FFCP PHASE1:Mm9::chr2:28980492..28980568,+: Difference between revisions
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{{FFCP|EntrezGene=269254|HGNC=|MCL_coexpression_id=60|UniProt=A2AKX3|association_with_transcript=0bp_to_ENSMUST00000061578,NM_198033,uc008izl.1,uc008izm.1_5end|description=CAGE_peak_2_at_Setx_5end|id=chr2:28980492..28980568,+|ontology_enrichment_celltype=CL:0000117!3.79e-10!23;CL:0000337!3.79e-10!23;CL:0000540!9.80e-07!33;CL:0000047!9.80e-07!33;CL:0000031!9.80e-07!33;CL:0000404!9.80e-07!33|ontology_enrichment_celltype_v019_2=CL:0000117,3.40e-10,23;CL:0000337,3.40e-10,23;CL:0000540,9.19e-07,33;CL:0000047,9.19e-07,33;CL:0000031,9.19e-07,33;CL:0000404,9.19e-07,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000033!8.32e-24!63;UBERON:0003056!4.45e-20!49;UBERON:0000955!1.48e-18!50;UBERON:0006238!1.48e-18!50;UBERON:0002616!6.81e-18!49;UBERON:0001049!9.36e-18!52;UBERON:0005068!9.36e-18!52;UBERON:0006241!9.36e-18!52;UBERON:0007135!9.36e-18!52;UBERON:0002346!4.58e-17!71;UBERON:0003075!4.58e-17!71;UBERON:0007284!4.58e-17!71;UBERON:0003080!2.42e-16!40;UBERON:0002780!9.54e-16!39;UBERON:0001890!9.54e-16!39;UBERON:0006240!9.54e-16!39;UBERON:0001017!5.54e-15!73;UBERON:0005743!5.54e-15!73;UBERON:0007811!5.67e-15!86;UBERON:0002020!1.50e-14!34;UBERON:0004121!4.35e-14!102;UBERON:0000924!4.35e-14!102;UBERON:0006601!4.35e-14!102;UBERON:0000073!6.59e-14!75;UBERON:0001016!6.59e-14!75;UBERON:0000153!7.18e-14!94;UBERON:0002791!1.02e-13!29;UBERON:0003528!1.02e-13!29;UBERON:0001893!1.02e-13!29;UBERON:0000956!7.79e-10!21;UBERON:0001869!7.79e-10!21;UBERON:0000203!7.79e-10!21;UBERON:0002021!7.60e-08!10;UBERON:0000411!7.60e-08!10;UBERON:0001950!7.60e-08!10;UBERON:0002619!9.88e-08!17|ontology_enrichment_uberon_v019_2=UBERON:0002346,1.21e-20,64;UBERON:0003075,1.21e-20,64;UBERON:0007284,1.21e-20,64;UBERON:0003056,3.73e-20,49;UBERON:0000073,3.02e-19,54;UBERON:0010371,1.40e-18,73;UBERON:0001049,5.05e-18,52;UBERON:0005068,5.05e-18,52;UBERON:0006241,5.05e-18,52;UBERON:0007135,5.05e-18,52;UBERON:0000955,4.46e-17,47;UBERON:0006238,4.46e-17,47;UBERON:0002616,2.00e-16,46;UBERON:0003080,2.13e-16,40;UBERON:0004121,3.76e-16,95;UBERON:0000924,3.76e-16,95;UBERON:0006601,3.76e-16,95;UBERON:0002780,8.44e-16,39;UBERON:0001890,8.44e-16,39;UBERON:0006240,8.44e-16,39;UBERON:0001017,3.16e-15,73;UBERON:0002020,1.34e-14,34;UBERON:0010314,1.36e-14,92;UBERON:0001016,3.89e-14,75;UBERON:0003528,9.28e-14,29;UBERON:0002791,9.28e-14,29;UBERON:0001893,9.28e-14,29;UBERON:0000956,7.43e-10,21;UBERON:0001869,7.43e-10,21;UBERON:0000203,7.43e-10,21;UBERON:0002021,7.03e-08,10;UBERON:0000411,7.03e-08,10;UBERON:0001950,7.03e-08,10;UBERON:0002619,9.66e-08,17|phase1_expression=5.12476310735341,2.09385244583617,2.27499619694768,1.51232105653415,4.50806156951712,1.6787927191189,2.33612640595526,0.645616617207881,0,0.234064526321993,1.36974374580404,0.319088635981346,0.856003649656029,1.13646523144697,0.666219523631325,2.02475267389826,2.79824751251259