FF:10413-106B8: Difference between revisions

Latest revision as of 13:59, 3 June 2020

Name:	glioma cell line:GI-1
Species:	Human (Homo sapiens)
Library ID:	CNhs10731
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	brain
dev stage	61 year old adult
sex	male
age	61
cell type	glioblast
cell line	GI-1
company	RIKEN Bioresource centre
collaboration	Yukio Nakamura (RIKEN BRC)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005418

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs10731		CAGE		DRX007900		DRR008772

Accession ID Hg19

Library id		BAM		CTSS
CNhs10731		DRZ000197		DRZ001582

Accession ID Hg38

Library id		BAM		CTSS
CNhs10731		DRZ011547		DRZ012932

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.332
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.0418
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.0228
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.11
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.213
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.261
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.231
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.165
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0.11
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.11
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.198
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.11
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.271
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.11
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.111
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10731

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.281
MA0003.1	MA0003.1	0.244
MA0004.1	MA0004.1	0.113
MA0006.1	MA0006.1	0.411
MA0007.1	MA0007.1	0.0122
MA0009.1	MA0009.1	0.188
MA0014.1	MA0014.1	0.605
MA0017.1	MA0017.1	0.0738
MA0018.2	MA0018.2	0.747
MA0019.1	MA0019.1	0.141
MA0024.1	MA0024.1	0.00938
MA0025.1	MA0025.1	0.679
MA0027.1	MA0027.1	0.483
MA0028.1	MA0028.1	8.30508e-4
MA0029.1	MA0029.1	0.478
MA0030.1	MA0030.1	0.685
MA0031.1	MA0031.1	0.383
MA0035.2	MA0035.2	0.646
MA0038.1	MA0038.1	0.00531
MA0039.2	MA0039.2	0.0206
MA0040.1	MA0040.1	0.595
MA0041.1	MA0041.1	0.293
MA0042.1	MA0042.1	0.763
MA0043.1	MA0043.1	0.0674
MA0046.1	MA0046.1	0.311
MA0047.2	MA0047.2	0.716
MA0048.1	MA0048.1	0.048
MA0050.1	MA0050.1	0.28
MA0051.1	MA0051.1	0.209
MA0052.1	MA0052.1	0.169
MA0055.1	MA0055.1	0.311
MA0057.1	MA0057.1	0.422
MA0058.1	MA0058.1	0.0063
MA0059.1	MA0059.1	0.553
MA0060.1	MA0060.1	6.57458e-8
MA0061.1	MA0061.1	0.00213
MA0062.2	MA0062.2	0.0139
MA0065.2	MA0065.2	0.127
MA0066.1	MA0066.1	0.327
MA0067.1	MA0067.1	0.689
MA0068.1	MA0068.1	0.0225
MA0069.1	MA0069.1	0.574
MA0070.1	MA0070.1	0.00162
MA0071.1	MA0071.1	0.773
MA0072.1	MA0072.1	0.957
MA0073.1	MA0073.1	0.768
MA0074.1	MA0074.1	0.634
MA0076.1	MA0076.1	2.42947e-4
MA0077.1	MA0077.1	0.837
MA0078.1	MA0078.1	0.436
MA0079.2	MA0079.2	0.958
MA0080.2	MA0080.2	1.37652e-13
MA0081.1	MA0081.1	0.0323
MA0083.1	MA0083.1	0.147
MA0084.1	MA0084.1	0.763
MA0087.1	MA0087.1	0.292
MA0088.1	MA0088.1	0.648
MA0090.1	MA0090.1	0.473
MA0091.1	MA0091.1	0.303
MA0092.1	MA0092.1	0.0761
MA0093.1	MA0093.1	0.0317
MA0099.2	MA0099.2	1.58421e-5
MA0100.1	MA0100.1	0.305
MA0101.1	MA0101.1	0.0861
MA0102.2	MA0102.2	0.05
MA0103.1	MA0103.1	0.00151
MA0104.2	MA0104.2	0.199
MA0105.1	MA0105.1	0.0016
MA0106.1	MA0106.1	0.598
MA0107.1	MA0107.1	0.024
MA0108.2	MA0108.2	0.019
MA0111.1	MA0111.1	0.563
MA0112.2	MA0112.2	5.44259e-4
MA0113.1	MA0113.1	0.687
MA0114.1	MA0114.1	0.501
MA0115.1	MA0115.1	0.197
MA0116.1	MA0116.1	0.00764
MA0117.1	MA0117.1	0.74
MA0119.1	MA0119.1	0.817
MA0122.1	MA0122.1	0.59
MA0124.1	MA0124.1	0.0788
MA0125.1	MA0125.1	0.657
MA0131.1	MA0131.1	0.846
MA0135.1	MA0135.1	0.528
MA0136.1	MA0136.1	1.34134e-10
MA0137.2	MA0137.2	0.016
MA0138.2	MA0138.2	0.0374
MA0139.1	MA0139.1	0.87
MA0140.1	MA0140.1	0.445
MA0141.1	MA0141.1	0.215
MA0142.1	MA0142.1	0.0332
MA0143.1	MA0143.1	0.876
MA0144.1	MA0144.1	9.42131e-4
MA0145.1	MA0145.1	0.381
MA0146.1	MA0146.1	0.532
MA0147.1	MA0147.1	0.488
MA0148.1	MA0148.1	0.455
MA0149.1	MA0149.1	0.732
MA0150.1	MA0150.1	0.341
MA0152.1	MA0152.1	0.683
MA0153.1	MA0153.1	0.518
MA0154.1	MA0154.1	0.012
MA0155.1	MA0155.1	0.307
MA0156.1	MA0156.1	0.00244
MA0157.1	MA0157.1	0.0932
MA0159.1	MA0159.1	0.0859
MA0160.1	MA0160.1	0.262
MA0162.1	MA0162.1	0.254
MA0163.1	MA0163.1	0.0887
MA0164.1	MA0164.1	0.353
MA0258.1	MA0258.1	0.0377
MA0259.1	MA0259.1	0.843

