FF:10417-106C3: Difference between revisions

Latest revision as of 14:00, 3 June 2020

Name:	papillotubular adenocarcinoma cell line:TGBC18TKB
Species:	Human (Homo sapiens)
Library ID:	CNhs10734
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	duodenum
dev stage	79 year old adult
sex	female
age	79
cell type	unclassifiable
cell line	TGBC18TKB
company	RIKEN Bioresource centre
collaboration	Yukio Nakamura (RIKEN BRC)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005399

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs10734		CAGE		DRX007982		DRR008854

Accession ID Hg19

Library id		BAM		CTSS
CNhs10734		DRZ000279		DRZ001664

Accession ID Hg38

Library id		BAM		CTSS
CNhs10734		DRZ011629		DRZ013014

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0423
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.312
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.0599
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.00826
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.0215
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.0992
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.00215
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.128
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.234
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.55
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0.0599
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.0536
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.0599
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0.159
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.0599
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0155
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.102
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.195
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.202
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.0599
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10734

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.493
MA0003.1	MA0003.1	0.814
MA0004.1	MA0004.1	0.997
MA0006.1	MA0006.1	0.0739
MA0007.1	MA0007.1	0.385
MA0009.1	MA0009.1	0.176
MA0014.1	MA0014.1	0.0741
MA0017.1	MA0017.1	0.0505
MA0018.2	MA0018.2	0.0647
MA0019.1	MA0019.1	0.632
MA0024.1	MA0024.1	0.0202
MA0025.1	MA0025.1	0.0557
MA0027.1	MA0027.1	0.821
MA0028.1	MA0028.1	0.02
MA0029.1	MA0029.1	0.523
MA0030.1	MA0030.1	9.3441e-5
MA0031.1	MA0031.1	0.00271
MA0035.2	MA0035.2	0.0274
MA0038.1	MA0038.1	0.133
MA0039.2	MA0039.2	0.0015
MA0040.1	MA0040.1	0.163
MA0041.1	MA0041.1	0.952
MA0042.1	MA0042.1	0.749
MA0043.1	MA0043.1	0.0575
MA0046.1	MA0046.1	3.65549e-4
MA0047.2	MA0047.2	0.0017
MA0048.1	MA0048.1	0.85
MA0050.1	MA0050.1	8.54814e-4
MA0051.1	MA0051.1	6.51867e-4
MA0052.1	MA0052.1	0.459
MA0055.1	MA0055.1	0.00528
MA0057.1	MA0057.1	0.894
MA0058.1	MA0058.1	0.991
MA0059.1	MA0059.1	0.854
MA0060.1	MA0060.1	0.0949
MA0061.1	MA0061.1	0.314
MA0062.2	MA0062.2	0.0163
MA0065.2	MA0065.2	0.882
MA0066.1	MA0066.1	0.921
MA0067.1	MA0067.1	0.803
MA0068.1	MA0068.1	0.22
MA0069.1	MA0069.1	0.933
MA0070.1	MA0070.1	0.55
MA0071.1	MA0071.1	0.227
MA0072.1	MA0072.1	0.511
MA0073.1	MA0073.1	0.617
MA0074.1	MA0074.1	0.985
MA0076.1	MA0076.1	0.0715
MA0077.1	MA0077.1	0.0952
MA0078.1	MA0078.1	0.684
MA0079.2	MA0079.2	0.156
MA0080.2	MA0080.2	0.776
MA0081.1	MA0081.1	0.0942
MA0083.1	MA0083.1	0.815
MA0084.1	MA0084.1	0.567
MA0087.1	MA0087.1	0.533
MA0088.1	MA0088.1	0.181
MA0090.1	MA0090.1	0.0119
MA0091.1	MA0091.1	0.00472
MA0092.1	MA0092.1	0.124
MA0093.1	MA0093.1	0.946
MA0099.2	MA0099.2	1.13843e-9
MA0100.1	MA0100.1	0.925
MA0101.1	MA0101.1	0.0952
MA0102.2	MA0102.2	0.33
MA0103.1	MA0103.1	1.19672e-8
MA0104.2	MA0104.2	0.464
MA0105.1	MA0105.1	0.127
MA0106.1	MA0106.1	0.494
MA0107.1	MA0107.1	0.0606
MA0108.2	MA0108.2	0.259
MA0111.1	MA0111.1	0.706
MA0112.2	MA0112.2	0.422
MA0113.1	MA0113.1	0.24
MA0114.1	MA0114.1	0.0811
MA0115.1	MA0115.1	0.507
MA0116.1	MA0116.1	0.0607
MA0117.1	MA0117.1	0.389
MA0119.1	MA0119.1	0.921
MA0122.1	MA0122.1	0.27
MA0124.1	MA0124.1	0.255
MA0125.1	MA0125.1	0.0648
MA0131.1	MA0131.1	0.973
MA0135.1	MA0135.1	0.795
MA0136.1	MA0136.1	0.797
MA0137.2	MA0137.2	0.232
MA0138.2	MA0138.2	0.00613
MA0139.1	MA0139.1	0.831
MA0140.1	MA0140.1	0.457
MA0141.1	MA0141.1	0.263
MA0142.1	MA0142.1	0.452
MA0143.1	MA0143.1	0.393
MA0144.1	MA0144.1	0.171
MA0145.1	MA0145.1	0.0681
MA0146.1	MA0146.1	0.0197
MA0147.1	MA0147.1	0.619
MA0148.1	MA0148.1	0.00386
MA0149.1	MA0149.1	0.162
MA0150.1	MA0150.1	0.529
MA0152.1	MA0152.1	0.093
MA0153.1	MA0153.1	3.07851e-4
MA0154.1	MA0154.1	0.657
MA0155.1	MA0155.1	0.486
MA0156.1	MA0156.1	0.435
MA0157.1	MA0157.1	0.33
MA0159.1	MA0159.1	0.27
MA0160.1	MA0160.1	0.654
MA0162.1	MA0162.1	0.977
MA0163.1	MA0163.1	0.00861
MA0164.1	MA0164.1	0.928
MA0258.1	MA0258.1	0.757
MA0259.1	MA0259.1	0.373

