FF:11841-124H5: Difference between revisions

Latest revision as of 18:23, 4 June 2020

Name:	serous adenocarcinoma cell line:SK-OV-3-R, biol_rep1
Species:	Human (Homo sapiens)
Library ID:	CNhs13099
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	bone marrow
dev stage	NA
sex	NA
age	NA
cell type	mesenchymal precursor cell
cell line	NA
company	NA
collaboration	Claudio Schneider LNCIB
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005412

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13099		CAGE		DRX008000		DRR008872

Accession ID Hg19

Library id		BAM		CTSS
CNhs13099		DRZ000297		DRZ001682

Accession ID Hg38

Library id		BAM		CTSS
CNhs13099		DRZ011647		DRZ013032

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.389
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.12
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.261
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.0346
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.0172
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.594
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.564
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	-0.00628
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.433
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.388
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.0964
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.291
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.427
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13099

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.199
MA0003.1	MA0003.1	0.138
MA0004.1	MA0004.1	0.548
MA0006.1	MA0006.1	0.274
MA0007.1	MA0007.1	0.0327
MA0009.1	MA0009.1	0.938
MA0014.1	MA0014.1	0.0434
MA0017.1	MA0017.1	0.463
MA0018.2	MA0018.2	0.00573
MA0019.1	MA0019.1	0.849
MA0024.1	MA0024.1	0.257
MA0025.1	MA0025.1	0.264
MA0027.1	MA0027.1	0.639
MA0028.1	MA0028.1	0.791
MA0029.1	MA0029.1	0.385
MA0030.1	MA0030.1	0.0994
MA0031.1	MA0031.1	0.357
MA0035.2	MA0035.2	0.874
MA0038.1	MA0038.1	0.811
MA0039.2	MA0039.2	0.196
MA0040.1	MA0040.1	0.468
MA0041.1	MA0041.1	0.646
MA0042.1	MA0042.1	0.875
MA0043.1	MA0043.1	3.49847e-4
MA0046.1	MA0046.1	0.158
MA0047.2	MA0047.2	0.259
MA0048.1	MA0048.1	0.524
MA0050.1	MA0050.1	2.29659e-6
MA0051.1	MA0051.1	0.0152
MA0052.1	MA0052.1	0.00985
MA0055.1	MA0055.1	0.261
MA0057.1	MA0057.1	0.432
MA0058.1	MA0058.1	0.193
MA0059.1	MA0059.1	0.243
MA0060.1	MA0060.1	0.00196
MA0061.1	MA0061.1	0.459
MA0062.2	MA0062.2	0.465
MA0065.2	MA0065.2	0.0594
MA0066.1	MA0066.1	0.111
MA0067.1	MA0067.1	0.0154
MA0068.1	MA0068.1	5.65768e-4
MA0069.1	MA0069.1	0.792
MA0070.1	MA0070.1	0.934
MA0071.1	MA0071.1	0.31
MA0072.1	MA0072.1	0.676
MA0073.1	MA0073.1	0.482
MA0074.1	MA0074.1	0.328
MA0076.1	MA0076.1	0.446
MA0077.1	MA0077.1	0.3
MA0078.1	MA0078.1	0.221
MA0079.2	MA0079.2	0.159
MA0080.2	MA0080.2	8.18792e-5
MA0081.1	MA0081.1	0.0511
MA0083.1	MA0083.1	0.852
MA0084.1	MA0084.1	0.917
MA0087.1	MA0087.1	0.245
MA0088.1	MA0088.1	0.0128
MA0090.1	MA0090.1	0.829
MA0091.1	MA0091.1	0.963
MA0092.1	MA0092.1	0.509
MA0093.1	MA0093.1	0.418
MA0099.2	MA0099.2	3.76571e-13
MA0100.1	MA0100.1	0.256
MA0101.1	MA0101.1	0.5
MA0102.2	MA0102.2	0.0651
MA0103.1	MA0103.1	0.273
MA0104.2	MA0104.2	0.922
MA0105.1	MA0105.1	2.96607e-5
MA0106.1	MA0106.1	0.0696
MA0107.1	MA0107.1	0.63
MA0108.2	MA0108.2	0.411
MA0111.1	MA0111.1	0.348
MA0112.2	MA0112.2	0.0121
MA0113.1	MA0113.1	0.723
MA0114.1	MA0114.1	0.325
MA0115.1	MA0115.1	0.723
MA0116.1	MA0116.1	3.89612e-4
MA0117.1	MA0117.1	0.555
MA0119.1	MA0119.1	0.0218
MA0122.1	MA0122.1	0.72
MA0124.1	MA0124.1	0.479
MA0125.1	MA0125.1	0.758
MA0131.1	MA0131.1	0.683
MA0135.1	MA0135.1	0.154
MA0136.1	MA0136.1	9.4705e-4
MA0137.2	MA0137.2	0.877
MA0138.2	MA0138.2	0.375
MA0139.1	MA0139.1	0.236
MA0140.1	MA0140.1	0.915
MA0141.1	MA0141.1	0.0198
MA0142.1	MA0142.1	0.284
MA0143.1	MA0143.1	0.42
MA0144.1	MA0144.1	0.621
MA0145.1	MA0145.1	0.485
MA0146.1	MA0146.1	0.948
MA0147.1	MA0147.1	0.401
MA0148.1	MA0148.1	0.841
MA0149.1	MA0149.1	0.0206
MA0150.1	MA0150.1	0.0388
MA0152.1	MA0152.1	0.0724
MA0153.1	MA0153.1	0.0916
MA0154.1	MA0154.1	0.0753
MA0155.1	MA0155.1	0.908
MA0156.1	MA0156.1	0.0192
MA0157.1	MA0157.1	0.914
MA0159.1	MA0159.1	0.0911
MA0160.1	MA0160.1	0.366
MA0162.1	MA0162.1	0.127
MA0163.1	MA0163.1	0.00218
MA0164.1	MA0164.1	0.785
MA0258.1	MA0258.1	0.0601
MA0259.1	MA0259.1	0.236

