FF:58-23B2: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@ | |DRA_sample_Accession=CAGE@SAMD00005687 | ||
|accession_numbers=CAGE;DRX008953;DRR009827;DRZ001252;DRZ002635 | |accession_numbers=CAGE;DRX008953;DRR009827;DRZ001252;DRZ002635;DRZ012602;DRZ013985 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0001301,UBERON:0000479,UBERON:0000058,UBERON:0005156,UBERON:0000062,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003135,UBERON:0003133,UBERON:0005904,UBERON:0004175,UBERON:0010317,UBERON:0003101,UBERON:0000079,UBERON:0006947,UBERON:0004054 | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0001301,UBERON:0000479,UBERON:0000058,UBERON:0005156,UBERON:0000062,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003135,UBERON:0003133,UBERON:0005904,UBERON:0004175,UBERON:0010317,UBERON:0003101,UBERON:0000079,UBERON:0006947,UBERON:0004054 | ||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr16:43247391..43247422,+!p12@Zbtb20!2.14!135.96!Zbtb20;;chrX:48499591..48499593,-!p3@Mbnl3!2.10!125.86!Mbnl3;;chr11:96143666..96143725,+!p1@Hoxb8!2.05!126.87!Hoxb8;;chr11:96147952..96147967,+!p1@Hoxb7!1.95!109.68!Hoxb7;;chr1:19199236..19199258,+!p1@Tfap2b!1.91!79.86!Tfap2b;;chr5:138199361..138199441,+!p2@Tsc22d4!1.86!129.90!Tsc22d4;;chr2:103143336..103143367,-!p1@Ehf!1.85!110.44!Ehf;;chr2:24331085..24331100,-!p1@Pax8!1.85!70.26!Pax8;;chr10:67000609..67000625,+!p1@Egr2!1.84!152.39!Egr2;;chr1:42752574..42752621,+!p@chr1:42752574..42752621,+!1.79!76.57!Pou3f3;;chr19:59533221..59533271,+!p1@Emx2!1.77!71.27!Emx2;;chr11:34108085..34108092,-!p1@Foxi1!1.77!58.38!Foxi1;;chr11:96160426..96160443,+!p2@Hoxb6!1.76!57.12!Hoxb6;;chr1:137155026..137155042,-!p1@Elf3!1.69!267.63!Elf3;;chr2:74543397..74543435,+!p2@Hoxd8!1.65!43.72!Hoxd8;;chr2:74549968..74549996,+!p1@Hoxd3!1.55!43.22!Hoxd3;;chr11:121380594..121380609,-!p2@Zfp750!1.47!48.52!Zfp750;;chr2:74550015..74550057,+!p2@Hoxd3!1.47!28.81!Hoxd3;;chr11:96153767..96153822,+!p1@Hoxb6!1.46!42.20!Hoxb6;;chrX:95345005..95345053,+!p1@Ar!1.45!27.29!Ar;;chr11:96143843..96143868,+!p3@Hoxb8!1.44!26.54!Hoxb8;;chr11:96160360..96160397,+!p3@Hoxb6!1.41!24.77!Hoxb6;;chr1:165219453..165219469,-!p11@Prrx1!1.41!24.77!Prrx1;;chr11:83664365..83664383,+!p1@Hnf1b!1.41!24.51!Hnf1b;;chr11:96145393..96145407,+!p3@Hoxb7!1.36!21.99!Hoxb7;;chr11:96160451..96160462,+!p5@Hoxb6!1.35!21.23!Hoxb6;;chr16:43235969..43235989,+!p20@Zbtb20!1.34!20.98!Zbtb20;;chr19:44831390..44831414,+!p1@Pax2!1.28!17.94!Pax2;;chr11:96160068..96160084,+!p6@Hoxb6!1.26!17.19!Hoxb6;;chr11:96160403..96160416,+!p4@Hoxb6!1.25!16.93!Hoxb6;;chr1:19202352..19202354,+!p2@Tfap2b!1.25!16.93!Tfap2b;;chr2:25562241..25562250,+!p4@Bmyc!1.23!17.94!Bmyc;;chr10:5636374..5636421,-!p1@Esr1!1.22!19.71!Esr1;;chr2:103143315..103143328,-!p2@Ehf!1.22!15.42!Ehf;;chr2:74560109..74560131,+!p1@Hoxd4!1.22!15.42!Hoxd4;;chr14:22808697..22808715,-!p4@Zfp503!1.21!17.94!Zfp503;;chr6:145813905..145813932,-!p2@Bhlhe41!1.20!28.05!Bhlhe41;;chr11:121380640..121380655,-!p1@Zfp750!1.20!24.77!Zfp750;;chr6:145814003..145814056,-!p1@Bhlhe41!1.19!41.45!Bhlhe41;;chr11:101645830..101645881,-!p2@Etv4!1.18!26.28!Etv4;;chr2:74542918..74542971,+!p1@Hoxd8!1.17!20.72!Hoxd8;;chr10:5636354..5636373,-!p2@Esr1!1.17!13.90!Esr1;;chr19:59533139..59533152,+!p2@Emx2!1.17!13.90!Emx2;;chr13:93346120..93346155,-!p1@Spz1!1.17!13.65!Spz1;;chr2:74550178..74550214,+!p5@Hoxd3!1.15!14.66!Hoxd3;;chr11:121380611..121380625,-!p3@Zfp750!1.13!15.42!Zfp750;;chr11:96143962..96144035,+!p2@Hoxb8!1.13!12.64!Hoxb8;;chr2:74549945..74549965,+!p4@Hoxd3!1.13!12.38!Hoxd3;;chr2:25562346..25562433,+!p1@Bmyc!1.11!217.59!Bmyc;;chr6:51382677..51382783,+!p1@Nfe2l3!1.11!30.83!Nfe2l3;;chr16:25801993..25802014,+!p1@Trp63!1.10!11.63!Trp63;;chr2:25562263..25562314,+!p2@Bmyc!1.09!43.97!Bmyc;;chr2:25562315..25562344,+!p3@Bmyc!1.08!36.90!Bmyc;;chr2:9800207..9800234,-!p1@Gata3!1.07!33.36!Gata3;;chr2:74583776..74583815,+!p3@Hoxd3!1.06!10.61!Hoxd3;;chr2:103123925..103123959,-!p3@Ehf!1.05!10.11!Ehf;;chr16:43363837..43363842,+!p11@Zbtb20!1.04!18.95!Zbtb20;;chr10:66998213..66998240,+!p4@Egr2!1.04!9.86!Egr2;;chr12:39507404..39507441,+!p4@Etv1!1.03!13.65!Etv1;;chr15:102828658..102828678,+!p1@Hoxc6!1.03