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10734

Novel motif	Logo	P-value
1	1	0.434
10	10	0.908
100	100	0.928
101	101	0.0737
102	102	0.56
103	103	0.165
104	104	0.875
105	105	0.632
106	106	0.368
107	107	0.877
108	108	0.788
109	109	0.279
11	11	0.172
110	110	0.758
111	111	0.259
112	112	0.308
113	113	0.24
114	114	0.119
115	115	0.456
116	116	0.154
117	117	0.0207
118	118	0.931
119	119	0.65
12	12	0.564
120	120	0.631
121	121	0.289
122	122	0.354
123	123	0.855
124	124	0.0194
125	125	0.244
126	126	0.834
127	127	0.965
128	128	0.105
129	129	0.236
13	13	0.0816
130	130	0.64
131	131	0.0709
132	132	0.394
133	133	0.125
134	134	0.499
135	135	0.0183
136	136	0.0881
137	137	0.112
138	138	0.0936
139	139	0.205
14	14	0.878
140	140	0.244
141	141	0.042
142	142	0.765
143	143	0.0145
144	144	0.11
145	145	0.804
146	146	0.361
147	147	0.576
148	148	0.831
149	149	0.344
15	15	0.647
150	150	0.245
151	151	0.552
152	152	0.0165
153	153	0.311
154	154	0.488
155	155	0.913
156	156	0.33
157	157	0.429
158	158	0.316
159	159	0.246
16	16	0.83
160	160	0.49
161	161	0.302
162	162	0.56
163	163	0.922
164	164	0.987
165	165	0.892
166	166	0.26
167	167	0.627
168	168	0.958
169	169	0.135
17	17	0.443
18	18	0.0414
19	19	0.25
2	2	0.83
20	20	0.0896
21	21	0.794
22	22	0.738
23	23	0.705
24	24	0.918
25	25	0.748
26	26	0.737
27	27	0.485
28	28	0.5
29	29	0.858
3	3	0.534
30	30	0.151
31	31	0.219
32	32	4.06977e-5
33	33	0.0571
34	34	0.66
35	35	0.00335
36	36	0.972
37	37	0.642
38	38	0.529
39	39	0.865
4	4	0.563
40	40	0.423
41	41	0.0949
42	42	0.942
43	43	0.151
44	44	0.348
45	45	0.255
46	46	0.182
47	47	0.546
48	48	0.617
49	49	0.176
5	5	0.394
50	50	0.192
51	51	0.767
52	52	0.447
53	53	0.833
54	54	0.927
55	55	0.788
56	56	0.711
57	57	0.706
58	58	0.789
59	59	0.544
6	6	0.357
60	60	0.618
61	61	0.254
62	62	0.317
63	63	0.287
64	64	0.362
65	65	0.98
66	66	0.317
67	67	0.359
68	68	0.0365
69	69	0.294
7	7	0.646
70	70	0.911
71	71	0.371
72	72	0.752
73	73	0.0106
74	74	0.0323
75	75	0.389
76	76	0.842
77	77	0.425
78	78	0.0324
79	79	0.276
8	8	0.0909
80	80	0.601
81	81	0.00459
82	82	7.7262e-4
83	83	0.367
84	84	0.897
85	85	0.254
86	86	0.779
87	87	0.0677
88	88	0.684
89	89	0.442
9	9	0.554
90	90	0.186
91	91	0.104
92	92	0.337
93	93	0.847
94	94	0.036
95	95	0.0637
96	96	0.556
97	97	0.383
98	98	0.0574
99	99	0.76