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10731

Novel motif	Logo	P-value
1	1	0.453
10	10	0.74
100	100	0.965
101	101	0.623
102	102	0.624
103	103	0.252
104	104	0.394
105	105	0.634
106	106	2.36851e-4
107	107	0.193
108	108	0.497
109	109	0.109
11	11	0.312
110	110	0.589
111	111	0.588
112	112	0.0645
113	113	0.071
114	114	0.0179
115	115	0.631
116	116	0.805
117	117	0.389
118	118	0.906
119	119	0.0399
12	12	0.312
120	120	0.799
121	121	0.929
122	122	0.169
123	123	0.396
124	124	0.925
125	125	0.401
126	126	0.217
127	127	0.66
128	128	0.0139
129	129	0.0148
13	13	0.894
130	130	0.148
131	131	0.369
132	132	0.207
133	133	0.0874
134	134	0.988
135	135	0.134
136	136	0.351
137	137	0.534
138	138	0.167
139	139	0.0595
14	14	0.997
140	140	0.977
141	141	0.351
142	142	0.997
143	143	0.0112
144	144	0.891
145	145	0.219
146	146	0.564
147	147	0.858
148	148	0.0898
149	149	0.18
15	15	0.294
150	150	0.562
151	151	0.551
152	152	0.138
153	153	0.997
154	154	0.808
155	155	0.668
156	156	0.739
157	157	0.712
158	158	0.316
159	159	0.614
16	16	0.263
160	160	0.124
161	161	0.214
162	162	0.492
163	163	0.956
164	164	0.417
165	165	0.0136
166	166	0.753
167	167	0.248
168	168	0.933
169	169	0.209
17	17	0.492
18	18	0.75
19	19	0.237
2	2	0.441
20	20	0.811
21	21	0.883
22	22	0.435
23	23	0.0164
24	24	0.99
25	25	0.128
26	26	0.33
27	27	0.211
28	28	0.897
29	29	0.985
3	3	0.714
30	30	0.67
31	31	0.224
32	32	0.153
33	33	0.432
34	34	0.418
35	35	0.803
36	36	0.102
37	37	0.706
38	38	0.125
39	39	0.429
4	4	0.905
40	40	0.139
41	41	0.0509
42	42	0.879
43	43	0.104
44	44	0.191
45	45	0.352
46	46	0.217
47	47	0.995
48	48	0.331
49	49	0.188
5	5	0.37
50	50	0.878
51	51	0.817
52	52	0.0776
53	53	0.757
54	54	0.616
55	55	0.945
56	56	0.882
57	57	0.715
58	58	0.0648
59	59	0.0436
6	6	0.348
60	60	0.0263
61	61	0.857
62	62	0.00157
63	63	0.236
64	64	0.901
65	65	0.0209
66	66	0.0555
67	67	0.84
68	68	0.832
69	69	0.442
7	7	0.229
70	70	0.02
71	71	0.691
72	72	0.576
73	73	0.383
74	74	0.66
75	75	0.923
76	76	0.853
77	77	0.486
78	78	0.0709
79	79	0.368
8	8	0.383
80	80	0.528
81	81	0.631
82	82	0.0193
83	83	0.852
84	84	0.704
85	85	0.115
86	86	0.91
87	87	0.338
88	88	0.78
89	89	0.0608
9	9	0.665
90	90	0.327
91	91	0.364
92	92	0.0759
93	93	0.205
94	94	0.143
95	95	0.439
96	96	0.198
97	97	0.234
98	98	0.0136
99	99	0.909