!9.60!Hoxc6;;chr2:74536026..74536039,+!p1@Hoxd9!1.03!9.60!Hoxd9;;chr2:74543202..74543213,+!p3@Hoxd8!1.03!9.60!Hoxd8;;chr10:22539932..22539956,-!p1@Tcf21!0.99!23.76!Tcf21;;chr13:40826961..40827001,-!p4@Tfap2a!0.99!8.85!Tfap2a;;chr2:74565306..74565327,+!p2@Hoxd4!0.98!8.59!Hoxd4;;chr19:59533163..59533185,+!p3@Emx2!0.98!8.59!Emx2;;chr10:66998241..66998263,+!p2@Egr2!0.98!8.59!Egr2;;chr13:40826150..40826167,-!p3@Tfap2a!0.97!9.35!Tfap2a;;chr5:135582751..135582788,+!p1@Mlxipl!0.95!32.85!Mlxipl;;chrX:7341077..7341091,+!p5@Tfe3!0.94!13.39!Tfe3;;chr11:96213288..96213332,+!p@chr11:96213288..96213332,+!0.93!13.14!Hoxb2;;chr11:96132637..96132652,+!p1@Hoxb9!0.93!7.58!Hoxb9;;chr13:40825465..40825469,-!p2@Tfap2a!0.93!7.58!Tfap2a;;chr11:52096750..52096772,-!p4@Tcf7!0.92!11.63!Tcf7;;chr12:77278238..77278252,-!p1@Esr2!0.91!7.08!Esr2;;chr16:22439681..22439698,-!p1@Etv5!0.90!126.87!Etv5;;chr16:22439654..22439676,-!p2@Etv5!0.89!41.95!Etv5;;chr16:22439804..22439806,-!p4@Etv5!0.89!6.82!Etv5;;chr16:43363968..43364001,+!p7@Zbtb20!0.88!12.38!Zbtb20;;chr15:37162834..37162849,+!p2@Grhl2!0.88!7.83!Grhl2;;chr13:40829137..40829205,-!p1@Tfap2a!0.87!7.33!Tfap2a;;chr19:25746898..25746910,+!p1@Dmrt2!0.86!9.60!Dmrt2;;chr16:43236037..43236050,+!p35@Zbtb20!0.86!6.32!Zbtb20;;chr15:37163124..37163153,+!p3@Grhl2!0.86!6.32!Grhl2;;chr13:96093557..96093561,+!p6@Zbed3!0.86!6.32!Zbed3;;chr2:74543235..74543246,+!p7@Hoxd8!0.86!6.32!Hoxd8;;chr11:52096804..52096896,-!p1@Tcf7!0.85!52.82!Tcf7;;chr15:37162796..37162828,+!p1@Grhl2!0.85!10.61!Grhl2;;chr2:127308277..127308313,-!p4@Kcnip3!0.85!7.33!Kcnip3;;chr3:130813200..130813252,+!p1@Lef1!0.84!28.30!Lef1;;chr5:104121453..104121479,+!p4@Aff1!0.83!28.05!Aff1;;chr2:77357622..77357704,-!p1@Zfp385b!0.82!15.92!Zfp385b;;c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| |expression_enrichment_score=chr16:43247391..43247422,+!p12@Zbtb20!2.14!135.96!Zbtb20;;chrX:48499591..48499593,-!p3@Mbnl3!2.10!125.86!Mbnl3;;chr11:96143666..96143725,+!p1@Hoxb8!2.05!126.87!Hoxb8;;chr11:96147952..96147967,+!p1@Hoxb7!1.95!109.68!Hoxb7;;chr1:19199236..19199258,+!p1@Tfap2b!1.91!79.86!Tfap2b;;chr5:138199361..138199441,+!p2@Tsc22d4!1.86!129.90!Tsc22d4;;chr2:103143336..103143367,-!p1@Ehf!1.85!110.44!Ehf;;chr2:24331085..24331100,-!p1@Pax8!1.85!70.26!Pax8;;chr10:67000609..67000625,+!p1@Egr2!1.84!152.39!Egr2;;chr1:42752574..42752621,+!p@chr1:42752574..42752621,+!1.79!76.57!Pou3f3;;chr19:59533221..59533271,+!p1@Emx2!1.77!71.27!Emx2;;chr11:34108085..34108092,-!p1@Foxi1!1.77!58.38!Foxi1;;chr11:96160426..96160443,+!p2@Hoxb6!1.76!57.12!Hoxb6;;chr1:137155026..137155042,-!p1@Elf3!1.69!267.63!Elf3;;chr2:74543397..74543435,+!p2@Hoxd8!1.65!43.72!Hoxd8;;chr2:74549968..74549996,+!p1@Hoxd3!1.55!43.22!Hoxd3;;chr11:121380594..121380609,-!p2@Zfp750!1.47!48.52!Zfp750;;chr2:74550015..74550057,+!p2@Hoxd3!1.47!28.81!Hoxd3;;chr11:96153767..96153822,+!p1@Hoxb6!1.46!42.20!Hoxb6;;chrX:95345005..95345053,+!p1@Ar!1.45!27.29!Ar;;chr11:96143843..96143868,+!p3@Hoxb8!1.44!26.54!Hoxb8;;chr11:96160360..96160397,+!p3@Hoxb6!1.41!24.77!Hoxb6;;chr1:165219453..165219469,-!p11@Prrx1!1.41!24.77!Prrx1;;chr11:83664365..83664383,+!p1@Hnf1b!1.41!24.51!Hnf1b;;chr11:96145393..96145407,+!p3@Hoxb7!1.36!21.99!Hoxb7;;chr11:96160451..96160462,+!p5@Hoxb6!1.35!21.23!Hoxb6;;chr16:43235969..43235989,+!p20@Zbtb20!1.34!20.98!Zbtb20;;chr19:44831390..44831414,+!p1@Pax2!1.28!17.94!Pax2;;chr11:96160068..96160084,+!p6@Hoxb6!1.26!17.19!Hoxb6;;chr11:96160403..96160416,+!p4@Hoxb6!1.25!16.93!Hoxb6;;chr1:19202352..19202354,+!p2@Tfap2b!1.25!16.93!Tfap2b;;chr2:25562241..25562250,+!p4@Bmyc!1.23!17.94!Bmyc;;chr10:5636374..5636421,-!p1@Esr1!1.22!19.71!Esr1;;chr2:103143315..103143328,-!p2@Ehf!1.22!15.42!Ehf;;chr2:74560109..74560131,+!p1@Hoxd4!1.22!15.42!Hoxd4;;chr14:22808697..22808715,-!p4@Zfp503!1.21!17.94!Zfp503;;chr6:145813905..145813932,-!p2@Bhlhe41!1.20!28.05!Bhlhe41;;chr11:121380640..121380655,-!p1@Zfp750!1.20!24.77!Zfp750;;chr6:145814003..145814056,-!p1@Bhlhe41!1.19!41.45!Bhlhe41;;chr11:101645830..101645881,-!p2@Etv4!1.18!26.28!Etv4;;chr2:74542918..74542971,+!p1@Hoxd8!1.17!20.72!Hoxd8;;chr10:5636354..5636373,-!p2@Esr1!1.17!13.90!Esr1;;chr19:59533139..59533152,+!p2@Emx2!1.17!