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs10734

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
DOID:3119 gastrointestinal system cancer
DOID:4929 tubular adenocarcinoma
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100167 adenocarcinoma cell line sample
UBERON:0004913 hepatopancreatic ampulla

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)
299 (adenocarcinoma)
3119 (gastrointestinal system cancer)
4929 (tubular adenocarcinoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002108 (small intestine)
0000160 (intestine)
0002394 (bile duct)
0004913 (hepatopancreatic ampulla)
0000058 (duct)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0004111 (anatomical conduit)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0004921 (subdivision of digestive tract)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003703 (extrahepatic bile duct)
0003928 (digestive system duct)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0002114 (duodenum)
0005409 (gastrointestinal system)
0002294 (biliary system)
0001173 (biliary tree)
0002423 (hepatobiliary system)
0001174 (common bile duct)
0004914 (duodenal papilla)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0100167 (adenocarcinoma cell line sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS007876
+|DRA_sample_Accession=CAGE@SAMD00005399
-|accession_numbers=CAGE;DRX007982;DRR008854;DRZ000279;DRZ001664
+|accession_numbers=CAGE;DRX007982;DRR008854;DRZ000279;DRZ001664;DRZ011629;DRZ013014
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002108,UBERON:0000160,UBERON:0002394,UBERON:0004913,UBERON:0000058,UBERON:0001007,UBERON:0004119,UBERON:0011216,UBERON:0000062,UBERON:0004111,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0004921,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003703,UBERON:0003928,UBERON:0010317,UBERON:0001555,UBERON:0002114,UBERON:0005409,UBERON:0002294,UBERON:0001173,UBERON:0002423,UBERON:0001174,UBERON:0004914
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr11:34642612..34642646,+!p1@EHF!2.65!448.74!EHF;;chr6:1312325..1312340,+!p1@FOXQ1!2.52!530.36!FOXQ1;;chr1:201979743..201979762,+!p1@ELF3!2.06!114.14!ELF3;;chr3:111314186..111314204,-!p1@ZBED2!2.05!110.60!ZBED2;;chr17:46682321..46682362,-!p1@HOXB6!1.87!73.34!HOXB6;;chr11:34535332..34535347,-!p2@ELF5!1.80!62.10!ELF5;;chr11:61520075..61520136,+!p1@C11orf9!1.79!125.53!C11orf9;;chr12:66218255..66218304,+!p3@HMGA2!1.70!126.71!HMGA2;;chr11:34535297..34535317,-!p1@ELF5!1