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13099

Novel motif	Logo	P-value
1	1	0.00923
10	10	0.109
100	100	0.0303
101	101	0.385
102	102	0.845
103	103	0.157
104	104	0.735
105	105	0.783
106	106	0.427
107	107	0.572
108	108	0.659
109	109	0.0663
11	11	0.126
110	110	0.239
111	111	0.358
112	112	0.229
113	113	0.421
114	114	0.158
115	115	0.646
116	116	0.552
117	117	0.137
118	118	0.54
119	119	0.334
12	12	0.627
120	120	0.0527
121	121	0.479
122	122	0.9
123	123	1
124	124	0.0128
125	125	0.113
126	126	0.672
127	127	0.521
128	128	0.86
129	129	0.317
13	13	0.106
130	130	0.827
131	131	0.249
132	132	0.14
133	133	0.0176
134	134	0.544
135	135	0.084
136	136	0.64
137	137	0.811
138	138	0.337
139	139	0.843
14	14	0.906
140	140	0.184
141	141	0.155
142	142	0.678
143	143	0.00472
144	144	0.529
145	145	0.57
146	146	0.832
147	147	0.151
148	148	0.421
149	149	0.433
15	15	0.0144
150	150	0.538
151	151	0.564
152	152	0.316
153	153	0.87
154	154	0.998
155	155	0.687
156	156	0.0388
157	157	0.593
158	158	0.376
159	159	0.252
16	16	0.109
160	160	0.156
161	161	0.604
162	162	0.37
163	163	0.484
164	164	0.231
165	165	0.696
166	166	0.563
167	167	0.0511
168	168	0.749
169	169	0.097
17	17	0.633
18	18	0.1
19	19	0.563
2	2	0.806
20	20	0.91
21	21	0.918
22	22	0.665
23	23	0.317
24	24	0.213
25	25	0.27
26	26	0.0193
27	27	0.507
28	28	0.929
29	29	0.11
3	3	0.13
30	30	0.947
31	31	0.864
32	32	0.924
33	33	0.0152
34	34	0.176
35	35	0.388
36	36	0.0223
37	37	0.164
38	38	0.411
39	39	0.686
4	4	0.144
40	40	0.027
41	41	0.849
42	42	0.176
43	43	0.176
44	44	0.0805
45	45	0.717
46	46	0.021
47	47	0.132
48	48	0.142
49	49	0.103
5	5	0.168
50	50	0.881
51	51	0.682
52	52	0.818
53	53	0.629
54	54	0.88
55	55	0.581
56	56	0.32
57	57	0.172
58	58	0.815
59	59	0.374
6	6	0.656
60	60	0.522
61	61	0.366
62	62	0.278
63	63	0.352
64	64	0.114
65	65	0.818
66	66	1.66553e-4
67	67	0.612
68	68	0.712
69	69	0.408
7	7	0.21
70	70	0.525
71	71	0.0558
72	72	0.988
73	73	0.871
74	74	0.397
75	75	0.23
76	76	0.611
77	77	0.378
78	78	0.453
79	79	0.826
8	8	0.0187
80	80	0.947
81	81	0.172
82	82	0.351
83	83	0.0303
84	84	0.618
85	85	0.45
86	86	0.359
87	87	0.239
88	88	0.785
89	89	0.2
9	9	0.991
90	90	0.516
91	91	0.317
92	92	0.794
93	93	0.407
94	94	0.0308
95	95	0.714
96	96	0.57
97	97	0.792
98	98	0.162
99	99	0.312