13.90!Emx2;;chr13:93346120..93346155,-!p1@Spz1!1.17!13.65!Spz1;;chr2:74550178..74550214,+!p5@Hoxd3!1.15!14.66!Hoxd3;;chr11:121380611..121380625,-!p3@Zfp750!1.13!15.42!Zfp750;;chr11:96143962..96144035,+!p2@Hoxb8!1.13!12.64!Hoxb8;;chr2:74549945..74549965,+!p4@Hoxd3!1.13!12.38!Hoxd3;;chr2:25562346..25562433,+!p1@Bmyc!1.11!217.59!Bmyc;;chr6:51382677..51382783,+!p1@Nfe2l3!1.11!30.83!Nfe2l3;;chr16:25801993..25802014,+!p1@Trp63!1.10!11.63!Trp63;;chr2:25562263..25562314,+!p2@Bmyc!1.09!43.97!Bmyc;;chr2:25562315..25562344,+!p3@Bmyc!1.08!36.90!Bmyc;;chr2:9800207..9800234,-!p1@Gata3!1.07!33.36!Gata3;;chr2:74583776..74583815,+!p3@Hoxd3!1.06!10.61!Hoxd3;;chr2:103123925..103123959,-!p3@Ehf!1.05!10.11!Ehf;;chr16:43363837..43363842,+!p11@Zbtb20!1.04!18.95!Zbtb20;;chr10:66998213..66998240,+!p4@Egr2!1.04!9.86!Egr2;;chr12:39507404..39507441,+!p4@Etv1!1.03!13.65!Etv1;;chr15:102828658..102828678,+!p1@Hoxc6!1.03!9.60!Hoxc6;;chr2:74536026..74536039,+!p1@Hoxd9!1.03!9.60!Hoxd9;;chr2:74543202..74543213,+!p3@Hoxd8!1.03!9.60!Hoxd8;;chr10:22539932..22539956,-!p1@Tcf21!0.99!23.76!Tcf21;;chr13:40826961..40827001,-!p4@Tfap2a!0.99!8.85!Tfap2a;;chr2:74565306..74565327,+!p2@Hoxd4!0.98!8.59!Hoxd4;;chr19:59533163..59533185,+!p3@Emx2!0.98!8.59!Emx2;;chr10:66998241..66998263,+!p2@Egr2!0.98!8.59!Egr2;;chr13:40826150..40826167,-!p3@Tfap2a!0.97!9.35!Tfap2a;;chr5:135582751..135582788,+!p1@Mlxipl!0.95!32.85!Mlxipl;;chrX:7341077..7341091,+!p5@Tfe3!0.94!13.39!Tfe3;;chr11:96213288..96213332,+!p@chr11:96213288..96213332,+!0.93!13.14!Hoxb2;;chr11:96132637..96132652,+!p1@Hoxb9!0.93!7.58!Hoxb9;;chr13:40825465..40825469,-!p2@Tfap2a!0.93!7.58!Tfap2a;;chr11:52096750..52096772,-!p4@Tcf7!0.92!11.63!Tcf7;;chr12:77278238..77278252,-!p1@Esr2!0.91!7.08!Esr2;;chr16:22439681..22439698,-!p1@Etv5!0.90!126.87!Etv5;;chr16:22439654..22439676,-!p2@Etv5!0.89!41.95!Etv5;;chr16:22439804..22439806,-!p4@Etv5!0.89!6.82!Etv5;;chr16:43363968..43364001,+!p7@Zbtb20!0.88!12.38!Zbtb20;;chr15:37162834..37162849,+!p2@Grhl2!0.88!7.83!Grhl2;;chr13:40829137..40829205,-!p1@Tfap2a!0.87!7.33!Tfap2a;;chr19:25746898..25746910,+!p1@Dmrt2!0.86!9.60!Dmrt2;;chr16:43236037..43236050,+!p35@Zbtb20!0.86!6.32!Zbtb20;;chr15:37163124..37163153,+!p3@Grhl2!0.86!6.32!Grhl2;;chr13:96093557..96093561,+!p6@Zbed3!0.86!6.32!Zbed3;;chr2:74543235..74543246,+!p7@Hoxd8!0.86!6.32!Hoxd8;;chr11:52096804..52096896,-!p1@Tcf7!0.85!52.82!Tcf7;;chr15:37162796..37162828,+!p1@Grhl2!0.85!10.61!Grhl2;;chr2:127308277..127308313,-!p4@Kcnip3!0.85!7.33!Kcnip3;;chr3:130813200..130813252,+!p1@Lef1!0.84!28.30!Lef1;;chr5:104121453..104121479,+!p4@Aff1!0.83!28.05!Aff1;;chr2:77357622..77357704,-!p1@Zfp385b!0.82!15.92!Zfp385b;;chr5:65203599..65203617,+!p8@Klf3!0.82!9.60!Klf3;;chr11:83664334..83664353,+!p2@Hnf1b!0.82!5.56!Hnf1b;;chr2:74535796..74535808,+!p3@Hoxd9!0.82!5.56!Hoxd9;;chr13:40824310..40824314,-!p6@Tfap2a!0.82!5.56!Tfap2a;;chr11:60023912..60023930,-!p1@Srebf1!0.81!144.30!Srebf1;;chr5:77524250..77524300,-!p1@Hopx!0.81!120.55!Hopx;;chr16:92697560..92697592,-!p2@Runx1!0.80!36.14!Runx1;;chr5:120121446..120121461,+!p2@Tbx3!0.80!18.95!Tbx3;;chr15:35225845..35225867,+!p1@Osr2!0.80!14.15!Osr2;;chr19:12871064..12871095,-!p2@Zfp91!0.80!5.31!Zfp91;;chr19:44831420..44831432,+!p3@Pax2!0.80!5.31!Pax2;;chr11:52096732..52096741,-!p6@Tcf7!0.80!5.31!Tcf7;;chr6:38204087..38204108,-!p2@D630045J12Rik!0.79!16.17!D630045J12Rik;;chr7:91558392..91558434,-!p1@Arnt2!0.78!14.66!Arnt2;;chr8:73905344..73905381,-!p2@Nr2f6!0.78!12.89!Nr2f6;;chr19:59533206..59533217,+!p9@Emx2!0.78!5.05!Emx2;;chr11:96160119..96160135,+!p7@Hoxb6!0.78!5.05!Hoxb6;;chr11:96145450..96145517,+!p2@Hoxb7!0.77!7.58!Hoxb7;;chr11:85646303..85646329,+!p1@Tbx2!0.76!34.62!Tbx2;;chr10:50614546..50614568,+!p@chr10:50614546..50614568,+!0.76!4.80!Sim1;;chr19:59534052..59534083,+!p8@Emx2!0.76!4.80!Emx2;;chr3:98186461..98186476,+!p2@Zfp697!0.76!4.80!Zfp697;;chr16:43619101..43619151,+!p6@Zbtb20!0.75!11.88!Zbtb20;;chr11:85646469..85646488,+!p5@Tbx2!0.74!7.08!Tbx2;;chr11:96164821..96164865,+!p1@Hoxb5!0.74!4.55!Hoxb5;;chr11:96143728..96143745,+!p4@Hoxb8!0.74!4.55!Hoxb8;;chr11:96145362..96145389,+!p4@Hoxb7!0.74!4.55!Hoxb7;;chr15:102821007..102821021,+!p2@Hoxc8!0.74!4.55!Hoxc8