FFCP PHASE1:Mm9::chr2:28368598..28368624,+: Difference between revisions
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{{FFCP|EntrezGene=19730|HGNC=|MCL_coexpression_id=22|UniProt=B0R018|association_with_transcript=-20bp_to_ENSMUST00000135803_5end|description=CAGE_peak_4_at_Ralgds_5end|id=chr2:28368598..28368624,+|ontology_enrichment_celltype=CL:0000221!4.79e-15!44;CL:0000133!4.79e-15!44;CL:0002319!4.97e-15!43;CL:0000540!2.98e-13!33;CL:0000047!2.98e-13!33;CL:0000031!2.98e-13!33;CL:0000404!2.98e-13!33;CL:0000117!9.34e-12!23;CL:0000337!9.34e-12!23;CL:0000055!1.68e-11!50;CL:0000393!2.73e-10!39;CL:0000211!2.73e-10!39|ontology_enrichment_celltype_v019_2=CL:0002319,4.38e-18,43;CL:0000540,1.09e-17,33;CL:0000047,1.09e-17,33;CL:0000031,1.09e-17,33;CL:0000404,1.09e-17,33;CL:0000221,2.45e-17,44;CL:0000133,2.45e-17,44;CL:0000117,8.11e-16,23;CL:0000337,8.11e-16,23;CL:0000393,7.40e-14,39;CL:0000211,7.40e-14,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!2.44e-23!75;UBERON:0001016!2.44e-23!75;UBERON:0001017!7.47e-23!73;UBERON:0005743!7.47e-23!73;UBERON:0004121!1.66e-22!102;UBERON:0000924!1.66e-22!102;UBERON:0006601!1.66e-22!102;UBERON:0002346!2.69e-18!71;UBERON:0003075!2.69e-18!71;UBERON:0007284!2.69e-18!71;UBERON:0002020!3.88e-18!34;UBERON:0001049!4.50e-17!52;UBERON:0005068!4.50e-17!52;UBERON:0006241!4.50e-17!52;UBERON:0007135!4.50e-17!52;UBERON:0003056!4.57e-16!49;UBERON:0000033!2.28e-15!63;UBERON:0002791!8.69e-15!29;UBERON:0003528!8.69e-15!29;UBERON:0001893!8.69e-15!29;UBERON:0003080!3.42e-14!40;UBERON:0002780!3.59e-14!39;UBERON:0001890!3.59e-14!39;UBERON:0006240!3.59e-14!39;UBERON:0000955!6.15e-14!50;UBERON:0006238!6.15e-14!50;UBERON:0002616!1.54e-13!49;UBERON:0000956!3.73e-11!21;UBERON:0001869!3.73e-11!21;UBERON:0000203!3.73e-11!21;UBERON:0002619!4.22e-09!17;UBERON:0000153!5.06e-07!94|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.12e-25,73;UBERON:0001016,1.19e-25,75;UBERON:0002020,3.78e-23,34;UBERON:0004121,5.90e-22,95;UBERON:0000924,5.90e-22,95;UBERON:0006601,5.90e-22,95;UBERON:0003056,1.97e-19,49;UBERON:0002346,3.59e-19,64;UBERON:0003075,3.59e-19,64;UBERON:0007284,3.59e-19,64;UBERON:0003528,1.13e-18,29;UBERON:0002791,1.13e-18,29;UBERON:0001893,1.13e-18,29;UBERON:0000073,2.38e-18,54;UBERON:0001049,1.09e-17,52;UBERON:0005068,1.09e-17,52;UBERON:0006241,1.09e-17,52;UBERON:0007135,1.09e-17,52;UBERON:0003080,1.53e-17,40;UBERON:0002780,1.67e-17,39;UBERON:0001890,1.67e-17,39;UBERON:0006240,1.67e-17,39;UBERON:0010371,2.80e-15,73;UBERON:0000955,6.30e-15,47;UBERON:0006238,6.30e-15,47;UBERON:0002616,2.03e-14,46;UBERON:0000956,8.34e-14,21;UBERON:0001869,8.34e-14,21;UBERON:0000203,8.34e-14,21;UBERON:0010314,2.57e-11,92;UBERON:0002619,4.57e-11,17;UBERON:0002021,6.79e-08,10;UBERON:0000411,6.79e-08,10;UBERON:0001950,6.79e-08,10|phase1_expression=1.44133962394315,0,0,0,0,0,0,0.258246646883153,0.281577444303333,0,0.171217968225505,0.159544317990673,0,0,0,0,0,0,0,0,0.510259740906419,0.397163804803541,0.522399578277871,0,0,0,0,0,0,0,0,0,0,0,0,0,0.204169356262369,0,