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13099

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0103803 serous adenocarcinoma cell line sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000499 (stromal cell)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002149 (epithelial cell of uterus)
0002255 (stromal cell of endometrium)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
193 (reproductive organ cancer)
305 (carcinoma)
120 (female reproductive organ cancer)
299 (adenocarcinoma)
3001 (female reproductive endometrioid cancer)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000995 (uterus)
0002384 (connective tissue)
0003134 (female reproductive organ)
0000479 (tissue)
0005156 (reproductive structure)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003133 (reproductive organ)
0003975 (internal female genitalia)
0004175 (internal genitalia)
0010317 (germ layer / neural crest derived structure)
0003100 (female organism)
0000474 (female reproductive system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0103803 (serous adenocarcinoma cell line sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0100167 (adenocarcinoma cell line sample)
0100658 (uterine adenocarcinoma cell sample)
0101555 (endometrial cancer cell line sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)
CL:0000223 (endodermal cell)
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0005795 (embryonic uterus)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS007893
+|DRA_sample_Accession=CAGE@SAMD00005412
-|accession_numbers=CAGE;DRX008000;DRR008872;DRZ000297;DRZ001682
+|accession_numbers=CAGE;DRX008000;DRR008872;DRZ000297;DRZ001682;DRZ011647;DRZ013032
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000995,UBERON:0002384,UBERON:0003134,UBERON:0000479,UBERON:0005156,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003133,UBERON:0003975,UBERON:0004175,UBERON:0010317,UBERON:0003100,UBERON:0000474
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0000066,CL:0002371,CL:0000499,CL:0000255,CL:0002076,CL:0002149,CL:0002255
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr17:35294075..35294102,+!p1@ENST00000559335!1.90!79.31!LHX1;;chr2:114036488..114036504,-!p1@PAX8!1.85!69.75!PAX8;;chr17:46675558..46675577,-!p2@HOXB6!1.63!42.04!HOXB6;;chr17:46682321..46682362,-!p1@HOXB6!1.57!36.31!HOXB6;;chr17:46622205..46622218,-!p3@HOXB2!1.40!27.71!HOXB2;;chr8:55370487..55370503,+!p1@SOX17!1.38!22.93!SOX17;;chr17:46675420..46675465,-!p3@HOXB6!1.37!25.80!HOXB6;;chr6:10412600..10412637,-!p1@TFAP2A!1.26!28.67!TFAP2A;;chr20:30433396..30433414,-!p1@FOXS1!1.26!17.20!FOXS1;;chr5:134369905..134369972,-!p1@PITX1!1.24!24.84!PITX1;;chr19:3574330..3574393,+!p2@HMG20B!1.24!16.24!HMG20B;;chr17:46688334..46688