;;chr19:59533429..59533470,+!p4@Emx2!0.74!4.55!Emx2;;chr2:24331116..24331125,-!p2@Pax8!0.74!4.55!Pax8;;chr11:101646566..101646603,-!p1@Etv4!0.73!15.42!Etv4;;chr11:60036258..60036276,-!p3@Srebf1!0.73!8.09!Srebf1;;chr4:124334894..124334899,+!p1@Pou3f1!0.73!5.81!Pou3f1;;chr1:120524520..120524528,+!p1@Tfcp2l1!0.72!13.39!Tfcp2l1;;chr11:96213434..96213452,+!p@chr11:96213434..96213452,+!0.72!5.81!Hoxb2;;chr11:52096066..52096081,-!p2@Tcf7!0.72!5.31!Tcf7;;chr4:107356135..107356179,-!p1@Dmrtb1!0.72!4.30!Dmrtb1;;chr2:74543103..74543135,+!p4@Hoxd8!0.72!4.30!Hoxd8;;chr4:119406412..119406439,+!p2@Hivep3!0.70!8.59!Hivep3;;chr11:116196664..116196679,-!p1@Foxj1!0.70!6.57!Foxj1;;chr13:72101178..72101203,-!p1@Irx1!0.70!6.57!Irx1;;chr6:52163319..52163342,-!p1@Hoxa3!0.70!6.07!Hoxa3;;chr2:74542974..74542986,+!p5@Hoxd8!0.70!4.04!Hoxd8;;chr19:59534008..59534046,+!p7@Emx2!0.70!4.04!Emx2;;chr1:19199221..19199234,+!p6@Tfap2b!0.70!4.04!Tfap2b;;chr5:120121020..120121049,+!p1@Tbx3!0.69!27.04!Tbx3;;chr17:44872561..44872615,-!p1@Runx2!0.69!9.60!Runx2;;chr16:43508231..43508271,+!p21@Zbtb20!0.68!3.79!Zbtb20;;chr15:37163041..37163061,+!p5@Grhl2!0.68!3.79!Grhl2;;chr16:43619057..43619078,+!p8@Zbtb20!0.67!8.34!Zbtb20;;chr7:148452314..148452329,-!p1@Irf7!0.66!28.56!Irf7;;chr1:194979315..194979359,+!p1@Irf6!0.66!25.02!Irf6;;chr2:9809451..9809469,-!p6@Gata3!0.66!3.54!Gata3;;chr2:74536050..74536065,+!p2@Hoxd9!0.66!3.54!Hoxd9;;chr15:37163065..37163092,+!p4@Grhl2!0.66!3.54!Grhl2;;chr11:85646263..85646278,+!p2@Tbx2!0.64!9.60!Tbx2;;chr11:90250944..90250982,-!p2@Hlf!0.64!6.07!Hlf;;chr5:104121391..104121450,+!p3@Aff1!0.63!19.97!Aff1;;chr4:119406389..119406411,+!p1@Hivep3!0.63!18.95!Hivep3;;chr16:43619156..43619171,+!p16@Zbtb20!0.63!4.55!Zbtb20;;chr6:145813964..145813994,-!p3@Bhlhe41!0.63!4.30!Bhlhe41;;chr5:31271028..31271040,+!p1@Tcf23!0.63!3.29!Tcf23;;chr1:42752654..42752665,+!p@chr1:42752654..42752665,+!0.63!3.29!Pou3f3;;chr12:25257265..25257294,+!p2@Grhl1!0.63!3.29!Grhl1;;chr6:38204109..38204155,-!p1@D630045J12Rik!0.62!19.97!D630045J12Rik;;chr15:76287876..76287894,+!p1@Scx!0.61!19.71!Scx;;chr16:43364012..43364030,+!p22@Zbtb20!0.61!3.03!Zbtb20;;chr1:168168856..168168893,-!p1@Mael!0.61!3.03!Mael;;chr1:19199151..19199170,+!p3@Tfap2b!0.61!3.03!Tfap2b;;chr2:74549915..74549930,+!p6@Hoxd3!0.61!3.03!Hoxd3;;chr16:42907676..42907797,+!p1@Zbtb20!0.59!45.24!Zbtb20;;chr18:36441119..36441158,+!p2@Pura!0.59!8.09!Pura;;chr2:91077034..91077078,-!p2@Ddb2!0.59!7.33!Ddb2;;chr4:58956447..58956510,+!p1@Zkscan16!0.59!7.08!Zkscan16;;chr8:92872177..92872201,-!p2@Tox3!0.59!5.56!Tox3;;chr17:87153505..87153516,+!p6@Epas1!0.59!4.30!Epas1;;chr4:116480137..116480178,-!p1@Toe1!0.58!37.91!Toe1;;chr17:71202822..71202877,-!p3@Tgif1!0.58!9.60!Tgif1;;chr17:87153440..87153451,+!p4@Epas1!0.58!6.57!Epas1;;chr5:65203575..65203589,+!p11@Klf3!0.58!3.54!Klf3;;chr15:102820946..102820961,+!p3@Hoxc8!0.58!2.78!Hoxc8;;chr11:52095821..52095836,-!p3@Tcf7!0.58!2.78!Tcf7;;chr1:19202185..19202187,+!p9@Tfap2b!0.58!2.78!Tfap2b;;chr19:59532915..59532940,+!p5@Emx2!0.58!2.78!Emx2;;chr3:30500978..30501018,+!p1@Mynn!0.57!8.59!Mynn;;chr11:85646427..85646451,+!p4@Tbx2!0.57!5.31!Tbx2;;chr11:90252223..90252240,-!p1@Hlf!0.56!27.29!Hlf;;chr3:94176733..94176794,+!p1@Rorc!0.56!25.52!Rorc;;chr14:22807107..22807119,-!p2@Zfp503!0.56!13.90!Zfp503;;chr4:154010918..154010931,-!p1@Prdm16!0.56!9.10!Prdm16;;chr9:96653072..96653154,-!p1@Zbtb38!0.56!8.34!Zbtb38;;chr5:120121169..120121171,+!p4@Tbx3!0.56!5.31!Tbx3;;chr16:50432467..50432522,-!p1@Bbx!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| ||
Line 44: | Line 45: | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs10490 | |library_id=CNhs10490 | ||
| | |library_id_phase_based=2:CNhs10490 | ||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;58 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;58 | |||
|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/epididymis%252c%2520adult.CNhs10490.58-23B2.mm10.nobarcode.bam | |||
|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/epididymis%252c%2520adult.CNhs10490.58-23B2.mm10.nobarcode.ctss.bed.gz | |||
|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/epididymis%252c%2520adult.CNhs10490.58-23B2.mm9.nobarcode.bam | |||
