UBERON:0001897: Difference between revisions
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|is_obsolete= | |is_obsolete= | ||
|located_in= | |located_in= | ||
|name=thalamus | |name=dorsal plus ventral thalamus | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0010225 | |part_of=UBERON:0010225 | ||
Latest revision as of 17:22, 12 September 2014
| Name: | dorsal plus ventral thalamus | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "A midline paired symmetrical structure within the brains of vertebrates, including humans. It is situated between the cerebral cortex and midbrain, both in terms of location and neurological connections. Its function includes relaying sensation, special sense and motor signals to the cerebral cortex, along with the regulation of consciousness, sleep and alertness. The thalamus surrounds the third ventricle. It is the main product of the embryonic diencephalon." [Wikipedia:Thalamus] | ||
| Xrefs: |
| ||
| Synonyms: |
"dorsal thalamus" RELATED [FMA:62007] "dorsal thalamus (anthoney)" EXACT [FMA:62007] "thalamus dorsalis" RELATED LATIN [Wikipedia:Thalamus] "thalamus dorsalis" RELATED [BTO:0001365] | ||
| Comments: | AO notes: MA and ZFA think there is a distinct dorsal thalamus, but FMA says its an exact synonym. FMA has a distinct class for thalamic complex. | ||
| Alt_id: | UBERON:FMA_62007-MA_0000179-MIAA_0000109-ZFA_0001215 | ||
| Subset: |
uberon_slim vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0002784(regional part of diencephalon),UBERON:0015212(lateral structure) |
|---|---|
| part_of: | UBERON:0010225(thalamic complex) |
Children
| is a: | FF:10366-105F6 (thalamus, newborn, donor10223),FF:10370-105G1 (thalamus, adult, donor10258) |
|---|---|
| derives from: | FF:0010154 (human thalamus - adult donor sample) |
| part of: | UBERON:0001899 (epithalamus) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10154-103A1 (thalamus, adult, donor10252)
- 10168-103B6 (thalamus - adult, donor10196)
- 10366-105F6 (thalamus, newborn, donor10223)
- 10370-105G1 (thalamus, adult, donor10258)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001897 (dorsal plus ventral thalamus), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 4.61e-131 | FFCP PHASE1:Hg19::chr2:198530770..198530773,-#_567a74e018288d8684baf3757e5f3ce5 | p@chr2:198530770..198530773, - |
| 4.61e-131 | FFCP PHASE2:Hg19::chr2:198530770..198530773,-#_567a74e018288d8684baf3757e5f3ce5 | p@chr2:198530770..198530773, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chrX:140890284..140890288,+#_13f95d81d65ad5d5990bab3e0389384e | p@chrX:140890284..140890288, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chrX:140890284..140890288,+#_13f95d81d65ad5d5990bab3e0389384e | p@chrX:140890284..140890288, + |
| 1.05e-79 | FFCP PHASE1:Hg19::chr9:108129231..108129235,+#_4d5325952c82fe485cb04a5e15486013 | p@chr9:108129231..108129235, + |