385,-!p1@HOXB7!1.21!21.98!HOXB7;;chr8:10588010..10588030,-!p1@SOX7!1.21!15.29!SOX7;;chr17:46690839..46690884,-!p1@HOXB8!1.19!14.33!HOXB8;;chr17:46691732..46691766,-!p4@HOXB8!1.10!11.47!HOXB8;;chr8:67874805..67874831,-!p1@TCF24!1.10!11.47!TCF24;;chr17:46622229..46622257,-!p6@HOXB2!1.06!12.42!HOXB2;;chr17:46687935..46687950,-!p3@HOXB7!1.06!10.51!HOXB7;;chr2:176994408..176994492,+!p1@HOXD8!1.06!10.51!HOXD8;;chr3:168865144..168865160,-!p6@MECOM!1.06!10.51!MECOM;;chr17:46687959..46688007,-!p2@HOXB7!1.05!14.33!HOXB7;;chr17:46622440..46622477,-!p5@HOXB2!1.05!11.47!HOXB2;;chr4:4861385..4861398,+!p1@MSX1!1.02!28.67!MSX1;;chr17:36105042..36105060,-!p1@HNF1B!1.02!9.56!HNF1B;;chr8:49833978..49833996,-!p1@SNAI2!0.97!176.77!SNAI2;;chr19:45971246..45971265,+!p1@FOSB!0.95!150.98!FOSB;;chr17:46622070..46622109,-!p1@HOXB2!0.95!18.16!HOXB2;;chr19:22235279..22235301,+!p1@ZNF257!0.95!15.29!ZNF257;;chr19:22817119..22817145,+!p1@ZNF492!0.95!13.38!ZNF492;;chr3:169381183..169381205,-!p4@MECOM!0.94!7.64!MECOM;;chr12:66218598..66218645,+!p2@HMGA2!0.93!36.31!HMGA2;;chr12:77459306..77459365,-!p1@E2F7!0.92!94.60!E2F7;;chr6:34204921..34204939,+!p3@HMGA1!0.91!223.60!HMGA1;;chr12:66218255..66218304,+!p3@HMGA2!0.91!20.07!HMGA2;;chr8:49833948..49833973,-!p2@SNAI2!0.89!44.91!SNAI2;;chr7:63505799..63505904,+!p1@ZNF727!0.89!6.69!ZNF727;;chr17:46675619..46675642,-!p5@HOXB6!0.89!6.69!HOXB6;;chr17:46692624..46692659,-!p3@HOXB8!0.89!6.69!HOXB8;;chr19:22398550..22398579,-!p@chr19:22398550..22398579,-!0.89!6.69!ZNF676;;chr21:38071430..38071456,+!p1@SIM2!0.89!6.69!SIM2;;chr12:85673977..85674015,+!p1@ALX1!0.89!6.69!ALX1;;chr11:65667846..65667868,-!p1@FOSL1!0.88!185.37!FOSL1;;chr20:42295745..42295765,+!p1@MYBL2!0.87!110.84!MYBL2;;chr5:72744594..72744609,-!p1@FOXD1!0.87!30.58!FOXD1;;chr19:56879472..56879529,+!p2@ZNF542!0.87!14.33!ZNF542;;chr3:169381420..169381535,-!p1@MECOM!0.87!7.64!MECOM;;chr12:66218183..66218209,+!p4@HMGA2!0.86!12.42!HMGA2;;chr6:10415276..10415341,-!p2@TFAP2A!0.86!7.64!TFAP2A;;chr19:21106081..21106115,+!p2@ZNF85!0.84!18.16!ZNF85;;chr8:72756063..72756125,-!p1@MSC!0.84!12.42!MSC;;chr12:66218212..66218244,+!p5@HMGA2!0.83!8.60!HMGA2;;chr10:135122868..135122893,+!p3@ZNF511!0.83!5.73!ZNF511;;chr17:46675539..46675551,-!p7@HOXB6!0.83!5.73!HOXB6;;chr22:19748231..19748317,+!p1@TBX1!0.83!5.73!TBX1;;chr2:113982635..113982648,-!p8@PAX8!0.83!5.73!PAX8;;chr3:168864936..168864953,-!p8@MECOM!0.83!5.73!MECOM;;chr9:16705069..16705086,-!p3@BNC2!0.83!5.73!BNC2;;chr6:21597765..21597779,+!p2@SOX4!0.82!48.73!SOX4;;chr6:45390269..45390298,+!p5@RUNX2!0.82!9.56!RUNX2;;chr1:247171316..247171336,-!p3@ZNF695!0.82!8.60!ZNF695;;chr19:21106049..21106072,+!p1@ZNF85!0.81!32.49!ZNF85;;chr17:46622114..46622138,-!p4@HOXB2!0.81!8.60!HOXB2;;chr6:1389789..1389821,+!