|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/epididymis%252c%2520adult.CNhs10490.58-23B2.mm9.ctss.bed.gz | |||
|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/epididymis%252c%2520adult.CNhs10490.58-23B2.mm9.nobarcode.rdna.fa.gz | |||
|name=epididymis, adult | |name=epididymis, adult | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 50: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs10490,LSID647,release008,COMPLETED | |profile_hcage=CNhs10490,LSID647,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|repeat_enrich_byfamily=0.225900752196977,0,0.0205375375357429,0,0,0,-0.114300075224827,0,0,0,0,-0.0843392403965415,0,0,0,0,0.088832521355133,0,-0.0142283081723081,0.0978549673988937,0,0,0,0,0.177665042710266,0,0,0.0978549673988937,0,0,0.0489274836994468,0,0.42351235618254,0,0,0,0,0,0.296516361893076,-0.0417740847988257,-0.275021673303798,-0.583442640557297,0.245276996809906,0.0978549673988937,0,0,1.04567146148937,0,0,0,0,0,0,0.54743348218887,0,0.111659495146826,0,0,0,0,0,0,0.0209977033806789,0,0,0,0.161165813361589,-0.13298561462912,-0.158091042771083,0.0184352453809314,0,0.0978549673988937,-0.0460958498631009,0,0.631990945679423,0,0,-0.136537266250296,0.386020267766002,-0.0788315948399074,0,0.0678516497154981,0,0,0,0,-0.0261970633439308,-0.355634212920265,-0.0584402612248952,0.038060587469358,0,0.0978549673988937,0,0 | |repeat_enrich_byfamily=0.225900752196977,0,0.0205375375357429,0,0,0,-0.114300075224827,0,0,0,0,-0.0843392403965415,0,0,0,0,0.088832521355133,0,-0.0142283081723081,0.0978549673988937,0,0,0,0,0.177665042710266,0,0,0.0978549673988937,0,0,0.0489274836994468,0,0.42351235618254,0,0,0,0,0,0.296516361893076,-0.0417740847988257,-0.275021673303798,-0.583442640557297,0.245276996809906,0.0978549673988937,0,0,1.04567146148937,0,0,0,0,0,0,0.54743348218887,0,0.111659495146826,0,0,0,0,0,0,0.0209977033806789,0,0,0,0.161165813361589,-0.13298561462912,-0.158091042771083,0.0184352453809314,0,0.0978549673988937,-0.0460958498631009,0,0.631990945679423,0,0,-0.136537266250296,0.386020267766002,-0.0788315948399074,0,0.0678516497154981,0,0,0,0,-0.0261970633439308,-0.355634212920265,-0.0584402612248952,0.038060587469358,0,0.0978549673988937,0,0 | ||
Line 87: | Line 97: | ||
|top_motifs=AR:6.60361936993;FOXN1:2.27575011503;SREBF1,2:2.08172724102;FOXO1,3,4:1.90596609318;FOXQ1:1.84292236351;LEF1_TCF7_TCF7L1,2:1.79542235012;PAX6:1.51007869594;PAX5:1.43699830329;HLF:1.31328128504;PPARG:1.29910471623;SNAI1..3:1.29219794095;GLI1..3:1.20378686116;ZEB1:1.16590911873;NFIX:1.14917291725;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.11204158213;TBX4,5:1.10532192749;TFAP2{A,C}:0.925358976048;FOX{I1,J2}:0.892047804906;GZF1:0.864007309693;POU3F1..4:0.794989153866;ATF6:0.706891767924;FOXP1:0.653265653152;PAX1,9:0.638583086403;STAT2,4,6:0.616954945551;NR3C1:0.598540799453;NR6A1:0.579421327716;ESR1:0.566304763281;BPTF:0.550568354763;ELK1,4_GABP{A,B1}:0.546598348125;RFX2..5_RFXANK_RFXAP:0.54488715615;NANOG:0.490140245711;POU1F1:0.460680327427;NFIL3:0.458933497453;HIF1A:0.45820084036;RBPJ:0.431713158219;HOX{A5,B5}:0.399783363527;LHX3,4:0.386166712662;ZNF148:0.372760476588;ZIC1..3:0.340203788071;MYBL2:0.332275473496;SP1:0.327184070602;RFX1:0.324225493649;NKX3-2:0.301445141706;RXRA_VDR{dimer}:0.299112473102;HNF1A:0.273712765819;CEBPA,B_DDIT3:0.250248826713;TOPORS:0.227783798725;NFE2L1:0.21139184576;DBP:0.19730496405;HMX1:0.192534691742;NKX3-1:0.184934477274;FOXA2:0.173943193989;ELF1,2,4:0.157119935125;TEAD1:0.13749909802;SPZ1:0.129428329923;IRF7:0.109327399356;TP53:0.097493248338;MYOD1:0.0733161891841;RUNX1..3:0.0668058672243;POU2F1..3:0.0633737027432;ETS1,2:0.0548475151744;GTF2A1,2:0.0372134676418;CRX:0.0188424216006;GFI1:-0.00794167805448;SRF:-0.0240107549495;POU6F1:-0.0326208441912;ADNP_IRX_SIX_ZHX:-0.0350723927816;EBF1:-0.0392460790097;JUN:-0.0451658848694;GCM1,2:-0.0483925341651;BACH2:-0.057232132803;SOX5:-0.0611855382353;PITX1..3:-0.0822902635289;NFY{A,B,C}:-0.0954338817033;IRF1,2:-0.0962834871995;TLX1..3_NFIC{dimer}:-0.11093592362;NKX2-3_NKX2-5:-0.163377183709;ALX4:-0.173757892462;BREu{core}:-0.183687821654;AHR_ARNT_ARNT