| 1.05e-79 | FFCP PHASE2:Hg19::chr9:108129231..108129235,+#_4d5325952c82fe485cb04a5e15486013 | p@chr9:108129231..108129235, + |
| 1.45e-66 | FFCP PHASE1:Hg19::chr10:681520..681525,-#_a57cc756c6d8f8b09aa280295f0a6767 | p@chr10:681520..681525, - |
| 1.45e-66 | FFCP PHASE2:Hg19::chr10:681520..681525,-#_a57cc756c6d8f8b09aa280295f0a6767 | p@chr10:681520..681525, - |
| 5.53e-66 | FFCP PHASE1:Hg19::chr2:201599836..201599844,-#_eaf635fd29c2fd073d914ca4601347f5 | p3@LOC100507140 |
| 5.53e-66 | FFCP PHASE2:Hg19::chr2:201599836..201599844,-#_eaf635fd29c2fd073d914ca4601347f5 | p3@LOC100507140 |
| 1.13e-57 | FFCP PHASE2:Hg19::chr17:70890496..70890500,-#_5fdca351ac8b6a7493b17e6ef6a38c06 | p@chr17:70890496..70890500, - |
| 1.13e-57 | FFCP PHASE1:Hg19::chr17:70890496..70890500,-#_5fdca351ac8b6a7493b17e6ef6a38c06 | p@chr17:70890496..70890500, - |
| 1.51e-57 | FFCP PHASE2:Hg19::chr17:36605118..36605121,+#_ccad051a9d73981ec78810414c645a31 | p@chr17:36605118..36605121, + |
| 1.51e-57 | FFCP PHASE1:Hg19::chr17:36605118..36605121,+#_ccad051a9d73981ec78810414c645a31 | p@chr17:36605118..36605121, + |
| 4.77e-57 | FFCP PHASE2:Hg19::chr6:97520453..97520454,+#_88ad06a4e761491b84e6a80fc59374ea | p@chr6:97520453..97520454, + |
| 4.77e-57 | FFCP PHASE1:Hg19::chr6:97520453..97520454,+#_88ad06a4e761491b84e6a80fc59374ea | p@chr6:97520453..97520454, + |
| 6.36e-57 | FFCP PHASE2:Hg19::chr3:133487652..133487656,+#_ffe62bc7b862b5ee900240bd8c325616 | p@chr3:133487652..133487656, + |
| 6.36e-57 | FFCP PHASE2:Hg19::chr21:41300975..41300984,+#_ffe62bc7b862b5ee900240bd8c325616 | p@chr21:41300975..41300984, + |
| 6.36e-57 | FFCP PHASE1:Hg19::chr3:133487652..133487656,+#_ffe62bc7b862b5ee900240bd8c325616 | p@chr3:133487652..133487656, + |
| 6.36e-57 | FFCP PHASE1:Hg19::chr21:41300975..41300984,+#_ffe62bc7b862b5ee900240bd8c325616 | p@chr21:41300975..41300984, + |
| 8.82e-51 | FFCP PHASE2:Hg19::chr1:201476057..201476070,+#_99e3c7cf1409355323303c297d421cd2 | p4@ENST00000454651 |
| 8.82e-51 | FFCP PHASE1:Hg19::chr1:201476057..201476070,+#_99e3c7cf1409355323303c297d421cd2 | p4@ENST00000454651 |
| 8.82e-51 | FFCP PHASE2:Hg19::chr17:73865552..73865562,+#_99e3c7cf1409355323303c297d421cd2 | p@chr17:73865552..73865562, + |
| 8.82e-51 | FFCP PHASE1:Hg19::chr17:73865552..73865562,+#_99e3c7cf1409355323303c297d421cd2 | p@chr17:73865552..73865562, + |
| 1.88e-50 | FFCP PHASE2:Hg19::chr8:23127683..23127694,+#_ba19c25f4a65a96c446c81ac0d6a05be | p8@R3HCC1 |
| 1.88e-50 | FFCP PHASE2:Hg19::chr6:134605007..134605011,-#_ba19c25f4a65a96c446c81ac0d6a05be | p@chr6:134605007..134605011, - |
| 1.88e-50 | FFCP PHASE1:Hg19::chr6:134605007..134605011,-#_ba19c25f4a65a96c446c81ac0d6a05be | p@chr6:134605007..134605011, - |
| 1.88e-50 | FFCP PHASE1:Hg19::chr8:23127683..23127694,+#_ba19c25f4a65a96c446c81ac0d6a05be | p8@R3HCC1 |
| 2.74e-50 | FFCP PHASE2:Hg19::chr10:114886533..114886542,+#_179758f4c485a23f743100570227f85f | p48@TCF7L2 |