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs10731

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100711 glioma cell line sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0002319 (neural cell)
0000095 (neuron associated cell)
0000243 (glial cell (sensu Vertebrata))
0000125 (glial cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
3093 (nervous system cancer)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000955 (brain)
0004121 (ectoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100711 (glioma cell line sample)
0100255 (brain cell line sample)
0100690 (brain cancer cell line sample)
0101531 (glial cell line sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000133 (neurectodermal cell)
CL:0000339 (glioblast (sensu Vertebrata))
CL:0000221 (ectodermal cell)
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0006238 (future brain)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS007794
+|DRA_sample_Accession=CAGE@SAMD00005418
-|accession_numbers=CAGE;DRX007900;DRR008772;DRZ000197;DRZ001582
+|accession_numbers=CAGE;DRX007900;DRR008772;DRZ000197;DRZ001582;DRZ011547;DRZ012932
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000955,UBERON:0004121,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0001017,UBERON:0001016
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0002319,CL:0000095,CL:0000243,CL:0000125,CL:0000255
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr7:27153454..27153469,-!p2@HOXA3!1.64!42.48!HOXA3;;chr8:72756637..72756664,-!p3@MSC!1.54!38.43!MSC;;chr2:176969228..176969260,+!p1@HOXD11!1.49!30.05!HOXD11;;chr11:61520075..61520136,+!p1@C11orf9!1.47!58.95!C11orf9;;chr3:12330560..12330579,+!p1@PPARG!1.46!31.78!PPARG;;chr8:40755333..40755352,-!p1@ZMAT4!1.45!27.45!ZMAT4;;chr8:72756667..72756736,-!p2@MSC!1.43!40.45!MSC;;chr7:19157248..19157268,-!p1@TWIST1!1.40!65.88!TWIST1;;chr8:72756063..72756125,-!p1@MSC!1.37!44.79!MSC;;chr7:27183291..27183324,-!p1@HOXA5!1.34!20.80!HOXA5;;chr8:72756267..72756296,-!p4@MSC!1.29!26.87!MSC;;chr2:176969179..176969226,+!p2@HOXD11!1.29!18.49!HOXD11;;chr1:119530493..119530572,-!p1@TBX15!1.26!17.05!TBX15;;chr8:49833978..49833996,-!p1@SNAI2!1.24!331.43!SNAI2;;chr7:27183263..27183284,-!p2@HOXA5!1.24!16.47!HOXA5;;chr8:49833948..49833973,-!p2@SNAI2!1.23!99.98!SNAI2;;chr17:46622114..46622138,-!p4@HOXB2!1.20!22.54!HOXB2;;chrY:21906594..21906622,-!p1@KDM5D!1.19!14.45!KDM5D;;chr7:27183114..27183138,-!p3@HOXA5!1.16!13.58!HOXA5;;chr7:27183191..27183214,-!p4@HOXA5!1.11!11.85!HOXA5;;chrY:2803415..2803468,+!p1@ZFY!1.11!11.85!ZFY;;chr11:46299199..46