2:-0.210528159322;TFCP2:-0.224419615392;GFI1B:-0.227668941342;ESRRA:-0.255920780503;STAT1,3:-0.259679829099;HOXA9_MEIS1:-0.261718349471;MYB:-0.269082748238;ATF4:-0.270175429703;NRF1:-0.275206375835;TEF:-0.287333790384;NKX6-1,2:-0.295337477671;CREB1:-0.296252233858;LMO2:-0.306392788569;CDC5L:-0.317835295609;XCPE1{core}:-0.32710111975;PBX1:-0.345189857148;HNF4A_NR2F1,2:-0.350716048854;PAX8:-0.351446711498;FOX{D1,D2}:-0.36136839197;T:-0.383463560618;DMAP1_NCOR{1,2}_SMARC:-0.416835368199;CDX1,2,4:-0.427499414221;TLX2:-0.429616159916;ATF2:-0.433322290547;HSF1,2:-0.446075413717;PRRX1,2:-0.450414817857;TAL1_TCF{3,4,12}:-0.48199956191;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.484412749351;HES1:-0.485625571779;ATF5_CREB3:-0.497987793053;NFKB1_REL_RELA:-0.507995925599;HBP1_HMGB_SSRP1_UBTF:-0.521174076383;TFAP2B:-0.530354240134;EGR1..3:-0.539474426765;HAND1,2:-0.549158632543;NHLH1,2:-0.557940418693;SPIB:-0.560813359963;MYFfamily:-0.561578828089;MAFB:-0.574101127433;HIC1:-0.580847302486;TGIF1:-0.607182142857;ONECUT1,2:-0.613628236141;SOX2:-0.619796625887;ZFP161:-0.625654791836;REST:-0.628164901746;SOX17:-0.62861372699;STAT5{A,B}:-0.643642114349;SMAD1..7,9:-0.658574065359;KLF4:-0.668322610448;ZNF143:-0.668992907751;ZBTB16:-0.676979756939;MED-1{core}:-0.677028368002;SPI1:-0.690935724553;NFATC1..3:-0.70404841931;PDX1:-0.708910904504;NFE2:-0.730005609471;FOS_FOS{B,L1}_JUN{B,D}:-0.737722979721;RXR{A,B,G}:-0.756941021011;GTF2I:-0.770231466994;MEF2{A,B,C,D}:-0.77286835371;OCT4_SOX2{dimer}:-0.797862284408;TBP:-0.805328379584;bHLH_family:-0.836851929585;HOX{A4,D4}:-0.851830249309;EP300:-0.883307306173;PAX2:-0.891303074018;YY1:-0.89972566968;ZNF384:-0.904642030835;FOXD3:-0.912311856469;ZNF423:-0.938677986481;FOX{F1,F2,J1}:-0.948981084754;NR1H4:-0.94901056617;MTE{core}:-0.952915350766;VSX1,2:-0.967632455169;NANOG{mouse}:-0.977372181972;FOSL2:-0.977849010419;MZF1:-0.979878651699;UFEwm:-0.98678740689;ZBTB6:-0.997173106569;GATA6:-0.999996554767;ALX1:-1.00600818201;AIRE:-1.02087588591;PATZ1:-1.0272150542;RREB1:-1.03091629178;IKZF1:-1.03369886434;SOX{8,9,10}:-1.0370168789;GATA4:-1.04894594498;CUX2:-1.08986790782;MTF1:-1.11651708384;PRDM1:-1.13201529329;NR5A1,2:-1.13263458891;MAZ:-1.14910794805;NFE2L2:-1.16307272481;TFAP4:-1.17900034974;ARID5B:-1.24007184178;NKX2-1,4:-1.24422997212;E2F1..5:-1.3185929554;EVI1:-1.36708323142;IKZF2:-1.37233148889;RORA:-1.39720547983;FOXP3:-1.41807442115;PAX4:-1.4180883357;ZNF238:-1.52141007416;TFDP1:-1.65233843372;EN1,2:-1.65725969494;FOXM1:-1.65807214596;NKX2-2,8:-1.75926483225;HMGA1,2:-1.81661916033;POU5F1:-1.93289401835;FOXL1:-2.36961432306 | |top_motifs=AR:6.60361936993;FOXN1:2.27575011503;SREBF1,2:2.08172724102;FOXO1,3,4:1.90596609318;FOXQ1:1.84292236351;LEF1_TCF7_TCF7L1,2:1.79542235012;PAX6:1.51007869594;PAX5:1.43699830329;HLF:1.31328128504;PPARG:1.29910471623;SNAI1..3:1.29219794095;GLI1..3:1.20378686116;ZEB1:1.16590911873;NFIX:1.14917291725;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.11204158213;TBX4,5:1.10532192749;TFAP2{A,C}:0.925358976048;FOX{I1,J2}:0.892047804906;GZF1:0.864007309693;POU3F1..4:0.794989153866;ATF6:0.706891767924;FOXP1:0.653265653152;PAX1,9:0.638583086403;STAT2,4,6:0.616954945551;NR3C1:0.598540799453;NR6A1:0.579421327716;ESR1:0.566304763281;BPTF:0.550568354763;ELK1,4_GABP{A,B1}:0.546598348125;RFX2..5_RFXANK_RFXAP:0.54488715615;NANOG:0.490140245711;POU1F1:0.460680327427;NFIL3:0.458933497453;HIF1A:0.45820084036;RBPJ:0.431713158219;HOX{A5,B5}:0.399783363527;LHX3,4:0.386166712662;ZNF148:0.372760476588;ZIC1..3:0.340203788071;MYBL2:0.332275473496;SP1:0.327184070602;RFX1:0.324225493649;NKX3-2:0.301445141706;RXRA_VDR{dimer}:0.299112473102;HNF1A:0.273712765819;CEBPA,B_DDIT3:0.250248826713;TOPORS:0.227783798725;NFE2L1:0.21139184576;DBP:0.19730496405;HMX1:0.192534691742;NKX3-1:0.184934477274;FOXA2:0.173943193989;ELF1,2,4:0.157119935125;TEAD1:0.13749909802;SPZ1:0.129428329923;IRF7:0.109327399356;TP53:0.097493248338;MYOD1:0.0733161891841;RUNX1..3:0.0668058672243;POU2F1..3:0.0633737027432;ETS1,2:0.0548475151744;GTF2A1,2:0.0372134676418;CRX:0.0188424216006;GFI1:-0.00794167805448;SRF:-0.0240107549495;POU6F1:-0.0326208441912;ADNP_IRX_SIX_ZHX:-0.