,1.10411757875383,1.23402990245165,1.69755860719212,12.0761472014519,0.595745707205312,1.04479915655574,0.639969691173627,0.45881856213434,1.72269589234506,3.01533397311352,1.07735616342945,1.90023419456374,2.52030129759931,0.665191531965914,1.27006134691926,0.61506478758457,0,1.44425809875637,1.82858109894342,2.45003227514843,1.25559489221072,2.3440060335714,1.57057123192139,5.29408339227913,4.09827290975067,2.42755176515577,0.377690453926732,0.709638518536602,0.183546752161682,0,0.218025156380447,0,0.972149495371417,0.699932108126813,1.43752564364972,1.00669563634642,0.725362142011344,0.672187598284928,0.771778308107841,0.573066879877513,1.03134418455488,9.71119012126069,4.7609188134483,6.97214543856797,1.0165335962074,0.889294796111139,0,0.988866362566974,0,0.299600110518405,1.15265491596466,14.9313041724208,10.8004750665353,13.0401476037857,2.28520787523043,3.53389665522582,12.8615339175702,10.3513108699695,10.1114066527102,15.4162233399144,13.5348578370299,14.5926206593431,8.30883612700221,9.60620257825301,12.5019208933622,5.30447698102624,10.1297269805702,13.1406493088057,5.89257170947335,9.681274294339,8.94717339961443,1.28734528666413,1.20914496170857,3.18850937571846,0,0,0,0.649776417447669,0.896053774194671,3.23022166303029,0.852151612890289,0,0.70667914902068,5.21120653173718,0,2.54805239706646,0,1.29894624606728,1.01343946190039,1.51657333504435,2.39786147410026,0.517875767294343,1.63286352971307,0.867426633830679,2.74018930480927,1.15307748628029,2.11011696773672,1.88141931417128,1.75933227861546,0.988779870937496,2.02439099687876,2.65383165584962,2.58826959915855,3.5334642953663,1.45462575940567,3.72783522436244,17.2740670236813,14.2423760633149,3.0654846625031,0.718890747035522,1.79970819298022,0.381210681219194,15.5782264981016,22.8750301409313,23.7486725493314,20.3374454624963,28.1287003063364,13.2984348518118,14.1149898868949,2.95334155165917,4.22983700074316,8.33985102831127,10.9429765060966,5.33493816147085,3.90833577536904,6.30217454318722,5.87748789559289,9.25296388458059,9.09607414022434,10.4945931506896,11.9003550539947,1.94011193639558,3.40390944302075,3.343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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=269254 | |||
|HGNC= | |||
|MCL_coexpression_id=60 | |||
|TSSclassifier=NA | |||
|UniProt=A2AKX3 | |||
|association_with_transcript=0bp_to_ENSMUST00000061578,NM_198033,uc008izl.1,uc008izm.1_5end | |||
|cluster_id=chr2:28980492..28980568,+ | |||
|description=CAGE_peak_2_at_Setx_5end | |||
|id=chr2:28980492..28980568,+ | |||
