FFCP PHASE1:Mm9::chr13:3610282..3610308,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr13:3610282..3610308,-
|short_description=p2@BC016423
|description=CAGE_peak_2_at_BC016423_5end
|association_with_transcript=45bp_to_ENSMUST00000096069,ENSMUS...") |
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(8 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=105203 | |EntrezGene=105203 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=276 | |||
|TSSclassifier=NA | |||
|UniProt=Q5DTT3,E9PYT9,Q3TAG2 | |UniProt=Q5DTT3,E9PYT9,Q3TAG2 | ||
|association_with_transcript=45bp_to_ENSMUST00000096069,ENSMUST00000110712,NM_134063,uc007pix.1,uc007piy.1_5end | |||
|cluster_id=chr13:3610282..3610308,- | |||
|description=CAGE_peak_2_at_BC016423_5end | |||
|id=chr13:3610282..3610308,- | |||
|ontology_enrichment_celltype=CL:0000542!1.66e-08!13;CL:0000051!1.66e-08!13;CL:0000838!2.88e-08!12;CL:0000084!1.10e-07!11;CL:0000827!1.10e-07!11;CL:0000791!1.61e-07!9;CL:0000789!1.61e-07!9;CL:0002420!1.61e-07!9;CL:0002419!1.61e-07!9;CL:0000790!1.61e-07!9;CL:0000624!7.24e-07!8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,1.66e-08,13;CL:0000051,1.66e-08,13;CL:0000838,2.88e-08,12;CL:0000084,1.10e-07,11;CL:0000827,1.10e-07,11;CL:0000791,1.61e-07,9;CL:0000789,1.61e-07,9;CL:0002420,1.61e-07,9;CL:0002419,1.61e-07,9;CL:0000790,1.61e-07,9;CL:0000624,7.24e-07,8 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003408!4.96e-10!24;UBERON:0002370!1.15e-09!23;UBERON:0000974!1.15e-09!23;UBERON:0004807!1.15e-09!23;UBERON:0005058!1.15e-09!23;UBERON:0003351!1.15e-09!23;UBERON:0009113!1.15e-09!23;UBERON:0003295!1.15e-09!23;UBERON:0009722!1.15e-09!23;UBERON:0005562!1.15e-09!23;UBERON:0007690!1.15e-09!23;UBERON:0006562!3.44e-09!24;UBERON:0001557!3.44e-09!24;UBERON:0001042!3.44e-09!24;UBERON:0008814!3.44e-09!24;UBERON:0009145!3.44e-09!24;UBERON:0004177!8.01e-08!29;UBERON:0001004!1.58e-07!42;UBERON:0000065!3.34e-07!41;UBERON:0004921!4.51e-07!126;UBERON:0004185!4.51e-07!126;UBERON:0005911!7.78e-07!69;UBERON:0001007!9.61e-07!128;UBERON:0001555!9.61e-07!128;UBERON:0007026!9.61e-07!128 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003408,4.96e-10,24;UBERON:0002370,1.15e-09,23;UBERON:0000974,1.15e-09,23;UBERON:0004807,1.15e-09,23;UBERON:0005058,1.15e-09,23;UBERON:0003351,1.15e-09,23;UBERON:0009113,1.15e-09,23;UBERON:0003295,1.15e-09,23;UBERON:0009722,1.15e-09,23;UBERON:0005562,1.15e-09,23;UBERON:0007690,1.15e-09,23;UBERON:0006562,3.44e-09,24;UBERON:0001557,3.44e-09,24;UBERON:0001042,3.44e-09,24;UBERON:0008814,3.44e-09,24;UBERON:0009145,3.44e-09,24;UBERON:0000153,1.57e-08,43;UBERON:0007811,4.02e-08,36;UBERON:0004177,8.01e-08,29;UBERON:0005057,8.01e-08,29;UBERON:0000077,1.08e-07,35;UBERON:0001004,1.58e-07,42;UBERON:0000065,3.34e-07,41;UBERON:0005911,7.77e-07,69 | |||
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| ||
|short_description=p2@BC016423 | |||
}} | }} |
Latest revision as of 13:23, 1 October 2015
Short description: | p2@BC016423 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_BC016423_5end |
Coexpression cluster: | MCL_coexpression_mm9:276 |
Association with transcript: | 45bp_to_ENSMUST00000096069, ENSMUST00000110712, NM_134063, uc007pix.1, uc007piy.1_5end |
EntrezGene: | BC016423 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 1.66e-08 | 13 |
common lymphoid progenitor | 1.66e-08 | 13 |
lymphoid lineage restricted progenitor cell | 2.88e-08 | 12 |
T cell | 1.10e-07 | 11 |
pro-T cell | 1.10e-07 | 11 |
mature alpha-beta T cell | 1.61e-07 | 9 |
alpha-beta T cell | 1.61e-07 | 9 |
immature T cell | 1.61e-07 | 9 |
mature T cell | 1.61e-07 | 9 |
immature alpha-beta T cell | 1.61e-07 | 9 |
CD4-positive, alpha-beta T cell | 7.24e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
gland of gut | 4.96e-10 | 24 |
thymus | 1.15e-09 | 23 |
neck | 1.15e-09 | 23 |
respiratory system epithelium | 1.15e-09 | 23 |
hemolymphoid system gland | 1.15e-09 | 23 |
pharyngeal epithelium | 1.15e-09 | 23 |
thymic region | 1.15e-09 | 23 |
pharyngeal gland | 1.15e-09 | 23 |
entire pharyngeal arch endoderm | 1.15e-09 | 23 |
thymus primordium | 1.15e-09 | 23 |
early pharyngeal endoderm | 1.15e-09 | 23 |
pharynx | 3.44e-09 | 24 |
upper respiratory tract | 3.44e-09 | 24 |
chordate pharynx | 3.44e-09 | 24 |
pharyngeal arch system | 3.44e-09 | 24 |
pharyngeal region of foregut | 3.44e-09 | 24 |
anterior region of body | 1.57e-08 | 43 |
craniocervical region | 4.02e-08 | 36 |
hemopoietic organ | 8.01e-08 | 29 |
immune organ | 8.01e-08 | 29 |
mixed endoderm/mesoderm-derived structure | 1.08e-07 | 35 |
respiratory system | 1.58e-07 | 42 |
respiratory tract | 3.34e-07 | 41 |
endo-epithelium | 7.77e-07 | 69 |