p1@FOXF2!0.81!7.64!FOXF2;;chr3:193853927..193853944,+!p1@HES1!0.79!185.37!HES1;;chr12:66218836..66218888,+!p1@HMGA2!0.79!52.55!HMGA2;;chr20:42295713..42295738,+!p2@MYBL2!0.79!33.44!MYBL2;;chr20:2673383..2673441,+!p1@EBF4!0.79!8.60!EBF4;;chr6:1612248..1612281,+!p2@FOXC1!0.79!5.73!FOXC1;;chr6:21597514..21597578,+!p4@SOX4!0.77!8.60!SOX4;;chr17:46621101..46621143,-!p7@HOXB2!0.76!6.69!HOXB2;;chr17:46667594..46667619,-!p1@HOXB3!0.76!4.78!HOXB3;;chr17:46667628..46667642,-!p2@HOXB3!0.76!4.78!HOXB3;;chr17:46692318..46692362,-!p5@HOXB8!0.76!4.78!HOXB8;;chr3:168865250..168865272,-!p5@MECOM!0.76!4.78!MECOM;;chr19:38183138..38183157,-!p2@ZNF781!0.76!4.78!ZNF781;;chr19:47523058..47523114,+!p1@NPAS1!0.76!4.78!NPAS1;;chr13:100634031..100634045,+!p1@ZIC2!0.76!4.78!ZIC2;;chr13:73633131..73633149,+!p1@KLF5!0.75!54.47!KLF5;;chr6:1312325..1312340,+!p1@FOXQ1!0.74!7.64!FOXQ1;;chr2:239756671..239756732,+!p1@TWIST2!0.73!15.29!TWIST2;;chr6:45390077..45390105,+!p9@RUNX2!0.73!5.73!RUNX2;;chr14:75745523..75745537,+!p1@FOS!0.72!570.46!FOS;;chr11:65667884..65667895,-!p2@FOSL1!0.72!18.16!FOSL1;;chr2:239756739..239756755,+!p2@TWIST2!0.72!7.64!TWIST2;;chr6:21593973..21593988,+!p1@SOX4!0.71!170.09!SOX4;;chrX:70503529..70503549,+!p2@NONO!0.71!24.84!NONO;;chr6:45296048..45296082,+!p1@RUNX2!0.71!4.78!RUNX2;;chr1:221052776..221052799,+!p1@HLX!0.70!7.64!HLX;;chr6:45390300..45390335,+!p4@RUNX2!0.70!6.69!RUNX2;;chr8:72756667..72756736,-!p2@MSC!0.70!6.69!MSC;;chr3:5021191..5021202,+!p3@BHLHE40!0.69!11.47!BHLHE40;;chr12:96588368..96588394,+!p3@ELK3!0.69!11.47!ELK3;;chr8:60031682..60031710,-!p2@TOX!0.69!6.69!TOX;;chr7:5111723..5111807,+!p2@RBAK!0.68!3.82!RBAK;;chr16:51185172..51185197,-!p1@SALL1!0.68!3.82!SALL1;;chr17:46655578..46655589,-!p4@HOXB4!0.68!3.82!HOXB4;;chr17:46675469..46675481,-!p4@HOXB6!0.68!3.82!HOXB6;;chr17:46692287..46692317,-!p7@HOXB8!0.68!3.82!HOXB8;;chr17:46692457..46692484,-!p2@HOXB8!0.68!3.82!HOXB8;;chr17:46703240..46703257,-!p6@HOXB9!0.68!3.82!HOXB9;;chr19:22469236..22469266,+!p1@ZNF729!0.68!3.82!ZNF729;;chr3:168864831..168864851,-!p9@MECOM!0.68!3.82!MECOM;;chr3:21792631..21792665,-!p3@ZNF385D!0.68!3.82!ZNF385D;;chr19:38183166..38183184,-!p3@ZNF781!0.68!3.82!ZNF781;;chr12:96588219..96588263,+!p2@ELK3!0.67!30.58!ELK3;;chr19:24097706..24097731,+!p2@ZNF726!0.67!7.64!ZNF726;;chr2:238536207..238536290,+!p2@LRRFIP1!0.66!40.13!LRRFIP1;;chr19:20278012..20278034,+!p1@ZNF486!0.66!34.40!ZNF486;;chr19:56879653..56879743,+!p1@ZNF542!0.66!30.58!ZNF542;;chr16:29818160..29818188,+!p6@MAZ!0.66!19.11!MAZ;;chr17:41623692..41623715,-!p1@ETV4!0.66!17.20!ETV4;;chr12:66218443..66218461,+!p8@HMGA2!0.66!4.78!HMGA2;;chr19:20011775..20011800,+!p2@ZNF93!0.65!6.69!ZNF93;;chr13:41593425..41593480,-!p1@ELF1!0.64!24.84!ELF1;;chr9:35732647..35732678,+!p2@