0350723927816;EBF1:-0.0392460790097;JUN:-0.0451658848694;GCM1,2:-0.0483925341651;BACH2:-0.057232132803;SOX5:-0.0611855382353;PITX1..3:-0.0822902635289;NFY{A,B,C}:-0.0954338817033;IRF1,2:-0.0962834871995;TLX1..3_NFIC{dimer}:-0.11093592362;NKX2-3_NKX2-5:-0.163377183709;ALX4:-0.173757892462;BREu{core}:-0.183687821654;AHR_ARNT_ARNT2:-0.210528159322;TFCP2:-0.224419615392;GFI1B:-0.227668941342;ESRRA:-0.255920780503;STAT1,3:-0.259679829099;HOXA9_MEIS1:-0.261718349471;MYB:-0.269082748238;ATF4:-0.270175429703;NRF1:-0.275206375835;TEF:-0.287333790384;NKX6-1,2:-0.295337477671;CREB1:-0.296252233858;LMO2:-0.306392788569;CDC5L:-0.317835295609;XCPE1{core}:-0.32710111975;PBX1:-0.345189857148;HNF4A_NR2F1,2:-0.350716048854;PAX8:-0.351446711498;FOX{D1,D2}:-0.36136839197;T:-0.383463560618;DMAP1_NCOR{1,2}_SMARC:-0.416835368199;CDX1,2,4:-0.427499414221;TLX2:-0.429616159916;ATF2:-0.433322290547;HSF1,2:-0.446075413717;PRRX1,2:-0.450414817857;TAL1_TCF{3,4,12}:-0.48199956191;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.484412749351;HES1:-0.485625571779;ATF5_CREB3:-0.497987793053;NFKB1_REL_RELA:-0.507995925599;HBP1_HMGB_SSRP1_UBTF:-0.521174076383;TFAP2B:-0.530354240134;EGR1..3:-0.539474426765;HAND1,2:-0.549158632543;NHLH1,2:-0.557940418693;SPIB:-0.560813359963;MYFfamily:-0.561578828089;MAFB:-0.574101127433;HIC1:-0.580847302486;TGIF1:-0.607182142857;ONECUT1,2:-0.613628236141;SOX2:-0.619796625887;ZFP161:-0.625654791836;REST:-0.628164901746;SOX17:-0.62861372699;STAT5{A,B}:-0.643642114349;SMAD1..7,9:-0.658574065359;KLF4:-0.668322610448;ZNF143:-0.668992907751;ZBTB16:-0.676979756939;MED-1{core}:-0.677028368002;SPI1:-0.690935724553;NFATC1..3:-0.70404841931;PDX1:-0.708910904504;NFE2:-0.730005609471;FOS_FOS{B,L1}_JUN{B,D}:-0.737722979721;RXR{A,B,G}:-0.756941021011;GTF2I:-0.770231466994;MEF2{A,B,C,D}:-0.77286835371;OCT4_SOX2{dimer}:-0.797862284408;TBP:-0.805328379584;bHLH_family:-0.836851929585;HOX{A4,D4}:-0.851830249309;EP300:-0.883307306173;PAX2:-0.891303074018;YY1:-0.89972566968;ZNF384:-0.904642030835;FOXD3:-0.912311856469;ZNF423:-0.938677986481;FOX{F1,F2,J1}:-0.948981084754;NR1H4:-0.94901056617;MTE{core}:-0.952915350766;VSX1,2:-0.967632455169;NANOG{mouse}:-0.977372181972;FOSL2:-0.977849010419;MZF1:-0.979878651699;UFEwm:-0.98678740689;ZBTB6:-0.997173106569;GATA6:-0.999996554767;ALX1:-1.00600818201;AIRE:-1.02087588591;PATZ1:-1.0272150542;RREB1:-1.03091629178;IKZF1:-1.03369886434;SOX{8,9,10}:-1.0370168789;GATA4:-1.04894594498;CUX2:-1.08986790782;MTF1:-1.11651708384;PRDM1:-1.13201529329;NR5A1,2:-1.13263458891;MAZ:-1.14910794805;NFE2L2:-1.16307272481;TFAP4:-1.17900034974;ARID5B:-1.24007184178;NKX2-1,4:-1.24422997212;E2F1..5:-1.3185929554;EVI1:-1.36708323142;IKZF2:-1.37233148889;RORA:-1.39720547983;FOXP3:-1.41807442115;PAX4:-1.4180883357;ZNF238:-1.52141007416;TFDP1:-1.65233843372;EN1,2:-1.65725969494;FOXM1:-1.65807214596;NKX2-2,8:-1.75926483225;HMGA1,2:-1.81661916033;POU5F1:-1.93289401835;FOXL1:-2.36961432306 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_mouse;search_select_hide=table111:58-23B2;search_select_hide=table117:58-23B2 | |||
}} | }} |
Latest revision as of 19:18, 4 June 2020
Name: | epididymis, adult |
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Species: | Mouse (Mus musculus) |
Library ID: | CNhs10490 |
Sample type: | developmental |
Genomic View: | UCSC |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
CNhs10490
0 | 0 |
1 | 0 |
10 | 0 |
100 | 0 |
1000 | 0 |
1001 | 0.0774 |
1002 | 0.0663 |
1003 | -0.00448 |
1004 | 0 |
1005 | -0.0389 |
1006 | -0.143 |
1007 | -0.0817 |
1008 | 0 |
1009 | 0.211 |
101 | -0.0713 |
1010 | 0 |
1011 | 0.157 |
1012 | 0 |
1013 | 0.526 |
1014 | -0.0874 |
1015 | -0.125 |
1016 | -0.278 |
1017 | 0 |
1018 | 0.389 |
1019 | 0.0979 |
102 | 0 |
1020 | 0 |
1021 | 0 |
1022 | 0.355 |
1023 | 0 |
1024 | -0.0454 |
1025 | 0 |
1026 | 1.228 |
1027 | -0.048 |
1028 | 0 |
1029 | -0.0498 |
103 | -0.0708 |
1030 | 0 |
1031 | -0.151 |
1032 | 0.178 |
1033 | 0 |
1034 | 0.245 |
1035 | 0 |
1036 | 0.116 |
1037 | 0.0979 |
1038 | 0.00513 |
1039 | 0.00779 |
104 | 0 |
1040 | -0.184 |
1041 | 0.303 |
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10490
