FFCP PHASE1:Hg19::chr9:139379054..139379061,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr9:139379054..139379061,- | |||
|coexpression_cluster_id=C1549 | |||
|description=CAGE_peak_at_chr9:139379054..139379061,- | |||
|id=chr9:139379054..139379061,- | |||
|ontology_enrichment_celltype=CL:0000066!2.99e-20!254;CL:0002159!6.78e-17!13;CL:0002076!1.04e-16!43;CL:0000223!6.00e-14!59;CL:0002327!2.34e-12!4;CL:0002368!4.12e-10!13;CL:0002166!1.42e-09!3;CL:0002251!4.07e-09!21;CL:0000076!8.53e-09!62;CL:0000240!8.96e-08!6;CL:0000311!8.96e-08!6;CL:0000079!8.96e-08!6;CL:0000237!8.96e-08!6;CL:0000036!8.96e-08!6;CL:0000357!8.96e-08!6;CL:0000114!8.96e-08!6;CL:0000244!2.86e-07!4;CL:0000731!2.86e-07!4;CL:0000575!8.80e-07!2 | |||
|ontology_enrichment_celltype_v019=CL:0000362;7.86e-29;9!CL:0000312;2.02e-23;5!CL:0000240;1.04e-19;6!CL:0000311;1.04e-19;6!CL:0000079;1.04e-19;6!CL:0000237;1.04e-19;6!CL:0002159;7.55e-19;14!CL:0000317;1.43e-15;2!CL:1000448;1.43e-15;2!CL:0002308;1.43e-15;2!CL:0002140;1.43e-15;2!CL:0002231;1.04e-10;3!CL:0002327;1.70e-08;4!CL:0002077;2.72e-08;34!CL:0000622;5.23e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000362,8.25e-29,9;CL:0000312,2.02e-23,5;CL:0000240,1.04e-19,6;CL:0000311,1.04e-19,6;CL:0000079,1.04e-19,6;CL:0000237,1.04e-19,6;CL:0000036,1.04e-19,6;CL:0000357,1.04e-19,6;CL:0000114,1.04e-19,6;CL:0002159,7.78e-19,14;CL:0000317,1.54e-15,2;CL:1000448,1.54e-15,2;CL:0002308,1.54e-15,2;CL:0002140,1.54e-15,2;CL:0002231,1.20e-10,3;CL:0002327,1.70e-08,4;CL:0002077,3.49e-08,34;CL:0000622,5.38e-07,5 | |||
|ontology_enrichment_development_v019=UBERON:0008425;7.48e-30;1!CL:0000357;1.04e-19;6!CL:0000114;1.04e-19;6 | |||
|ontology_enrichment_disease=DOID:1749!2.15e-08!14;DOID:5093!2.08e-07!4;DOID:1612!2.08e-07!4 | |||
|ontology_enrichment_disease_v019=DOID:5093;1.70e-08;4!DOID:1612;1.70e-08;4 | |||
|ontology_enrichment_disease_v019_2=DOID:5093,1.70e-08,4;DOID:1612,1.70e-08,4 | |||
|ontology_enrichment_uberon=UBERON:0004119!1.28e-12!169;UBERON:0000925!1.28e-12!169;UBERON:0006595!1.28e-12!169;UBERON:0001911!2.34e-12!4;UBERON:0005333!2.34e-12!4;UBERON:0008425!2.34e-12!4;UBERON:0005311!2.34e-12!4;UBERON:0001007!5.41e-08!155;UBERON:0001555!5.41e-08!155;UBERON:0007026!5.41e-08!155;UBERON:0005911!2.13e-07!82;UBERON:0001708!2.92e-07!4;UBERON:0001704!2.92e-07!4;UBERON:0002530!4.01e-07!59 | |||
|ontology_enrichment_uberon_v019=UBERON:0001003;1.20e-17;15!UBERON:0007376;1.20e-17;15!UBERON:0002419;1.43e-15;2!UBERON:0007771;1.43e-15;2!UBERON:0003297;1.43e-15;2!UBERON:0001821;1.43e-15;2!UBERON:0003487;1.43e-15;2!UBERON:0001820;1.43e-15;2!UBERON:0010371;3.41e-09;31!UBERON:0001911;1.70e-08;4!UBERON:0002097;2.16e-07;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001003,1.23e-17,15;UBERON:0007376,1.23e-17,15;UBERON:0007383,1.23e-17,15;UBERON:0002419,1.54e-15,2;UBERON:0007771,1.54e-15,2;UBERON:0003297,1.54e-15,2;UBERON:0001821,1.54e-15,2;UBERON:0003487,1.54e-15,2;UBERON:0001820,1.54e-15,2;UBERON:0005089,1.54e-15,2;UBERON:0005088,1.54e-15,2;UBERON:0001911,1.70e-08,4;UBERON:0005333,1.70e-08,4;UBERON:0008425,1.70e-08,4;UBERON:0005311,1.70e-08,4;UBERON:0010371,4.67e-07,104;UBERON:0002097,6.81e-07,41 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30120591877825,0.739508020333575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.364295288292542,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168336113954066,0,0,0,0,0,0,0,0,0,0,0,0,0.18611685633159,0,0,0.252433774244115,0,0,0,0,0,0,0.545492241181669,0.286804595389004,0,0,0,0,0,0,0,0,0,0,0,0.118306800039844,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982827216677626,0,0,0.368965315629341,0,1.20725313949488,1.1240175325762,0.100528972411631,0.185176890317059,0,0,0,0,0,0,0,0,0,0.858486162094873,0,0,0,