0,0,0,0,0,0.377690453926732,0.608261587317087,0.183546752161682,1.56478268869608,0.872100625521786,1.5378032791413,0.58328969722285,1.25987779462826,1.43752564364972,0,0,0,0,1.14613375975503,0,6.87875966922632,9.52183762689659,9.50747105259269,1.69422266034566,1.77858959222228,0.449949858640699,0,0,1.79760066311043,3.84218305321555,5.28817022773236,4.72520784160917,5.67877395648731,7.7125765789027,5.96345060569357,4.28717797252339,5.271500906003,6.43453150627015,0,1.27687338085188,1.68967186581868,8.83638127792299,10.3381037270723,8.33461392890816,1.11673199600552,1.68828783009504,1.68078072554491,5.89257170947335,5.41012387036591,5.03278503728312,0.832988126665025,2.11600368298999,0.289864488701678,0,0,0,0,0,0.140444420131752,0.170430322578058,0.519572009205738,0,0.985903938436763,0,0,0,0,0.253359865475099,0,0.22836775943812,0.258937883647172,0.29688427812965,1.90833859442749,1.21786191324856,1.61430848079241,0.452167921657868,1.17588707135705,0.125666591329675,0.494389935468748,0,0,1.29413479957927,0.220841518460394,1.45462575940567,0,0.878342391034642,0.628340120440365,0.255457055208591,0.11981512450592,0,0.508280908292259,1.04853447583376,1.83000241127451,10.5549655774806,1.56441888173049,2.81287003063364,0.41557608911912,1.46017136760982,1.93494791315601,0.497627882440372,0,0.210441855886474,1.43132487258974,1.60931473103431,2.52086981727489,1.50704817835715,1.83698547708585,2.69038812598185,2.15513966487376,0.776110112217047,0.646703978798527,1.70195472151037,2.28736461413134,1.7535658594206,1.39023624612799,0.696504333044333,0.823128545631774,1.19420560091096,0,0.257347907114715,0.284163499395593,0.414251545071004,0.703578179943289,0.720248245844059,0.473489471170421,0.983821158737019,0.462801338662135,0.465067889500816,0.804820204198858,0.467061369468678,0.658239399653922,0.164167464079095,0.56748166682099,0,0,0.536825675041487,2.94405927989778,9.8788427884113,0,0,1.2797295032114,0.464473343720877,0.77320476793256,0.403367049246685,0.22237804384487,0.760902504450237,0,0.329397909448022,1.00534083520108,0.3979129440823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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=19730 | |||
|HGNC= | |||
|MCL_coexpression_id=22 | |||
|TSSclassifier=NA | |||
|UniProt=B0R018 | |||
|association_with_transcript=-20bp_to_ENSMUST00000135803_5end | |||
|cluster_id=chr2:28368598..28368624,+ | |||
|description=CAGE_peak_4_at_Ralgds_5end | |||
|id=chr2:28368598..28368624,+ | |||
|ontology_enrichment_celltype=CL:0000221!4.79e-15!44;CL:0000133!4.79e-15!44;CL:0002319!4.97e-15!43;CL:0000540!2.98e-13!33;CL:0000047!2.98e-13!33;CL:0000031!2.98e-13!33;CL:0000404!2.98e-13!33;CL:0000117!9.34e-12!23;CL:0000337!9.34e-12!23;CL:0000055!1.68e-11!50;CL:0000393!2.73e-10!39;CL:0000211!2.73e-10!