| 2.74e-50 | FFCP PHASE1:Hg19::chr10:114886533..114886542,+#_179758f4c485a23f743100570227f85f | p48@TCF7L2 |
| 2.74e-50 | FFCP PHASE2:Hg19::chr19:35788742..35788752,+#_179758f4c485a23f743100570227f85f | p@chr19:35788742..35788752, + |
| 2.74e-50 | FFCP PHASE1:Hg19::chr19:35788742..35788752,+#_179758f4c485a23f743100570227f85f | p@chr19:35788742..35788752, + |
| 4.0e-50 | FFCP PHASE2:Hg19::chr14:36367182..36367189,+#_a8f535089f21bb083b32da9e6d567c5d | p5@ENST00000550089 |
| 4.0e-50 | FFCP PHASE1:Hg19::chr14:36367182..36367189,+#_a8f535089f21bb083b32da9e6d567c5d | p5@ENST00000550089 |
| 4.52e-50 | FFCP PHASE2:Hg19::chr6:143858194..143858197,+#_fcf4307e83c2efa247ea14c29c922763 | p@chr6:143858194..143858197, + |
| 4.52e-50 | FFCP PHASE1:Hg19::chr11:123502025..123502039,-#_fcf4307e83c2efa247ea14c29c922763 | p22@SCN3B |
| 4.52e-50 | FFCP PHASE1:Hg19::chr6:143858194..143858197,+#_fcf4307e83c2efa247ea14c29c922763 | p@chr6:143858194..143858197, + |
| 4.52e-50 | FFCP PHASE2:Hg19::chr11:123502025..123502039,-#_fcf4307e83c2efa247ea14c29c922763 | p22@SCN3B |
| 4.52e-50 | FFCP PHASE2:Hg19::chrX:1481635..1481645,-#_fcf4307e83c2efa247ea14c29c922763 | p@chrX:1481635..1481645, - |
| 4.52e-50 | FFCP PHASE1:Hg19::chrX:134232704..134232705,-#_fcf4307e83c2efa247ea14c29c922763 | p4@LINC00087 |
| 4.52e-50 | FFCP PHASE2:Hg19::chr4:56229918..56229919,-#_fcf4307e83c2efa247ea14c29c922763 | p@chr4:56229918..56229919, - |
| 4.52e-50 | FFCP PHASE1:Hg19::chr3:155011771..155011808,-#_fcf4307e83c2efa247ea14c29c922763 | p1@ENST00000489090 |
| 4.52e-50 | FFCP PHASE1:Hg19::chrX:1481635..1481645,-#_fcf4307e83c2efa247ea14c29c922763 | p@chrX:1481635..1481645, - |
| 4.52e-50 | FFCP PHASE2:Hg19::chr7:107883711..107883718,-#_fcf4307e83c2efa247ea14c29c922763 | p29@NRCAM |
| 4.52e-50 | FFCP PHASE1:Hg19::chr7:107883711..107883718,-#_fcf4307e83c2efa247ea14c29c922763 | p29@NRCAM |
| 4.52e-50 | FFCP PHASE2:Hg19::chr3:155011771..155011808,-#_fcf4307e83c2efa247ea14c29c922763 | p1@ENST00000489090 |
| 4.52e-50 | FFCP PHASE1:Hg19::chr4:56229918..56229919,-#_fcf4307e83c2efa247ea14c29c922763 | p@chr4:56229918..56229919, - |
| 4.52e-50 | FFCP PHASE2:Hg19::chrX:134232704..134232705,-#_fcf4307e83c2efa247ea14c29c922763 | p4@LINC00087 |
| 8.5e-50 | FFCP PHASE2:Hg19::chr5:132111925..132111938,+#_ce1b05003bd77eecc48f00e2d34acc01 | p@chr5:132111925..132111938, + |
| 8.5e-50 | FFCP PHASE1:Hg19::chr5:132111925..132111938,+#_ce1b05003bd77eecc48f00e2d34acc01 | p@chr5:132111925..132111938, + |
| 1.09e-49 | FFCP PHASE1:Hg19::chr4:159175135..159175146,+#_f1145dac3b1bc551f23f36960e47dccc | p@chr4:159175135..159175146, + |
| 1.09e-49 | FFCP PHASE2:Hg19::chr18:74692038..74692048,+#_f1145dac3b1bc551f23f36960e47dccc | p@chr18:74692038..74692048, + |
| 1.09e-49 | FFCP PHASE1:Hg19::chr18:74692038..74692048,+#_f1145dac3b1bc551f23f36960e47dccc | p@chr18:74692038..74692048, + |
| 1.09e-49 | FFCP PHASE2:Hg19::chr4:159175135..159175146,+#_f1145dac3b1bc551f23f36960e47dccc | p@chr4:159175135..159175146, + |