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10490
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.299 |
10 | 10 | 0.169 |
100 | 100 | 0.287 |
101 | 101 | 0.56 |
102 | 102 | 0.103 |
103 | 103 | 0.0318 |
104 | 104 | 0.116 |
105 | 105 | 0.684 |
106 | 106 | 0.281 |
107 | 107 | 0.734 |
108 | 108 | 0.353 |
109 | 109 | 0.0322 |
11 | 11 | 0.242 |
110 | 110 | 0.693 |
111 | 111 | 0.00242 |
112 | 112 | 0.00627 |
113 | 113 | 0.0636 |
114 | 114 | 0.0781 |
115 | 115 | 0.737 |
116 | 116 | 0.897 |
117 | 117 | 0.198 |
118 | 118 | 0.512 |
119 | 119 | 0.0205 |
12 | 12 | 0.918 |
120 | 120 | 0.518 |
121 | 121 | 0.436 |
122 | 122 | 0.0973 |
123 | 123 | 0.485 |
124 | 124 | 0.136 |
125 | 125 | 0.4 |
126 | 126 | 0.137 |
127 | 127 | 0.948 |
128 | 128 | 0.256 |
129 | 129 | 0.0926 |
13 | 13 | 3.86869e-5 |
130 | 130 | 0.335 |
131 | 131 | 0.909 |
132 | 132 | 0.607 |
133 | 133 | 0.618 |
134 | 134 | 0.998 |
135 | 135 | 0.789 |
136 | 136 | 0.121 |
137 | 137 | 0.805 |
138 | 138 | 0.262 |
139 | 139 | 0.0414 |
14 | 14 | 0.602 |
140 | 140 | 0.28 |
141 | 141 | 0.8 |
142 | 142 | 0.862 |
143 | 143 | 0.317 |
144 | 144 | 0.201 |
145 | 145 | 0.235 |
146 | 146 | 0.35 |
147 | 147 | 0.892 |
148 | 148 | 0.508 |
149 | 149 | 2.99086e-5 |
15 | 15 | 7.3164e-4 |
150 | 150 | 0.598 |
151 | 151 | 0.4 |
152 | 152 | 0.0734 |
153 | 153 | 0.406 |
154 | 154 | 0.705 |
155 | 155 | 0.759 |
156 | 156 | 0.326 |
157 | 157 | 0.493 |
158 | 158 | 0.214 |
159 | 159 | 0.263 |
160 | 160 | 0.31 |
161 | 161 | 0.305 |
162 | 162 | 0.99 |
163 | 163 | 0.032 |
164 | 164 | 0.0131 |
165 | 165 | 0.00514 |
166 | 166 | 0.376 |
167 | 167 | 0.945 |
168 | 168 | 0.637 |
169 | 169 | 0.00199 |
17 | 17 | 0.182 |
18 | 18 | 0.504 |
19 | 19 | 0.0777 |
2 | 2 | 0.607 |
20 | 20 | 0.479 |
21 | 21 | 0.0694 |
22 | 22 | 0.185 |
23 | 23 | 0.436 |
24 | 24 | 0.0194 |
25 | 25 | 0.673 |
26 | 26 | 0.0144 |
27 | 27 | 0.476 |
28 | 28 | 0.613 |
29 | 29 | 0.0246 |
3 | 3 | 0.29 |
30 | 30 | 0.801 |
31 | 31 | 0.732 |
32 | 32 | 0.915 |
33 | 33 | 0.664 |
34 | 34 | 0.472 |
35 | 35 | 0.848 |
36 | 36 | 0.261 |
37 | 37 | 0.0247 |
38 | 38 | 0.258 |
39 | 39 | 0.085 |
4 | 4 | 0.676 |
40 | 40 | 0.111 |
41 | 41 | 0.713 |
42 | 42 | 0.973 |
43 | 43 | 0.21 |
44 | 44 | 0.0209 |
45 | 45 | 0.328 |
46 | 46 | 0.157 |
47 | 47 | 0.0907 |
48 | 48 | 0.0911 |
49 | 49 | 0.105 |
5 | 5 | 0.287 |
50 | 50 | 0.766 |
51 | 51 | 0.708 |
52 | 52 | 0.833 |
53 | 53 | 0.674 |
54 | 54 | 0.732 |
55 | 55 | 0.0735 |
56 | 56 | 0.803 |
57 | 57 | 0.679 |
58 | 58 | 0.0866 |
59 | 59 | 0.751 |
6 | 6 | 0.0844 |
60 | 60 | 0.155 |
61 | 61 | 0.429 |
62 | 62 | 0.0641 |
63 | 63 | 0.166 |
64 | 64 | 0.532 |
65 | 65 | 0.678 |
66 | 66 | 0.633 |
67 | 67 | 0.719 |
68 | 68 | 0.978 |
69 | 69 | 0.031 |
7 | 7 | 0.128 |
70 | 70 | 0.0049 |
71 | 71 | 0.222 |
72 | 72 | 0.512 |
73 | 73 | 0.0407 |
74 | 74 | 0.429 |
75 | 75 | 0.138 |
76 | 76 | 0.612 |
77 | 77 | 0.568 |
78 | 78 | 0.933 |
79 | 79 | 0.599 |
8 | 8 | 0.315 |
80 | 80 | 0.239 |
81 | 81 | 0.691 |
82 | 82 | 0.0404 |
83 | 83 | 0.424 |
84 | 84 | 0.946 |
85 | 85 | 0.123 |
86 | 86 | 0.233 |
87 | 87 | 0.0319 |
88 | 88 | 0.727 |
89 | 89 | 0.291 |
9 | 9 | 0.95 |
90 | 90 | 0.869 |
91 | 91 | 0.181 |
92 | 92 | 0.216 |
93 | 93 | 0.261 |
94 | 94 | 0.602 |
95 | 95 | 0.172 |
96 | 96 | 0.134 |
97 | 97 | 0.296 |
98 | 98 | 0.237 |
99 | 99 | 0.296 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10490
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000103 mouse sample
FF:0011289 epididymis- adult sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0001301 (epididymis)
0000479 (tissue)
0000058 (duct)
0005156 (reproductive structure)
0000062 (organ)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003135 (male reproductive organ)
0003133 (reproductive organ)
0005904 (duct of male reproductive system)
0004175 (internal genitalia)
0010317 (germ layer / neural crest derived structure)
0003101 (male organism)
0000079 (male reproductive system)
0006947 (male genital duct)
0004054 (internal male genitalia)
FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0011289 (epididymis- adult sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0007297 (presumptive pronephric mesoderm)
UBERON:0010316 (germ layer / neural crest)