.69!48.20!ELF5;;chr12:66218598..66218645,+!p2@HMGA2!1.60!172.55!HMGA2;;chr17:38020392..38020477,-!p1@IKZF3!1.59!37.70!IKZF3;;chr1:201979703..201979721,+!p2@ELF3!1.59!37.56!ELF3;;chr8:102504651..102504683,+!p1@GRHL2!1.50!30.31!GRHL2;;chr1:209979467..209979494,-!p1@IRF6!1.49!33.56!IRF6;;chr14:38064429..38064486,-!p1@FOXA1!1.49!30.16!FOXA1;;chr11:34642656..34642667,+!p2@EHF!1.48!29.28!EHF;;chr19:45971246..45971265,+!p1@FOSB!1.47!509.07!FOSB;;chr6:10415484..10415508,-!p3@TFAP2A!1.47!28.24!TFAP2A;;chr11:34645791..34645836,+!p3@EHF!1.46!27.94!EHF;;chr12:66218003..66218018,+!p9@HMGA2!1.45!32.97!HMGA2;;chr21:36421535..36421610,-!p2@RUNX1!1.42!88.57!RUNX1;;chr6:10415276..10415341,-!p2@TFAP2A!1.42!30.46!TFAP2A;;chr3:12330560..12330579,+!p1@PPARG!1.42!28.98!PPARG;;chr17:70117153..70117174,+!p1@SOX9!1.39!231.99!SOX9;;chr11:65554528..65554546,+!p1@OVOL1!1.37!22.33!OVOL1;;chr20:56195474..56195506,-!p1@ZBP1!1.35!21.44!ZBP1;;chr13:73633131..73633149,+!p1@KLF5!1.34!214.39!KLF5;;chr12:66218183..66218209,+!p4@HMGA2!1.34!39.48!HMGA2;;chr12:66218212..66218244,+!p5@HMGA2!1.34!30.01!HMGA2;;chr8:10588010..10588030,-!p1@SOX7!1.31!19.52!SOX7;;chr3:111314230..111314241,-!p2@ZBED2!1.31!19.22!ZBED2;;chr19:45908292..45908374,-!p1@PPP1R13L!1.30!164.86!PPP1R13L;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.26!17.00!ZBED1;;chr17:46655704..46655718,-!p2@HOXB4!1.25!25.14!HOXB4;;chr17:46622440..46622477,-!p5@HOXB2!1.25!18.93!HOXB2;;chr7:99680193..99680204,-!p2@ZNF3!1.23!15.97!ZNF3;;chr15:67418119..67418162,+!p5@SMAD3!1.22!17.15!SMAD3;;chr7:27153454..27153469,-!p2@HOXA3!1.22!15.52!HOXA3;;chr6:1312155..1312187,+!p2@FOXQ1!1.21!15.23!FOXQ1;;chr6:126240380..126240430,+!p2@NCOA7!1.20!37.85!NCOA7;;chr6:34524093..34524135,-!p1@SPDEF!1.18!14.19!SPDEF;;chr2:157189180..157189290,-!p1@NR4A2!1.17!71.71!NR4A2;;chr19:12551785..12551823,-!p1@ZNF443!1.17!22.03!ZNF443;;chr12:66218836..66218888,+!p1@HMGA2!1.16!125.97!HMGA2;;chr17:46687959..46688007,-!p2@HOXB7!1.14!17.59!HOXB7;;chr7:99156249..99156311,+!p1@ZNF655!1.13!281.22!ZNF655;;chr3:114343768..114343822,-!p1@ZBTB20!1.13!55.00!ZBTB20;;chr12:66218573..66218596,+!p7@HMGA2!1.13!18.63!HMGA2;;chr6:10413188..10413249,-!p7@TFAP2A!1.13!12.42!TFAP2A;;chr15:67418047..67418093,+!p4@SMAD3!1.12!15.52!SMAD3;;chr17:46675558..46675577,-!p2@HOXB6!1.12!12.12!HOXB6;;chr6:34204672..34204692,+!p1@HMGA1!1.10!1299.65!HMGA1;;chr8:22550982..22550999,-!p1@EGR3!1.10!32.97!EGR3;;chr3:114343826..114343869,-!p4@ZBTB20!1.10!23.07!ZBTB20;;chr11:65667884..65667895,