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,4.38e-18,43;CL:0000540,1.09e-17,33;CL:0000047,1.09e-17,33;CL:0000031,1.09e-17,33;CL:0000404,1.09e-17,33;CL:0000221,2.45e-17,44;CL:0000133,2.45e-17,44;CL:0000117,8.11e-16,23;CL:0000337,8.11e-16,23;CL:0000393,7.40e-14,39;CL:0000211,7.40e-14,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!2.44e-23!75;UBERON:0001016!2.44e-23!75;UBERON:0001017!7.47e-23!73;UBERON:0005743!7.47e-23!73;UBERON:0004121!1.66e-22!102;UBERON:0000924!1.66e-22!102;UBERON:0006601!1.66e-22!102;UBERON:0002346!2.69e-18!71;UBERON:0003075!2.69e-18!71;UBERON:0007284!2.69e-18!71;UBERON:0002020!3.88e-18!34;UBERON:0001049!4.50e-17!52;UBERON:0005068!4.50e-17!52;UBERON:0006241!4.50e-17!52;UBERON:0007135!4.50e-17!52;UBERON:0003056!4.57e-16!49;UBERON:0000033!2.28e-15!63;UBERON:0002791!8.69e-15!29;UBERON:0003528!8.69e-15!29;UBERON:0001893!8.69e-15!29;UBERON:0003080!3.42e-14!40;UBERON:0002780!3.59e-14!39;UBERON:0001890!3.59e-14!39;UBERON:0006240!3.59e-14!39;UBERON:0000955!6.15e-14!50;UBERON:0006238!6.15e-14!50;UBERON:0002616!1.54e-13!49;UBERON:0000956!3.73e-11!21;UBERON:0001869!3.73e-11!21;UBERON:0000203!3.73e-11!21;UBERON:0002619!4.22e-09!17;UBERON:0000153!5.06e-07!94 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.12e-25,73;UBERON:0001016,1.19e-25,75;UBERON:0002020,3.78e-23,34;UBERON:0004121,5.90e-22,95;UBERON:0000924,5.90e-22,95;UBERON:0006601,5.90e-22,95;UBERON:0003056,1.97e-19,49;UBERON:0002346,3.59e-19,64;UBERON:0003075,3.59e-19,64;UBERON:0007284,3.59e-19,64;UBERON:0003528,1.13e-18,29;UBERON:0002791,1.13e-18,29;UBERON:0001893,1.13e-18,29;UBERON:0000073,2.38e-18,54;UBERON:0001049,1.09e-17,52;UBERON:0005068,1.09e-17,52;UBERON:0006241,1.09e-17,52;UBERON:0007135,1.09e-17,52;UBERON:0003080,1.53e-17,40;UBERON:0002780,1.67e-17,39;UBERON:0001890,1.67e-17,39;UBERON:0006240,1.67e-17,39;UBERON:0010371,2.80e-15,73;UBERON:0000955,6.30e-15,47;UBERON:0006238,6.30e-15,47;UBERON:0002616,2.03e-14,46;UBERON:0000956,8.34e-14,21;UBERON:0001869,8.34e-14,21;UBERON:0000203,8.34e-14,21;UBERON:0010314,2.57e-11,92;UBERON:0002619,4.57e-11,17;UBERON:0002021,6.79e-08,10;UBERON:0000411,6.79e-08,10;UBERON:0001950,6.79e-08,10 | |||
|phase1_expression=1.44133962394315,0,0,0,0,0,0,0.258246646883153,0.281577444303333,0,0.171217968225505,0.159544317990673,0,0,0,0,0,0,0,0,0.510259740906419,0.397163804803541,0.522399578277871,0,0,0,0,0,0,0,0,0,0,0,0,0,0.204169356262369,0,0,0,0,0,0,0.377690453926732,0.608261587317087,0.183546752161682,1.56478268869608,0.872100625521786,1.5378032791413,0.58328969722285,1.25987779462826,1.43752564364972,0,0,0,0,1.14613375975503,0,6.87875966922632,9.52183762689659,9.50747105259269,1.69422266034566,1.77858959222228,0.449949858640699,0,0,1.79760066311043,3.84218305321555,5.28817022773236,4.72520784160917,5.67877395648731,7.7125765789027,5.96345060569357,4.28717797252339,5.271500906003,6.43453150627015,0,1.27687338085188,1.68967186581868,8.83638127792299,10.3381037270723,8.33461392890816,1.11673199600552,1.68828783009504,1.68078072554491,5.89257170947335,5.41012387036591,5.03278503728312,0.832988126665025,2.11600368298999,0.289864488701678,0,0,0,0,0,0.140444420131752,0.170430322578058,0.519572009205738,0,0.985903938436763,0,0,0,0,0.253359865475099,0,0.22836775943812,0.258937883647172,0.29