299233,+!p1@CREB3L1!1.10!59.52!CREB3L1;;chr17:46622070..46622109,-!p1@HOXB2!1.10!26.29!HOXB2;;chr5:134369905..134369972,-!p1@PITX1!1.09!17.34!PITX1;;chr8:72755987..72756002,-!p7@MSC!1.09!11.27!MSC;;chr20:42543441..42543497,+!p1@TOX2!1.05!46.81!TOX2;;chr12:85673977..85674015,+!p1@ALX1!1.05!10.11!ALX1;;chr1:78149041..78149142,-!p1@ZZZ3!1.04!189.84!ZZZ3;;chr7:19157043..19157088,-!p2@TWIST1!1.02!24.27!TWIST1;;chr7:27153428..27153440,-!p3@HOXA3!1.01!9.25!HOXA3;;chr1:158979872..158979898,+!p3@IFI16!1.00!28.32!IFI16;;chr6:10412600..10412637,-!p1@TFAP2A!0.98!14.45!TFAP2A;;chr15:37392094..37392116,-!p6@MEIS2!0.98!10.69!MEIS2;;chr18:19749541..19749557,+!p1@GATA6!0.95!25.72!GATA6;;chr20:42543506..42543549,+!p2@TOX2!0.94!19.07!TOX2;;chr8:37553292..37553317,+!p1@ZNF703!0.93!186.37!ZNF703;;chr7:27142290..27142310,-!p1@HOXA2!0.93!7.51!HOXA2;;chr7:27153613..27153630,-!p6@HOXA3!0.93!7.51!HOXA3;;chr2:223163706..223163730,-!p1@PAX3!0.93!7.51!PAX3;;chr12:26277817..26277863,-!p2@BHLHE41!0.92!10.11!BHLHE41;;chr6:10412392..10412409,-!p4@TFAP2A!0.92!8.38!TFAP2A;;chr3:147111231..147111281,+!p3@ZIC1!0.92!7.22!ZIC1;;chr20:50721803..50721857,-!p2@ZFP64!0.90!11.27!ZFP64;;chr21:38071430..38071456,+!p1@SIM2!0.90!6.93!SIM2;;chr11:125034640..125034655,+!p1@PKNOX2!0.90!6.93!PKNOX2;;chr2:157189180..157189290,-!p1@NR4A2!0.89!36.99!NR4A2;;chr5:72744594..72744609,-!p1@FOXD1!0.89!32.65!FOXD1;;chr8:80679993..80680011,-!p1@HEY1!0.89!10.11!HEY1;;chr3:157823517..157823562,-!p1@SHOX2!0.87!6.93!SHOX2;;chr1:59249645..59249656,-!p4@JUN!0.86!16.47!JUN;;chr3:170076314..170076334,+!p2@SKIL!0.85!8.09!SKIL;;chr3:147111198..147111225,+!p4@ZIC1!0.85!6.07!ZIC1;;chr5:134369879..134369898,-!p2@PITX1!0.85!6.07!PITX1;;chr7:27183141..27183152,-!p6@HOXA5!0.85!6.07!HOXA5;;chr1:59165724..59165751,-!p1@MYSM1!0.84!143.32!MYSM1;;chr8:77593474..77593612,+!p1@ZFHX4!0.84!26.87!ZFHX4;;chr1:164528616..164528660,+!p5@PBX1!0.84!12.71!PBX1;;chr8:72756213..72756243,-!p5@MSC!0.84!7.80!MSC;;chr15:37390850..37390909,-!p3@MEIS2!0.83!11.85!MEIS2;;chr14:29235961..29236008,+!p1@FOXG1!0.83!5.78!FOXG1;;chr3:114343768..114343822,-!p1@ZBTB20!0.82!26.29!ZBTB20;;chr2:172967621..172967637,-!p1@DLX2!0.81!15.60!DLX2;;chr5:72744445..72744466,-!p2@FOXD1!0.81!9.54!FOXD1;;chr18:19749386..19749404,+!p2@GATA6!0.81!8.09!GATA6;;chr1:164528410..164528428,+!p1@PBX1!0.80!43.05!PBX1;;chr7:42276787..42276815,-!p1@GLI3!0.80!15.03!GLI3;;chr1:170633348..170633399,+!p2@PRRX1!0.80!7.51!PRRX1;;chr8:72756023..72756055,-!p6@MSC!0.80!6.65!MSC;;chr12:26277956..26277980,-!p1@BHLHE41!0.79!19.94!BHLHE41;;chr1:158979851..158979865,+!p5