0.93733833986777,0.335964256397719,0.425325291727159,0.358234090811393,0.290633938513962,0.766765358330422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128139149255701,0,0,0,0,0,0,0,0,0,1.00253235151642,0.0920809889358963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.29706215198469,0,0,0,0,0,0,0,0,0,0,0.661139661443912,0.192190067365106,0.510450849978337,0.6069466851333,0.464845549297286,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.288666338176536,0,0,0,0.43050537267123,0,0.443430153536676,0.459446800413919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23874448473769,0,0,0,0,0.111308705022906,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.260427761085233,3.76077999983642,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.20990716048664,0,0,0,0,0,0,0,0,0,0,0,0.195984794828755,0.174118413160805,0,0,0,0,0,0,0,0,0,0,0,0,0.240476460754601,0,0,0.288180834308212,0,0,0,0.124252535565433,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164831716762333,0,0,0,0,0,0,0,0,0,0,0,0.335434687599266,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.732761168390412,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.428883182749851,0.521988583930423,0,0,0,0.358177682162975,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196295437002051,0,0.366857197043358,0,0,0,0,0,0,2.34454203369928,0,0,0,0,0,0,0,0,0,0,0,0.127762427639595,0,0,0,0,0,0,0,0,0,0,0.111231401892069,0,0,0.280272163313789,0,0,0,0,0,0.116241425368125,0,0,0,0,0,0,0,0,0,0,0,0,0.111855431797792,0,0.243835849964539,0,0,0,0,0,0,0,0,0,0,0,0,0.470317296361523,0,0.235676547101626,0,0,0,0,0,0,0,0.178553938605658,0.352894871715692,0.0802413666891683,0,0,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129177819672012,0,0.112131862580613,0,0,0,0,0.26940821205835,0.143444410785353,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr9:139379054..139379061,- | |||
}} |
Latest revision as of 00:19, 1 August 2015
Short description: | p@chr9:139379054..139379061, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr9:139379054..139379061, - |
Coexpression cluster: | C1549_breast_liver_Sebocyte_Hepatocyte_pancreas_Bronchial_Prostate |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epidermal cell | 8.25e-29 | 9 |
keratinocyte | 2.02e-23 | 5 |
stratified squamous epithelial cell | 1.04e-19 | 6 |
keratin accumulating cell | 1.04e-19 | 6 |
stratified epithelial cell | 1.04e-19 | 6 |
keratinizing barrier epithelial cell | 1.04e-19 | 6 |
epithelial fate stem cell | 1.04e-19 | 6 |
stratified epithelial stem cell | 1.04e-19 | 6 |
surface ectodermal cell | 1.04e-19 | 6 |
general ecto-epithelial cell | 7.78e-19 | 14 |
sebum secreting cell | 1.54e-15 | 2 |
epithelial cell of sweat gland | 1.54e-15 | 2 |
epithelial cell of skin gland | 1.54e-15 | 2 |
acinar cell of sebaceous gland | 1.54e-15 | 2 |
epithelial cell of prostate | 1.20e-10 | 3 |
mammary gland epithelial cell | 1.70e-08 | 4 |
ecto-epithelial cell | 3.49e-08 | 34 |
acinar cell | 5.38e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
skin epidermis | 1.23e-17 | 15 |
outer epithelium | 1.23e-17 | 15 |
enveloping layer of ectoderm | 1.23e-17 | 15 |
skin gland | 1.54e-15 | 2 |
epidermis gland | 1.54e-15 | 2 |
gland of integumental system | 1.54e-15 | 2 |
sebaceous gland | 1.54e-15 | 2 |
skin sebaceous gland | 1.54e-15 | 2 |
sweat gland | 1.54e-15 | 2 |
sweat gland placode | 1.54e-15 | 2 |
sebaceous gland placode | 1.54e-15 | 2 |
mammary gland | 1.70e-08 | 4 |
mammary bud | 1.70e-08 | 4 |
mammary ridge | 1.70e-08 | 4 |
mammary placode | 1.70e-08 | 4 |
ecto-epithelium | 4.67e-07 | 104 |
skin of body | 6.81e-07 | 41 |
Ontology term | p-value | n |
---|---|---|
thoracic cancer | 1.70e-08 | 4 |
breast cancer | 1.70e-08 | 4 |