-!p2@FOSL1!1.09!43.91!FOSL1;;chr12:96588219..96588263,+!p2@ELK3!1.08!80.29!ELK3;;chr7:99613212..99613236,+!p1@ZKSCAN1!1.07!372.15!ZKSCAN1;;chr17:46688334..46688385,-!p1@HOXB7!1.07!15.67!HOXB7;;chr17:46703687..46703740,-!p1@HOXB9!1.07!10.65!HOXB9;;chr12:52445218..52445237,+!p1@NR4A1!1.04!128.49!NR4A1;;chr15:67357924..67357952,+!p2@SMAD3!1.04!67.72!SMAD3;;chr7:99613250..99613264,+!p2@ZKSCAN1!1.04!29.72!ZKSCAN1;;chr12:27485762..27485776,+!p3@ARNTL2!1.04!27.06!ARNTL2;;chr17:74137321..74137337,-!p1@FOXJ1!1.04!9.91!FOXJ1;;chr7:100076765..100076861,-!p1@TSC22D4!1.03!335.04!TSC22D4;;chr6:106534192..106534224,+!p1@PRDM1!1.03!27.50!PRDM1;;chr7:99679324..99679368,-!p1@ZNF3!1.02!134.25!ZNF3;;chr19:12476443..12476467,-!p1@ZNF442!1.02!15.82!ZNF442;;chr2:61108808..61108821,+!p3@REL!1.02!12.12!REL;;chr11:65554563..65554576,+!p2@OVOL1!1.02!9.46!OVOL1;;chr12:66218378..66218401,+!p6@HMGA2!1.01!14.34!HMGA2;;chr14:75988771..75988826,+!p1@BATF!1.01!12.27!BATF;;chr3:170076314..170076334,+!p2@SKIL!1.01!12.12!SKIL;;chr6:126240442..126240459,+!p4@NCOA7!1.00!11.53!NCOA7;;chr2:172967621..172967637,-!p1@DLX2!0.99!23.80!DLX2;;chr2:121493425..121493474,+!p1@GLI2!0.99!19.52!GLI2;;chr3:168864315..168864339,-!p2@MECOM!0.99!14.49!MECOM;;chr6:34524025..34524045,-!p3@SPDEF!0.99!8.87!SPDEF;;chr3:141087339..141087387,+!p2@ZBTB38!0.98!89.45!ZBTB38;;chr9:4300050..4300118,-!p1@GLIS3!0.96!55.15!GLIS3;;chr17:41623692..41623715,-!p1@ETV4!0.96!35.49!ETV4;;chr6:15246200..15246214,+!p2@JARID2!0.96!23.07!JARID2;;chr2:73520667..73520683,-!p1@EGR4!0.96!8.13!EGR4;;chr7:99613237..99613248,+!p3@ZKSCAN1!0.95!17.15!ZKSCAN1;;chr17:41622765..41622821,-!p2@ETV4!0.95!12.27!ETV4;;chr6:34524049..34524089,-!p2@SPDEF!0.95!7.84!SPDEF;;chr1:2985760..2985774,+!p1@PRDM16!0.95!7.84!PRDM16;;chr6:21597765..21597779,+!p2@SOX4!0.94!64.76!SOX4;;chr6:106534230..106534254,+!p2@PRDM1!0.94!19.81!PRDM1;;chr17:38256822..38256851,-!p1@NR1D1!0.93!61.36!NR1D1;;chr7:64838786..64838809,+!p2@ZNF92!0.93!44.36!ZNF92;;chr3:141087393..141087426,+!p3@ZBTB38!0.93!31.20!ZBTB38;;chr12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X!0.24!93.74!MAX;;chr2:37458692..37458745,-!p1@CEBPZ!0.24!59.73!CEBPZ;;chr2:169312725..169312810,+!p1@CERS6!0.24!38.29!CERS6;;chr2:48541789..48541874,+!p1@FOXN2!0.24!34.89!FOXN2;;chr19:52772832..52772861,+!p1@ZNF766!0.24!15.52!ZNF766;;chr19:53400852..53400962,-!p1@ZNF320!0.24!15.23!ZNF320;;chr6:157098775..157098820,+!p1@ARID1B!0.24!12.86!ARID1B;;chr11:67007477..67007493,+!p2@KDM2A!0.24!12.86!KDM2A;;