@IFI16!0.79!12.14!IFI16;;chr6:45296048..45296082,+!p1@RUNX2!0.79!6.07!RUNX2;;chr8:72756380..72756427,-!p8@MSC!0.79!5.20!MSC;;chr8:77593448..77593471,+!p2@ZFHX4!0.79!5.20!ZFHX4;;chr1:119530636..119530653,-!p2@TBX15!0.79!5.20!TBX15;;chr21:38071403..38071428,+!p2@SIM2!0.79!5.20!SIM2;;chr20:50179368..50179392,-!p2@NFATC2!0.78!6.65!NFATC2;;chr19:50432453..50432468,+!p1@ATF5!0.77!302.53!ATF5;;chr6:45390002..45390023,+!p6@RUNX2!0.77!8.96!RUNX2;;chr15:76629123..76629151,+!p1@ISL2!0.77!5.49!ISL2;;chr16:51185172..51185197,-!p1@SALL1!0.77!4.91!SALL1;;chr12:77459306..77459365,-!p1@E2F7!0.76!66.17!E2F7;;chr15:37392724..37392757,-!p1@MEIS2!0.76!23.98!MEIS2;;chr18:22932080..22932170,-!p1@ZNF521!0.75!21.38!ZNF521;;chr17:59477233..59477263,+!p1@TBX2!0.74!15.31!TBX2;;chr1:200379104..200379128,-!p2@ZNF281!0.74!11.85!ZNF281;;chr3:12329397..12329433,+!p2@PPARG!0.74!10.98!PPARG;;chr11:46299539..46299620,+!p2@CREB3L1!0.74!8.09!CREB3L1;;chr18:19749517..19749531,+!p3@GATA6!0.73!8.38!GATA6;;chr2:172949484..172949522,+!p1@DLX1!0.73!4.33!DLX1;;chr2:172950227..172950249,+!p2@DLX1!0.73!4.33!DLX1;;chr6:28321909..28321965,-!p3@ZNF323!0.73!4.33!ZNF323;;chr7:19156632..19156652,-!p3@TWIST1!0.73!4.33!TWIST1;;chr7:27153590..27153608,-!p7@HOXA3!0.73!4.33!HOXA3;;chr1:164528445..164528459,+!p2@PBX1!0.72!14.45!PBX1;;chr17:46621937..46621966,-!p2@HOXB2!0.72!12.42!HOXB2;;chr5:158526917..158526932,-!p1@EBF1!0.71!11.27!EBF1;;chr1:164528687..164528711,+!p6@PBX1!0.71!4.91!PBX1;;chr1:78148324..78148365,-!p2@ZZZ3!0.70!43.34!ZZZ3;;chr21:36421535..36421610,-!p2@RUNX1!0.70!15.89!RUNX1;;chr17:46655730..46655791,-!p1@HOXB4!0.70!10.98!HOXB4;;chr8:128750175..128750201,+!p8@MYC!0.70!7.51!MYC;;chr7:27179814..27179840,-!p4@HOXA3!0.70!4.05!HOXA3;;chr2:5832508..5832524,+!p1@SOX11!0.70!4.05!SOX11;;chr2:8822176..8822196,+!p1@ID2!0.69!633.09!ID2;;chr1:151032860..151032918,+!p1@MLLT11!0.69!52.59!MLLT11;;chr15:37392616..37392638,-!p2@MEIS2!0.69!13.58!MEIS2;;chr1:151032922..151032951,+!p2@MLLT11!0.69!6.93!MLLT11;;chr20:39317868..39317884,-!p1@MAFB!0.68!51.43!MAFB;;chr7:138666053..138666146,-!p1@KIAA1549!0.68!17.91!KIAA1549;;chr8:28347737..28347785,-!p1@FBXO16,p2@ZNF395!0.68!8.96!ZNF395;;chr2:176969097..176969109,+!p3@HOXD11!0.68!3.76!HOXD11;;chr4:111558135..111558198,-!p2@PITX2!0.68!3.76!PITX2;;chr4:174450089..174450153,-!p2@HAND2!0.68!3.76!HAND2;;chr1:164528942..164528964,+!p11@PBX1!0.68!3.76!PBX1;;chr11:125034605..125034636,+!p2@PKNOX2!0.68!3.76!PKNOX2;;chr14:37131058..37131139,+!p1@PAX9!0.68!3.76!PAX9;;chr19:45971246..45971265,+!p1@FOSB!0.67!79.75!FOSB;;chr1:158979792..158979814,+!p