|ontology_enrichment_celltype=CL:0000117!3.79e-10!23;CL:0000337!3.79e-10!23;CL:0000540!9.80e-07!33;CL:0000047!9.80e-07!33;CL:0000031!9.80e-07!33;CL:0000404!9.80e-07!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,3.40e-10,23;CL:0000337,3.40e-10,23;CL:0000540,9.19e-07,33;CL:0000047,9.19e-07,33;CL:0000031,9.19e-07,33;CL:0000404,9.19e-07,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!8.32e-24!63;UBERON:0003056!4.45e-20!49;UBERON:0000955!1.48e-18!50;UBERON:0006238!1.48e-18!50;UBERON:0002616!6.81e-18!49;UBERON:0001049!9.36e-18!52;UBERON:0005068!9.36e-18!52;UBERON:0006241!9.36e-18!52;UBERON:0007135!9.36e-18!52;UBERON:0002346!4.58e-17!71;UBERON:0003075!4.58e-17!71;UBERON:0007284!4.58e-17!71;UBERON:0003080!2.42e-16!40;UBERON:0002780!9.54e-16!39;UBERON:0001890!9.54e-16!39;UBERON:0006240!9.54e-16!39;UBERON:0001017!5.54e-15!73;UBERON:0005743!5.54e-15!73;UBERON:0007811!5.67e-15!86;UBERON:0002020!1.50e-14!34;UBERON:0004121!4.35e-14!102;UBERON:0000924!4.35e-14!102;UBERON:0006601!4.35e-14!102;UBERON:0000073!6.59e-14!75;UBERON:0001016!6.59e-14!75;UBERON:0000153!7.18e-14!94;UBERON:0002791!1.02e-13!29;UBERON:0003528!1.02e-13!29;UBERON:0001893!1.02e-13!29;UBERON:0000956!7.79e-10!21;UBERON:0001869!7.79e-10!21;UBERON:0000203!7.79e-10!21;UBERON:0002021!7.60e-08!10;UBERON:0000411!7.60e-08!10;UBERON:0001950!7.60e-08!10;UBERON:0002619!9.88e-08!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,1.21e-20,64;UBERON:0003075,1.21e-20,64;UBERON:0007284,1.21e-20,64;UBERON:0003056,3.73e-20,49;UBERON:0000073,3.02e-19,54;UBERON:0010371,1.40e-18,73;UBERON:0001049,5.05e-18,52;UBERON:0005068,5.05e-18,52;UBERON:0006241,5.05e-18,52;UBERON:0007135,5.05e-18,52;UBERON:0000955,4.46e-17,47;UBERON:0006238,4.46e-17,47;UBERON:0002616,2.00e-16,46;UBERON:0003080,2.13e-16,40;UBERON:0004121,3.76e-16,95;UBERON:0000924,3.76e-16,95;UBERON:0006601,3.76e-16,95;UBERON:0002780,8.44e-16,39;UBERON:0001890,8.44e-16,39;UBERON:0006240,8.44e-16,39;UBERON:0001017,3.16e-15,73;UBERON:0002020,1.34e-14,34;UBERON:0010314,1.36e-14,92;UBERON:0001016,3.89e-14,75;UBERON:0003528,9.28e-14,29;UBERON:0002791,9.28e-14,29;UBERON:0001893,9.28e-14,29;UBERON:0000956,7.43e-10,21;UBERON:0001869,7.43e-10,21;UBERON:0000203,7.43e-10,21;UBERON:0002021,7.03e-08,10;UBERON:0000411,7.03e-08,10;UBERON:0001950,7.03e-08,10;UBERON:0002619,9.66e-08,17 | |||
|phase1_expression=5.12476310735341,2.09385244583617,2.27499619694768,1.51232105653415,4.50806156951712,1.6787927191189,2.33612640595526,0.645616617207881,0,0.234064526321993,1.36974374580404,0.319088635981346,0.856003649656029,1.13646523144697,0.666219523631325,2.02475267389826,2.79824751251259,1.10411757875383,1.23402990245165,1.69755860719212,12.0761472014519,0.595745707205312,1.04479915655574,0.639969691173627,0.45881856213434,1.72269589234506,3.01533397311352,1.07735616342945,1.90023419456374,2.52030129759931,0.665191531965914,1.27006134691926,0.61506478758457,0,1.44425809875637,1.82858109894342,2.45003227514843,1.25559489221072,2.3440060335714,1.57057123192139,5.29408339227913,4.09827290975067,2.42755176515577,0.377690453926732,0.709638518536602,0.183546752161682,0,0.218025156380447,0,0.972149495371417,0.699932108126813,1.43752564364972,1.00669563634642,0.725362142011344,0.672187598284928,0.771778308107841,0.573066879877513,1.03134418455488,9.71119012126069,4.7609188134483,6.97214543856797,1.0165335962074,0.889294796111139