688427812965,1.90833859442749,1.21786191324856,1.61430848079241,0.452167921657868,1.17588707135705,0.125666591329675,0.494389935468748,0,0,1.29413479957927,0.220841518460394,1.45462575940567,0,0.878342391034642,0.628340120440365,0.255457055208591,0.11981512450592,0,0.508280908292259,1.04853447583376,1.83000241127451,10.5549655774806,1.56441888173049,2.81287003063364,0.41557608911912,1.46017136760982,1.93494791315601,0.497627882440372,0,0.210441855886474,1.43132487258974,1.60931473103431,2.52086981727489,1.50704817835715,1.83698547708585,2.69038812598185,2.15513966487376,0.776110112217047,0.646703978798527,1.70195472151037,2.28736461413134,1.7535658594206,1.39023624612799,0.696504333044333,0.823128545631774,1.19420560091096,0,0.257347907114715,0.284163499395593,0.414251545071004,0.703578179943289,0.720248245844059,0.473489471170421,0.983821158737019,0.462801338662135,0.465067889500816,0.804820204198858,0.467061369468678,0.658239399653922,0.164167464079095,0.56748166682099,0,0,0.536825675041487,2.94405927989778,9.8788427884113,0,0,1.2797295032114,0.464473343720877,0.77320476793256,0.403367049246685,0.22237804384487,0.760902504450237,0,0.329397909448022,1.00534083520108,0.397912944082302,0.38992817423824,0,0.432276099749388,0.199141273254367,1.32767530667157,0.799739588268102,1.1270773567308,0.814605311381257,0.581857461502877,0.911765658574141,0.885311519739602,0,0.156998727841375,0.246794327843601,0,0.166845105716094,0,0,0,0.241177159752417,0,0,0,0.274561413188081,0,0,0,0,0,0,0.184753190166605,0.37898282354097,1.14075483509418,0.339490171550376,0,1.17254380209271,0.238043640886014,1.36593553500459,0.472905432318573,1.99318220683897,1.2756381492599,0,0.690739927463582,0.578596234326046,0,0,0.491764273019036,0,0.80275294993896,0.586058432961016,0,0,0.631016438832513,0,1.93881057959519,2.15071918157297,2.22798674082394,2.83076530788832,2.42886421004937,1.46127928955656,1.58115111178609,1.92792789853084,0.567760340833074,2.13678724400706,1.79175655288934,1.15479086080775,0,0.485561272309963,0,0.377210159511796,0.295301892880773,0.307435147943927,0.516856586336442,0.727067458955011,1.06949213515416,0,1.05418608574999,0,0,1.26042765821917,1.03486947026204,1.71469628025274,0.709360934569094,1.07021290561242,1.15184314421485,2.74018454203139,0.469343416127421,0.63549621259146,0.220528398054962,0.32977250588296,0.807322133479528,0.422190474497091,0.477489376012546,0.328281799490123,0,0.927126510052548,0.341741761595705,0.619160603889667,0.555583582109135,0,0.136694227721025,0,0.339956859987711,0.69975726161829,0.414599921413271,0,0.949007980743406,1.42323626988794,0.540026704109006,0.209088296014469,0.655087691238533,0.404593039154462,1.07449492442937,0,0.129614973291793,0,3.38215763210514,0.747582730219894,0.496375471371293,0.972255941720238,0.904118764344118,1.18269287843545,1.76035857968631,0.911430693907651,0.629156066554265,0.483168241652012,2.30424005006292,0.316011120628178,0,0.410843828659309,0.25984164595559,0.179026695667481,0.39736270956253,0.120195449519