2@IFI16!0.67!40.45!IFI16;;chr1:78149157..78149168,-!p4@ZZZ3!0.67!4.33!ZZZ3;;chr1:23696308..23696339,-!p2@ZNF436!0.66!8.38!ZNF436;;chr19:42788636..42788660,+!p1@CIC!0.66!6.36!CIC;;chr7:17338266..17338282,+!p1@AHR!0.65!43.63!AHR;;chr3:71630980..71631110,-!p3@FOXP1!0.65!13.87!FOXP1;;chr3:168864315..168864339,-!p2@MECOM!0.65!6.07!MECOM;;chr15:80696703..80696754,+!p1@ARNT2!0.65!4.91!ARNT2;;chr2:102091566..102091581,-!p1@RFX8!0.65!3.47!RFX8;;chr1:119530857..119530884,-!p4@TBX15!0.65!3.47!TBX15;;chr12:56414795..56414836,+!p4@IKZF4!0.65!3.47!IKZF4;;chr19:53636125..53636178,-!p1@ZNF415!0.64!10.69!ZNF415;;chr19:20188776..20188826,+!p1@ZNF90!0.64!10.11!ZNF90;;chr6:45390025..45390076,+!p2@RUNX2!0.64!8.96!RUNX2;;chr19:20011775..20011800,+!p2@ZNF93!0.64!6.65!ZNF93;;chr1:158985493..158985535,+!p4@IFI16!0.64!5.49!IFI16;;chr15:37390374..37390422,-!p9@MEIS2!0.64!4.33!MEIS2;;chr3:169381420..169381535,-!p1@MECOM!0.64!4.05!MECOM;;chr20:306489..306564,+!p1@SOX12!0.63!42.19!SOX12;;chr1:211433275..211433335,+!p2@RCOR3!0.63!11.56!RCOR3;;chr1:164528911..164528940,+!p7@PBX1!0.63!5.20!PBX1;;chr12:54694758..54694805,-!p1@NFE2!0.63!4.05!NFE2;;chr17:70117153..70117174,+!p1@SOX9!0.62!39.30!SOX9;;chr2:208030647..208030689,-!p1@KLF7!0.62!31.21!KLF7;;chr8:37553261..37553282,+!p2@ZNF703!0.62!28.90!ZNF703;;chr19:20011744..20011770,+!p1@ZNF93!0.62!14.16!ZNF93;;chr9:16870659..16870675,-!p2@BNC2!0.62!4.05!BNC2;;chr6:28321971..28321995,-!p1@ZNF323!0.62!3.18!ZNF323;;chr6:45390137..45390148,+!p12@RUNX2!0.62!3.18!RUNX2;;chr8:49834430..49834446,-!p5@SNAI2!0.62!3.18!SNAI2;;chr8:72756194..72756208,-!p9@MSC!0.62!3.18!MSC;;chr3:147111505..147111529,+!p6@ZIC1!0.62!3.18!ZIC1;;chr4:174451370..174451387,-!p1@HAND2!0.62!3.18!HAND2;;chr9:102584262..102584276,+!p1@NR4A3!0.61!7.80!NR4A3;;chr17:46655704..46655718,-!p2@HOXB4!0.61!4.91!HOXB4;;chr12:26277929..26277955,-!p3@BHLHE41!0.61!4.62!BHLHE41;;chr2:121493425..121493474,+!p1@GLI2!0.60!7.51!GLI2;;chr10:64134120..64134183,+!p1@ZNF365!0.60!3.76!ZNF365;;chr8:80680024..80680046,-!p2@HEY1!0.60!3.47!HEY1;;chr7:64838786..64838809,+!p2@ZNF92!0.59!19.94!ZNF92;;chr7:150945754..150945789,-!p2@SMARCD3!0.59!10.40!SMARCD3;;chr3:12329358..12329393,+!p3@PPARG!0.59!8.09!PPARG;;chr2:166326200..166326216,+!p1@CSRNP3!0.59!4.62!CSRNP3;;chr2:102091144..102091183,-!p2@RFX8!0.59!2.89!RFX8;;chr11:32457075..32457095,-!p1@WT1!0.59!2.89!WT1;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!0.59!2.89!SEBOX;;chr7:27153443..27153450,-!p8@HOXA3!0.59!2.89!HOXA3;;chr8:72756522..72756533,-!p13@MSC!0.59!2.89!MSC;;chr8:93115274..93115323,-!p4@RUNX1T1!0.59!2.89