,0,0.988866362566974,0,0.299600110518405,1.15265491596466,14.9313041724208,10.8004750665353,13.0401476037857,2.28520787523043,3.53389665522582,12.8615339175702,10.3513108699695,10.1114066527102,15.4162233399144,13.5348578370299,14.5926206593431,8.30883612700221,9.60620257825301,12.5019208933622,5.30447698102624,10.1297269805702,13.1406493088057,5.89257170947335,9.681274294339,8.94717339961443,1.28734528666413,1.20914496170857,3.18850937571846,0,0,0,0.649776417447669,0.896053774194671,3.23022166303029,0.852151612890289,0,0.70667914902068,5.21120653173718,0,2.54805239706646,0,1.29894624606728,1.01343946190039,1.51657333504435,2.39786147410026,0.517875767294343,1.63286352971307,0.867426633830679,2.74018930480927,1.15307748628029,2.11011696773672,1.88141931417128,1.75933227861546,0.988779870937496,2.02439099687876,2.65383165584962,2.58826959915855,3.5334642953663,1.45462575940567,3.72783522436244,17.2740670236813,14.2423760633149,3.0654846625031,0.718890747035522,1.79970819298022,0.381210681219194,15.5782264981016,22.8750301409313,23.7486725493314,20.3374454624963,28.1287003063364,13.2984348518118,14.1149898868949,2.95334155165917,4.22983700074316,8.33985102831127,10.9429765060966,5.33493816147085,3.90833577536904,6.30217454318722,5.87748789559289,9.25296388458059,9.09607414022434,10.4945931506896,11.9003550539947,1.94011193639558,3.40390944302075,3.34307135911503,1.7535658594206,3.89266148915837,2.78601733217733,1.85203922767149,3.98068533636986,0,0.772043721344145,0.568326998791185,2.07125772535502,1.64168241986767,1.44049649168812,2.84093682702252,2.16440654922144,2.77680803197281,2.32533944750408,1.60964040839772,2.10177616260905,3.29119699826961,1.97000956894914,4.62092214411378,3.36259971078264,4.17145219052996,3.89198614405078,16.6129059365661,28.2987684043032,2.97376904685418,1.58670339998127,1.2797295032114,3.25131340604614,2.31961430379768,1.81515172161008,2.44615848229357,2.66315876557583,0.949058123089023,1.4822905925161,2.5133520880027,2.58643413653496,2.53453313254856,4.49409704327111,1.29682829924817,2.98711909881551,0.948339504765408,2.97046132785295,3.38123207019241,3.46207257337034,0.969762435838129,1.54298803758701,2.27651533647326,1.62371162777562,1.255989822731,0.987177311374404,0.889357881261447,3.33690211432188,2.35870794135844,1.57403478669398,1.42002084971952,0.964708639009667,1.52775511068852,0.863088412352432,0.810676133875177,0.549122826376163,1.43768206527355,1.11642284300551,1.5601883655728,1.01031551178845,2.15276896226295,0,1.66277871149944,4.16881105895066,1.95557971730431,1.52770577197669,1.87752198630802,2.68010011906905,2.38043640886014,1.56106918286239,3.4679731703362,2.87904096543407,3.18909537314974,1.96635977658886,1.55416483679306,1.44649058581512,0,0.54390568381871,0.983528546038072,0.827810238914197,14.6101036888891,11.8383803458125,1.80328439914343,5.55436039849621,2.83957397474631,1.56175497718655,1.72338718186239,1.43381278771531,1.33679204449436,2.83076530788