CREB3!0.64!21.98!CREB3;;chr19:22034809..22034878,-!p2@ZNF43!0.64!13.38!ZNF43;;chr8:116681409..116681431,-!p2@TRPS1!0.64!10.51!TRPS1;;chr2:71127699..71127744,+!p1@VAX2!0.64!7.64!VAX2;;chr3:5021268..5021282,+!p4@BHLHE40!0.64!7.64!BHLHE40;;chr19:24097675..24097699,+!p1@ZNF726!0.63!12.42!ZNF726;;chr11:61520075..61520136,+!p1@C11orf9!0.63!7.64!C11orf9;;chr6:21597370..21597408,+!p5@SOX4!0.63!5.73!SOX4;;chr6:10412392..10412409,-!p4@TFAP2A!0.63!3.82!TFAP2A;;chr13:73636516..73636532,+!p3@KLF5!0.63!3.82!KLF5;;chr11:46299199..46299233,+!p1@CREB3L1!0.62!19.11!CREB3L1;;chr12:53625966..53626012,-!p2@RARG!0.62!9.56!RARG;;chr20:42543506..42543549,+!p2@TOX2!0.62!8.60!TOX2;;chr5:174151553..174151610,+!p1@MSX2!0.62!5.73!MSX2;;chr10:114710098..114710130,+!p2@TCF7L2!0.61!27.71!TCF7L2;;chr19:23433144..23433204,-!p1@ZNF724P!0.61!16.24!ZNF724P;;chr17:46621937..46621966,-!p2@HOXB2!0.61!9.56!HOXB2;;chr18:51690935..51690957,-!p8@MBD2!0.61!4.78!MBD2;;chr10:64134120..64134183,+!p1@ZNF365!0.61!3.82!ZNF365;;chr8:28243813..28243839,-!p4@ZNF395!0.59!5.73!ZNF395;;chr8:116680833..116680881,-!p7@TRPS1!0.59!4.78!TRPS1;;chr5:72744562..72744573,-!p3@FOXD1!0.59!3.82!FOXD1;;chr5:134369879..134369898,-!p2@PITX1!0.59!2.87!PITX1;;chr6:152126830..152126847,+!p4@ESR1!0.59!2.87!ESR1;;chr6:152128810..152128827,+!p2@ESR1!0.59!2.87!ESR1;;chr6:15245824..15245846,+!p13@JARID2!0.59!2.87!JARID2;;chr6:28321971..28321995,-!p1@ZNF323!0.59!2.87!ZNF323;;chr7:27183263..27183284,-!p2@HOXA5!0.59!2.87!HOXA5;;chr8:123793688..123793703,+!p12@ZHX2!0.59!2.87!ZHX2;;chr10:64134045..64134083,+!p3@ZNF365!0.59!2.87!ZNF365;;chr11:46333934..46333963,+!p5@CREB3L1!0.59!2.87!CREB3L1;;chr13:100634088..100634099,+!p5@ZIC2!0.59!2.87!ZIC2;;chr13:100638100..100638115,+!p4@ZIC2!0.59!2.87!ZIC2;;chr14:37131058..37131139,+!p1@PAX9!0.59!2.87!PAX9;;chr17:41623716..41623727,-!p12@ETV4!0.59!2.87!ETV4;;chr17:46675586..46675600,-!p6@HOXB6!0.59!2.87!HOXB6;;chr17:46806098..46806118,-!p3@HOXB13!0.59!2.87!HOXB13;;chr18:45935720..45935772,-!p1@ZBTB7C!0.59!2.87!ZBTB7C;;chr2:113994209..113994222,-!p11@PAX8!0.59!2.87!PAX8;;chr1:119530493..119530572,-!p1@TBX15!0.59!2.87!TBX15;;chr9:4299638..4299651,-!p8@GLIS3!0.59!2.87!GLIS3;;chr7:28725740..28725778,+!p1@CREB5!0.58!30.58!CREB5;;chr3:71630980..71631110,-!p3@FOXP1!0.58!11.47!FOXP1;;chr19:56879534..56879615,+!p3@ZNF542!0.58!4.78!ZNF542;;chr6:21597431..21597447,+!p8@SOX4!0.58!3.82!SOX4;;chr1:8938709..8938720,-!p3@ENO1!0.57!164.35!ENO1;;chr17:42298615..42298692,-!p2@UBTF!0.57!17.20!UBTF;;chr19:19303619..19303651,+!p2@RFXANK!0.57!12.42!RFXANK;;chr8:37963407..37963454,+!p2@ASH2L!0.57!9.56!ASH2L;;chr19:56904880..56904919,-!p1@ZNF582!0.57!7.64!ZNF582;;chr2:74375058..74375069,-!p3@BOLA3!0.57!5.73!BOLA3;;chr1:151032860..151032918,+!p1@MLLT11!0.56!39.18!MLLT11