0006241!1.16e-24!52;UBERON:0007135!1.16e-24!52;UBERON:0000955!1.88e-23!50;UBERON:0006238!1.88e-23!50;UBERON:0002616!1.10e-22!49;UBERON:0003056!1.33e-22!49;UBERON:0002020!7.31e-20!34;UBERON:0003080!3.74e-19!40;UBERON:0002780!1.51e-18!39;UBERON:0001890!1.51e-18!39;UBERON:0006240!1.51e-18!39;UBERON:0002791!1.14e-16!29;UBERON:0003528!1.14e-16!29;UBERON:0001893!1.14e-16!29;UBERON:0000153!5.96e-13!94;UBERON:0007811!5.07e-12!86;UBERON:0000956!5.61e-12!21;UBERON:0001869!5.61e-12!21;UBERON:0000203!5.61e-12!21;UBERON:0002619!1.37e-09!17;UBERON:0000468!1.68e-08!333;UBERON:0002021!3.94e-07!10;UBERON:0000411!3.94e-07!10;UBERON:0001950!3.94e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,3.59e-39,73;UBERON:0001016,4.16e-37,75;UBERON:0002346,3.82e-33,64;UBERON:0003075,3.82e-33,64;UBERON:0007284,3.82e-33,64;UBERON:0004121,7.75e-33,95;UBERON:0000924,7.75e-33,95;UBERON:0006601,7.75e-33,95;UBERON:0000073,7.50e-29,54;UBERON:0001049,2.77e-27,52;UBERON:0005068,2.77e-27,52;UBERON:0006241,2.77e-27,52;UBERON:0007135,2.77e-27,52;UBERON:0010371,1.51e-26,73;UBERON:0003056,5.47e-25,49;UBERON:0010314,9.80e-25,92;UBERON:0000955,7.18e-24,47;UBERON:0006238,7.18e-24,47;UBERON:0002616,4.97e-23,46;UBERON:0002020,6.18e-22,34;UBERON:0003080,3.81e-21,40;UBERON:0002780,1.80e-20,39;UBERON:0001890,1.80e-20,39;UBERON:0006240,1.80e-20,39;UBERON:0003528,2.21e-18,29;UBERON:0002791,2.21e-18,29;UBERON:0001893,2.21e-18,29;UBERON:0000956,3.73e-13,21;UBERON:0001869,3.73e-13,21;UBERON:0000203,3.73e-13,21;UBERON:0002619,1.70e-10,17;UBERON:0002021,9.17e-08,10;UBERON:0000411,9.17e-08,10;UBERON:0001950,9.17e-08,10 | |||
|phase1_expression=5.12476310735341,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.07911256435163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.56478268869608,12.209408757305,2.85592037554813,1.94429899074283,4.61955191363696,8.62515386189829,0,0,0,0.257259436035947,0,0,69.7991789965612,80.935619828621,62.1154775436056,1.0165335962074,0,0,0.988866362566974,0,5.69240209984969,14.6002956022191,48.9414970096015,54.542399086003,44.3785668451416,39.9911378165325,37.3267834208227,47.5264300954022,48.2102719221729,56.0723459832113,42.9451935897616,45.2013176821564,49.9221233082791,78.3404549117352,69.3476338506265,72.4069585073896,26.8015679041326,47.8348218526928,44.6170883508286,82.4960039326269,63.3553979556008,62.0710154598251,0.151452386666368,0.755715601067855,0.579728977403356,0,0,0,0,0,1.40444420131752,0,0,0,1.12674735821344,0,0,0,0,0,0,1.1418387971906,8.80388804400384,6.67989625791711,7.80683970447611,8.8294988710521,5.5347719341454,6.78251882486802,5.29149182110672,1.38233250462643,0,0.289198713839823,0,0.323533699894818,0.662524555381181,0,0,14.9318206475889,14.8707161837553,0.510914110417183,0,0,0,47.0342607731143,34.7700458142156,43.0994427747125,57.0143770230667,47.5630750634415,48.2068263378179,41.533763345346,1.12023300235348,0.124406970610093,0.252722758433675,4.20883711772948,15.2240918266363,13.5642241615749,26.6491952111917,24.866294942893,35.6511255552958,36.7686377217519,34.9507432607789,13.9699820199068,6.68260778091811,13.9938499324186,13.1963343122962,4.3839146485515,2.78047249225598,0.696504333044333,0.61734640922383,3.78165106955137,0,0,0,5.17814431338755,5.8631514995274,2.16074473753218,0.946978942340841,2.36117078096885,1.23413690309903,0.697601834251224,0.804820204198858,0.700592054203017,0.822799249567402,2.13417703302824,1.70244500046297,0.584799949701329,0.878200461164203,1.07365135008297,45.2123389412874,57.7294875447786,0,0.528901133327089,5.54549451391608,5.80591679651096,4.76809606891745,2.8235693447268,2.44615848229357,0.951128130562796,0.474529061544512,3.29397909448022,2.01068167040216,1.98956472041151,0.58489226135736,0,1.51296634912286,0.796565093017469,2.27601481143698,4.34144347916969,1.1270773567308,2.03651327845314,0.775809948670503,1.40271639780637,1.3279672796094,0.147610147979602,0.470996183524124,0.246794327843601,0,1.66845105716094,1.37591296579242,0.449724224769707,0.202860121388503,0.482354319504834,0.25462585178142,0,0,0,2.87536413054709,0.744281895337007,0.936113019343682,0,0.179397413521912,0,0,4.54779388249163,1.14075483509418,1.01847051465113,0.704070744865506,0,0,0,0.157635144106191,0.44292937929755,0.478364305972461,0.327726629431476,0,0,0,0,0,0.275936746