969,0,0.100966449948148,0.0762068066549998,0.100826185136841,0.194915761479505,0,0.116876902181569,0.680191150845634,0.221985953374065,0.358855426437903,0.335769232728157,0.579568782096571,0.563047426353546,0.36630324853453,0.428736758158132,0,4.51801474093653,2.76195141904306,4.58316410751517,3.60891682921744,2.74033007908257,4.5323633843382,4.72515750162264,1.80128481289688,2.71885445390523,1.55328093525546,1.45302286617847,2.79317411380722,4.09760653809922,2.91728060481953,2.30574478890781,2.5738091183002,1.33348036680969,1.85431551515005,1.92551525755089,2.77966932940177,2.5347929989024,0.565879024158229,1.31098110457835,1.60062881012173,1.14870937911227,0.952587382566147,1.97003354106254,1.92909220463705,1.23625770240992,1.76638704161277,0.342869252385415,1.24233064311536,0.953744759789284,2.0348498328526,1.59985946706062,1.26921911837515,1.09756783723664,1.31534855718921,0.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| |||
|short_description=p4@Ralgds | |||
}} |
Latest revision as of 12:00, 26 September 2015
Short description: | p4@Ralgds |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Ralgds_5end |
Coexpression cluster: | MCL_coexpression_mm9:22 |
Association with transcript: | -20bp_to_ENSMUST00000135803_5end |
EntrezGene: | Ralgds |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 4.38e-18 | 43 |
neuron | 1.09e-17 | 33 |
neuronal stem cell | 1.09e-17 | 33 |
neuroblast | 1.09e-17 | 33 |
electrically signaling cell | 1.09e-17 | 33 |
ectodermal cell | 2.45e-17 | 44 |
neurectodermal cell | 2.45e-17 | 44 |
CNS neuron (sensu Vertebrata) | 8.11e-16 | 23 |
neuroblast (sensu Vertebrata) | 8.11e-16 | 23 |
electrically responsive cell | 7.40e-14 | 39 |
electrically active cell | 7.40e-14 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.12e-25 | 73 |
nervous system | 1.19e-25 | 75 |
gray matter | 3.78e-23 | 34 |
ectoderm-derived structure | 5.90e-22 | 95 |
ectoderm | 5.90e-22 | 95 |
presumptive ectoderm | 5.90e-22 | 95 |
pre-chordal neural plate | 1.97e-19 | 49 |
neurectoderm | 3.59e-19 | 64 |
neural plate | 3.59e-19 | 64 |
presumptive neural plate | 3.59e-19 | 64 |
brain grey matter | 1.13e-18 | 29 |
regional part of telencephalon | 1.13e-18 | 29 |
telencephalon | 1.13e-18 | 29 |
regional part of nervous system | 2.38e-18 | 54 |
neural tube | 1.09e-17 | 52 |
neural rod | 1.09e-17 | 52 |
future spinal cord | 1.09e-17 | 52 |
neural keel | 1.09e-17 | 52 |
anterior neural tube | 1.53e-17 | 40 |
regional part of forebrain | 1.67e-17 | 39 |
forebrain | 1.67e-17 | 39 |
future forebrain | 1.67e-17 | 39 |
ecto-epithelium | 2.80e-15 | 73 |
brain | 6.30e-15 | 47 |
future brain | 6.30e-15 | 47 |
regional part of brain | 2.03e-14 | 46 |
cerebral cortex | 8.34e-14 | 21 |
cerebral hemisphere | 8.34e-14 | 21 |
pallium | 8.34e-14 | 21 |
structure with developmental contribution from neural crest | 2.57e-11 | 92 |
regional part of cerebral cortex | 4.57e-11 | 17 |
occipital lobe | 6.79e-08 | 10 |
visual cortex | 6.79e-08 | 10 |
neocortex | 6.79e-08 | 10 |