;;chr12:96588279..96588299,+!p4@ELK3!0.56!15.29!ELK3;;chr7:19157248..19157268,-!p1@TWIST1!0.56!8.60!TWIST1;;chr7:19157043..19157088,-!p2@TWIST1!0.56!7.64!TWIST1;;chr3:168864315..168864339,-!p2@MECOM!0.56!4.78!MECOM;;chr16:29818199..29818216,+!p11@MAZ!0.56!4.78!MAZ;;chr5:137804130..137804156,+!p5@EGR1!0.56!2.87!EGR1;;chr3:5021113..5021180,+!p1@BHLHE40!0.55!225.51!BHLHE40;;chr19:19302931..19302974,-!p1@MEF2BNB-MEF2B,p1@MEF2BNB,p1@MEF2B!0.55!80.27!MEF2B;;chr12:27485785..27485816,+!p1@ARNTL2!0.55!21.98!ARNTL2;;chr3:141087393..141087426,+!p3@ZBTB38!0.55!12.42!ZBTB38;;chr1:59249645..59249656,-!p4@JUN!0.55!7.64!JUN;;chr6:134273586..134273611,+!p5@TBPL1!0.55!2.87!TBPL1;;chr6:31126291..31126399,+!p1@TCF19!0.54!29.62!TCF19;;chr1:35656508..35656584,-!p2@SFPQ!0.54!9.56!SFPQ;;chr19:52956798..52956843,+!p1@ZNF578!0.54!5.73!ZNF578;;chr20:30193083..30193098,+!p1@ID1!0.53!251.31!ID1;;chr5:176738887..176738934,-!p1@MXD3!0.53!20.07!MXD3;;chr19:53758058..53758088,-!p2@ZNF677!0.53!9.56!ZNF677;;chr19:20188776..20188826,+!p1@ZNF90!0.53!7.64!ZNF90;;chr16:54964740..54964789,+!p1@IRX5!0.53!3.82!IRX5;;chr11:4723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@@ Line 40: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/serous%2520adenocarcinoma%2520cell%2520line%253aSK-OV-3-R%252c%2520biol_rep1.CNhs13099.11841-124H5.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/serous%2520adenocarcinoma%2520cell%2520line%253aSK-OV-3-R%252c%2520biol_rep1.CNhs13099.11841-124H5.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/serous%2520adenocarcinoma%2520cell%2520line%253aSK-OV-3-R%252c%2520biol_rep1.CNhs13099.11841-124H5.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/serous%2520adenocarcinoma%2520cell%2520line%253aSK-OV-3-R%252c%2520biol_rep1.CNhs13099.11841-124H5.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/serous%2520adenocarcinoma%2520cell%2520line%253aSK-OV-3-R%252c%2520biol_rep1.CNhs13099.11841-124H5.hg38.nobarcode.ctss.bed.gz
 |id=FF:11841-124H5
 |is_a=EFO:0002091;;FF:0000210;;FF:0103803
 |is_obsolete=
 |library_id=CNhs13099
-|library_ids=CNhs13099
+|library_id_phase_based=2:CNhs13099
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11841
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11841
 |name=serous adenocarcinoma cell line:SK-OV-3-R, biol_rep1
 |namespace=
@@ Line 50: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs13099,LSID1001,release013,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11841-124H5;search_select_hide=table117:FF:11841-124H5
 }}

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FF:11841-124H5: Difference between revisions

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Latest revision as of 18:23, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0