304732,24.5642402681322,24.4972424977705,0,0,22.085575359138,24.5976408906882,37.483671205507,21.9851294116348,27.6270355862169,32.5538010407157,23.4790206971439,37.1164939547366,41.9005044623315,72.6186175113284,4.11626247103979,3.02711526234334,1.62886959353576,3.13443233647817,0,1.69946445308487,0,0.565815239267694,1.18120757152309,0.614870295887855,0.516856586336442,0.363533729477506,0,0.948110273807448,0,0,5.44703369206061,15.1251318986301,8.92574918101006,7.50179622610573,6.7389288784064,6.77801506887868,5.43011767986999,7.91608867697958,0,0,0.441056796109924,0,0,0.180938774784468,0,0,0.582961673259701,27.6283699995659,0.170870880797853,0.619160603889667,0,0,0,0,0,0,0,0,7.27572785236611,5.89626454667861,3.24016022465404,2.92723614420256,1.52853794622324,1.88810084938749,2.39695021603474,0.785267825952089,1.68499465279331,0,0,1.19613236835183,0.496375471371293,0.777804753376191,0.387479470433193,0.337912250981556,0.58678619322877,0,0.209718688851422,0.241584120826006,0,0.632022241256357,1.21635129174099,0.410843828659309,0,0.179026695667481,0.39736270956253,0,0.147689527174577,0.302899349844443,0.228620419965,0,0.38983152295901,0,0.116876902181569,0.226730383615211,0,0,0,1.35232715822533,0.750729901804728,0.183151624267265,0.214368379079066,0,58.7341916321749,53.3977274348325,61.8727154514548,59.6330542732596,40.4198686664679,45.323633843382,53.3267775183127,42.7805143063009,43.5016712624836,42.9741058754011,4.56664329370377,38.306387846499,17.2440941811676,14.8295097411659,8.80375283037526,7.90527086335061,12.2235700290888,12.7741735488114,12.8367683836726,10.6132828940795,9.88569269571935,13.7697229211836,10.8624148665064,11.9727034997106,13.0952869218798,11.4310485907938,11.8202012463753,9.64546102318525,14.0109206273124,13.8366984926333,9.25746981440622,11.3584515941976,12.1602456873134,10.61028841416,12.6106569756543,13.7921810863433,12.8049581010941,10.2597187460759,9.91370031074791,9.53941861818155,10.4398815949273,9.65343927280522,6.95692773388472,8.83139994760006,9.25951732709479,24.4814366379187,8.18760629558929,7.30561583764214,3.82576664137687,3.52946270591225,1.15933917810211 | |||
|short_description=p1@Astn1 | |||
}} |
Latest revision as of 15:17, 26 September 2015
Short description: | p1@Astn1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Astn1_5end |
Coexpression cluster: | MCL_coexpression_mm9:13 |
Association with transcript: | 0bp_to_ENSMUST00000046110, ENSMUST00000170718, uc007ddr.2, uc007dds.2, uc007ddt.2, uc007ddu.2_5end |
EntrezGene: | Astn1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 4.78e-21 | 33 |
neuronal stem cell | 4.78e-21 | 33 |
neuroblast | 4.78e-21 | 33 |
electrically signaling cell | 4.78e-21 | 33 |
neural cell | 3.59e-19 | 43 |
ectodermal cell | 7.02e-19 | 44 |
neurectodermal cell | 7.02e-19 | 44 |
CNS neuron (sensu Vertebrata) | 7.33e-17 | 23 |
neuroblast (sensu Vertebrata) | 7.33e-17 | 23 |
electrically responsive cell | 4.74e-15 | 39 |
electrically active cell | 4.74e-15 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 3.59e-39 | 73 |
nervous system | 4.16e-37 | 75 |
neurectoderm | 3.82e-33 | 64 |
neural plate | 3.82e-33 | 64 |
presumptive neural plate | 3.82e-33 | 64 |
ectoderm-derived structure | 7.75e-33 | 95 |
ectoderm | 7.75e-33 | 95 |
presumptive ectoderm | 7.75e-33 | 95 |
regional part of nervous system | 7.50e-29 | 54 |
neural tube | 2.77e-27 | 52 |
neural rod | 2.77e-27 | 52 |
future spinal cord | 2.77e-27 | 52 |
neural keel | 2.77e-27 | 52 |
ecto-epithelium | 1.51e-26 | 73 |
pre-chordal neural plate | 5.47e-25 | 49 |
structure with developmental contribution from neural crest | 9.80e-25 | 92 |
brain | 7.18e-24 | 47 |
future brain | 7.18e-24 | 47 |
regional part of brain | 4.97e-23 | 46 |
gray matter | 6.18e-22 | 34 |
anterior neural tube | 3.81e-21 | 40 |
regional part of forebrain | 1.80e-20 | 39 |
forebrain | 1.80e-20 | 39 |
future forebrain | 1.80e-20 | 39 |
brain grey matter | 2.21e-18 | 29 |
regional part of telencephalon | 2.21e-18 | 29 |
telencephalon | 2.21e-18 | 29 |
cerebral cortex | 3.73e-13 | 21 |
cerebral hemisphere | 3.73e-13 | 21 |
pallium | 3.73e-13 | 21 |
regional part of cerebral cortex | 1.70e-10 | 17 |
occipital lobe | 9.17e-08 | 10 |
visual cortex | 9.17e-08 | 10 |
neocortex | 9.17e-08 | 10 |