832,1.21443210502468,1.75353514746787,3.16230222357219,21.8498495166829,1.56134093729095,2.84904965867608,1.62886959353576,2.96946221350564,2.65490276679926,1.94224508923985,1.209294227859,2.07465587731488,0,1.22974059177571,2.06742634534577,1.81766864738753,2.85197902707777,2.84433082142234,3.16255825724996,0,8.85142974959849,4.86164953884538,1.94038025674132,5.14408884075822,6.20690817747958,4.8159580752559,5.59466670047211,2.13125464380219,0.938686832254841,1.69465656691056,1.10264199027481,2.30840754118072,1.45317984026315,3.25689794612042,2.98430860007841,3.28281799490123,1.45740418314925,12.2380699326936,2.05045056957423,1.23832120777933,1.66675074632741,0.941842285023455,1.6403307326523,1.60144721244566,0.679913719975421,0.839708713941948,1.52019971184866,0,4.27053591334533,1.62655573701479,2.91614420218863,2.71814784818809,1.74690050996942,1.48350781023303,1.65306911450672,2.87931536182433,2.20345454596048,4.34937519160848,52.4234432976297,3.58839710505549,2.97825282822776,4.2779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| |||
|short_description=p2@Setx | |||
}} |
Latest revision as of 12:23, 26 September 2015
Short description: | p2@Setx |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Setx_5end |
Coexpression cluster: | MCL_coexpression_mm9:60 |
Association with transcript: | 0bp_to_ENSMUST00000061578, NM_198033, uc008izl.1, uc008izm.1_5end |
EntrezGene: | Setx |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 3.40e-10 | 23 |
neuroblast (sensu Vertebrata) | 3.40e-10 | 23 |
neuron | 9.19e-07 | 33 |
neuronal stem cell | 9.19e-07 | 33 |
neuroblast | 9.19e-07 | 33 |
electrically signaling cell | 9.19e-07 | 33 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 1.21e-20 | 64 |
neural plate | 1.21e-20 | 64 |
presumptive neural plate | 1.21e-20 | 64 |
pre-chordal neural plate | 3.73e-20 | 49 |
regional part of nervous system | 3.02e-19 | 54 |
ecto-epithelium | 1.40e-18 | 73 |
neural tube | 5.05e-18 | 52 |
neural rod | 5.05e-18 | 52 |
future spinal cord | 5.05e-18 | 52 |
neural keel | 5.05e-18 | 52 |
brain | 4.46e-17 | 47 |
future brain | 4.46e-17 | 47 |
regional part of brain | 2.00e-16 | 46 |
anterior neural tube | 2.13e-16 | 40 |
ectoderm-derived structure | 3.76e-16 | 95 |
ectoderm | 3.76e-16 | 95 |
presumptive ectoderm | 3.76e-16 | 95 |
regional part of forebrain | 8.44e-16 | 39 |
forebrain | 8.44e-16 | 39 |
future forebrain | 8.44e-16 | 39 |
central nervous system | 3.16e-15 | 73 |
gray matter | 1.34e-14 | 34 |
structure with developmental contribution from neural crest | 1.36e-14 | 92 |
nervous system | 3.89e-14 | 75 |
brain grey matter | 9.28e-14 | 29 |
regional part of telencephalon | 9.28e-14 | 29 |
telencephalon | 9.28e-14 | 29 |
cerebral cortex | 7.43e-10 | 21 |
cerebral hemisphere | 7.43e-10 | 21 |
pallium | 7.43e-10 | 21 |
occipital lobe | 7.03e-08 | 10 |
visual cortex | 7.03e-08 | 10 |
neocortex | 7.03e-08 | 10 |
regional part of cerebral cortex | 9.66e-08 | 17 |