chr11:76092097..76092183,-!p1@PRKRIR!0.24!12.12!PRKRIR;;chr18:72265084..72265143,+!p1@ZNF407!0.24!11.24!ZNF407;;chr12:3068544..3068597,+!p1@TEAD4!0.24!8.87!TEAD4;;chr6:151712673..151712709,-!p1@ZBTB2!0.24!8.43!ZBTB2;;chr13:41635512..41635539,-!p2@ELF1!0.24!8.13!ELF1;;chr16:67596498..67596520,+!p2@CTCF!0.24!5.03!CTCF;;chr9:129622904..129622956,+!p1@ZBTB34!0.24!4.88!ZBTB34;;chr6:12011943..12012015,+!p2@HIVEP1!0.24!4.29!HIVEP1;;chr16:67596384..67596411,+!p3@CTCF!0.24!3.10!CTCF;;chr1:8763296..8763339,-!p9@RERE!0.24!3.10!RERE;;chr3:44754126..44754171,+!p1@ZNF502!0.24!3.10!ZNF502;;chr7:99102267..99102304,+!p2@ZKSCAN5!0.24!2.96!ZKSCAN5;;chr11:58346585..58346607,+!p2@ZFP91!0.24!2.96!ZFP91;;chr1:151319654..151319698,-!p2@RFX5!0.24!2.66!RFX5;;chr6:7108179..7108199,+!p4@RREB1!0.24!2.37!RREB1;;chr12:122516678..122516687,+!p3@MLXIP!0.24!2.22!MLXIP;;chr18:77867121..77867138,+!p2@ADNP2!0.24!2.07!ADNP2;;chr8:67525524..67525543,-!p3@MYBL1!0.24!1.77!MYBL1;;chr9:110252074..110252079,-!p3@KLF4!0.24!1.77!KLF4;;chr9:35732312..35732324,+!p4@CREB3!0.24!1.77!CREB3;;chr9:32550965..32551031,-!p4@TOPORS!0.24!1.63!TOPORS;;chr11:6947647..6947698,+!p2@ZNF215!0.24!1.33!ZNF215;;chr6:45390343..45390388,+!p10@RUNX2!0.24!1.33!RUNX2;;chr1:33004996..33005017,+!p3@ZBTB8A!0.24!1.33!ZBTB8A;;chr19:50431973..50431998,+!p5@ATF5!0.24!1.18!ATF5;;chr14:75746722..75746777,+!p2@FOS!0.24!1.18!FOS;;chr4:81104958..81104981,+!p5@PRDM8!0.24!1.03!PRDM8;;chr5:92918860..92918871,+!p10@NR2F1!0.24!0.89!NR2F1;;chr6:134273586..134273611,+!p5@TBPL1!0.24!0.89!TBPL1;;chr6:10412576..10412599,-!p5@TFAP2A!0.24!0.74!TFAP2A;;chr6:1312688..1312701,+!p3@FOXQ1!0.24!0.74!FOXQ1;;chr6:1389824..1389840,+!p3@FOXF2!0.24!0.74!FOXF2;;chr7:138666186..138666213,-!p2@KIAA1549!0.24!0.74!KIAA1549;;chr15:90294087..90294115,-!p1@MESP1!0.24!0.74!MESP1;;chr15:96869165..96869183,+!p20@NR2F2!0.24!0.74!NR2F2;;chr16:86612149..86612161,+!p2@FOXL1!0.24!0.74!FOXL1;;chr17:38020481..38020506,-!p7@IKZF3!0.24!0.74!IKZF3;;chr17:38256872..38256874,-!p10@NR1D1!0.24!0.74!NR1D1;;chr17:38501500..38501517,+!p13@RARA!0.24!0.74!RARA;;chr17:41622982..41623001,-!p11@ETV4!0.24!0.74!ETV4;;chr17:46675608..46675618,-!p10@HOXB6!0.24!0.74!HOXB6;;chr18:56532079..56532095,+!p8@ZNF532!0.24!0.74!ZNF532;;chr19:45977697..45977713,+!p4@FOSB!0.24!0.74!FOSB;;chr19:52408192..52408200,-!p4@ZNF649!0.24!0.74!ZNF649;;chr1:2461692..2461710,-!p1@HES5!0.24!0.74!HES5;;chr1:3569135..3569150,+!p3@TP73!0.24!0.74!TP73;;chr1:42801540..42801562,-!p4@FOXJ3!0.24!0.74!FOXJ3;;chr20