!RUNX1T1;;chr19:53289995..53290050,-!p1@ZNF600!0.58!13.87!ZNF600;;chr6:28411241..28411284,-!p1@ZSCAN23!0.58!10.40!ZSCAN23;;chr9:114287433..114287513,+!p1@ZNF483!0.58!8.38!ZNF483;;chr20:2673383..2673441,+!p1@EBF4!0.58!4.91!EBF4;;chr7:6655225..6655279,+!p1@ENST00000457543!0.58!4.62!ZNF853;;chr17:46688334..46688385,-!p1@HOXB7!0.58!4.33!HOXB7;;chr7:64467057..64467078,-!p1@ZNF117!0.57!62.99!ZNF117;;chr13:41593425..41593480,-!p1@ELF1!0.57!21.09!ELF1;;chr1:153940354..153940395,+!p1@CREB3L4!0.57!13.29!CREB3L4;;chr17:59477197..59477212,+!p2@TBX2!0.57!5.20!TBX2;;chr1:164528588..164528610,+!p8@PBX1!0.57!4.62!PBX1;;chr15:37390482..37390572,-!p7@MEIS2!0.57!4.05!MEIS2;;chr17:7590797..7590815,-!p1@TP53!0.56!143.32!TP53;;chr17:17740287..17740307,-!p1@SREBF1!0.56!87.55!SREBF1;;chr12:133707204..133707236,+!p1@ZNF10,p2@ZNF268!0.56!18.20!ZNF10;;chr16:79633894..79633954,-!p3@MAF!0.56!5.78!MAF;;chr1:247171347..247171366,-!p2@ZNF695!0.56!5.49!ZNF695;;chr17:59477275..59477286,+!p3@TBX2!0.56!3.76!TBX2;;chr7:27183156..27183167,-!p8@HOXA5!0.56!2.60!HOXA5;;chr8:72756251..72756262,-!p12@MSC!0.56!2.60!MSC;;chr3:157824001..157824078,-!p2@SHOX2!0.56!2.60!SHOX2;;chr9:16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@@ Line 41: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/glioma%2520cell%2520line%253aGI-1.CNhs10731.10413-106B8.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/glioma%2520cell%2520line%253aGI-1.CNhs10731.10413-106B8.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/glioma%2520cell%2520line%253aGI-1.CNhs10731.10413-106B8.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/glioma%2520cell%2520line%253aGI-1.CNhs10731.10413-106B8.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/glioma%2520cell%2520line%253aGI-1.CNhs10731.10413-106B8.hg38.nobarcode.ctss.bed.gz
 |id=FF:10413-106B8
 |is_a=EFO:0002091;;FF:0000210;;FF:0100711
 |is_obsolete=
 |library_id=CNhs10731
-|library_id_phase_based=1:CNhs10731
+|library_id_phase_based=2:CNhs10731
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10413
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10413
 |name=glioma cell line:GI-1
 |namespace=FANTOM5
@@ Line 51: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs10731,LSID691,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10413-106B8;search_select_hide=table117:FF:10413-106B8
 }}

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FF:10413-106B8: Difference between revisions

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Latest revision as of 13:59, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0