:50418972..50419029,-!p1@SALL4!0.24!0.74!SALL4;;chr21:36421401..36421414,-!p16@RUNX1!0.24!0.74!RUNX1;;chr2:10091783..10091811,+!p2@GRHL1!0.24!0.74!GRHL1;;chr2:70165961..70165981,+!p8@MXD1!0.24!0.74!MXD1;;chr3:114477832..114477843,-!p25@ZBTB20!0.24!0.74!ZBTB20;;chr3:114819101..114819121,-!p7@ZBTB20!0.24!0.74!ZBTB20;;chr4:109089901..109089930,-!p3@LEF1!0.24!0.74!LEF1;;chr10:45495946..45495976,+!p2@ZNF22!0.24!0.74!ZNF22;;chr11:129245780..129245785,+!p5@BARX2!0.24!0.74!BARX2;;chr11:2292226..2292270,-!p1@ASCL2!0.24!0.74!ASCL2;;chr11:31832207..31832226,-!p12@PAX6!0.24!0.74!PAX6;;chr11:34645764..34645775,+!p9@EHF!0.24!0.74!EHF;;chr12:11802957..11802964,+!p8@ETV6!0.24!0.74!ETV6;;chr12:125003168..125003180,-!p15@NCOR2!0.24!0.74!NCOR2;;chr12:54378864..54378884,+!p6@HOXC10!0.24!0.74!HOXC10;;chr12:54379915..54379935,+!p8@HOXC10!0.24!0.74!HOXC10;;chr12:66218413..66218418,+!p17@HMGA2!0.24!0.74!HMGA2;;
@@ Line 41: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/papillotubular%2520adenocarcinoma%2520cell%2520line%253aTGBC18TKB.CNhs10734.10417-106C3.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/papillotubular%2520adenocarcinoma%2520cell%2520line%253aTGBC18TKB.CNhs10734.10417-106C3.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/papillotubular%2520adenocarcinoma%2520cell%2520line%253aTGBC18TKB.CNhs10734.10417-106C3.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/papillotubular%2520adenocarcinoma%2520cell%2520line%253aTGBC18TKB.CNhs10734.10417-106C3.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/papillotubular%2520adenocarcinoma%2520cell%2520line%253aTGBC18TKB.CNhs10734.10417-106C3.hg38.nobarcode.ctss.bed.gz
 |id=FF:10417-106C3
 |is_a=DOID:3119;;DOID:4929;;EFO:0002091;;FF:0000210;;FF:0100167;;UBERON:0004913
 |is_obsolete=
 |library_id=CNhs10734
-|library_id_phase_based=1:CNhs10734
+|library_id_phase_based=2:CNhs10734
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10417
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10417
 |name=papillotubular adenocarcinoma cell line:TGBC18TKB
 |namespace=FANTOM5
@@ Line 51: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs10734,LSID691,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10417-106C3;search_select_hide=table117:FF:10417-106C3
 }}

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FF:10417-106C3: Difference between revisions

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Latest revision as of 14:00, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0