| 2.55e-45 | FFCP PHASE1:Hg19::chr7:35756400..35756409,+#_38de04c46e046604c5a538549d0b7519 | p4@ENST00000458087, p4@uc003tew.1 |
| 2.55e-45 | FFCP PHASE2:Hg19::chr7:35756400..35756409,+#_38de04c46e046604c5a538549d0b7519 | p4@ENST00000458087, p4@uc003tew.1 |
| 4.0e-45 | FFCP PHASE1:Hg19::chr3:50306390..50306399,+#_0ac90d7e0dfbc267fd88978d65b247fc | p8@SEMA3B |
| 4.0e-45 | FFCP PHASE2:Hg19::chr3:50306390..50306399,+#_0ac90d7e0dfbc267fd88978d65b247fc | p8@SEMA3B |
| 5.0e-45 | FFCP PHASE2:Hg19::chr3:42687264..42687266,-#_a3d876b60f32a58235b3c957d67280d7 | p@chr3:42687264..42687266, - |
| 5.0e-45 | FFCP PHASE1:Hg19::chr3:42687264..42687266,-#_a3d876b60f32a58235b3c957d67280d7 | p@chr3:42687264..42687266, - |
| 6.26e-45 | FFCP PHASE1:Hg19::chr7:30198187..30198200,+#_a13a8808ce373064cfc47ee0e0032c26 | p@chr7:30198187..30198200, + |
| 6.26e-45 | FFCP PHASE2:Hg19::chr7:30198187..30198200,+#_a13a8808ce373064cfc47ee0e0032c26 | p@chr7:30198187..30198200, + |
| 7.83e-45 | FFCP PHASE2:Hg19::chr2:74667046..74667051,-#_49f6b2081056ddaa4409fe27a618b2e5 | p20@RTKN |
| 7.83e-45 | FFCP PHASE2:Hg19::chr12:26191828..26191840,+#_49f6b2081056ddaa4409fe27a618b2e5 | p@chr12:26191828..26191840, + |
| 7.83e-45 | FFCP PHASE1:Hg19::chr12:26191828..26191840,+#_49f6b2081056ddaa4409fe27a618b2e5 | p@chr12:26191828..26191840, + |
| 7.83e-45 | FFCP PHASE1:Hg19::chr2:74667046..74667051,-#_49f6b2081056ddaa4409fe27a618b2e5 | p20@RTKN |
| 9.79e-45 | FFCP PHASE1:Hg19::chr4:95972775..95972786,+#_c4e1c5627450c699c77227ac43547b9a | p16@BMPR1B |
| 9.79e-45 | FFCP PHASE2:Hg19::chr4:95972775..95972786,+#_c4e1c5627450c699c77227ac43547b9a | p16@BMPR1B |
| 1.22e-44 | FFCP PHASE2:Hg19::chr4:167759804..167759851,-#_d2aa3586bb7e43659d19420addc9d269 | p@chr4:167759804..167759851, - |
| 1.22e-44 | FFCP PHASE1:Hg19::chr4:167759804..167759851,-#_d2aa3586bb7e43659d19420addc9d269 | p@chr4:167759804..167759851, - |
| 1.53e-44 | FFCP PHASE2:Hg19::chr5:148442824..148442835,+#_99e7a6647616cd53446f0f716cd68bef | p4@ENST00000515519 |
| 1.53e-44 | FFCP PHASE2:Hg19::chr4:158493753..158493770,+#_99e7a6647616cd53446f0f716cd68bef | p1@ENST00000455598 |
| 1.53e-44 | FFCP PHASE1:Hg19::chr5:148442824..148442835,+#_99e7a6647616cd53446f0f716cd68bef | p4@ENST00000515519 |
| 1.53e-44 | FFCP PHASE1:Hg19::chr4:158493753..158493770,+#_99e7a6647616cd53446f0f716cd68bef | p1@ENST00000455598 |
| 2.98e-44 | FFCP PHASE2:Hg19::chrX:103046902..103046909,+#_a5ed8540173fb36dea945e40fa89f27d | p@chrX:103046902..103046909, + |
| 2.98e-44 | FFCP PHASE1:Hg19::chrX:103046902..103046909,+#_a5ed8540173fb36dea945e40fa89f27d | p@chrX:103046902..103046909, + |
| 3.99e-41 | FFCP PHASE1:Hg19::chr2:58134822..58134832,+#_960f440b22fd71cb21d9ebe5f1286fb3 | p9@VRK2 |
| 3.99e-41 | FFCP PHASE2:Hg19::chr2:58134822..58134832,+#_960f440b22fd71cb21d9ebe5f1286fb3 | p9@VRK2 |
| 4.89e-41 | FFCP PHASE2:Hg19::chr1:84413166..84413168,-#_fedb8c3224fd8cf9a39aaffa61b4da9f | p4@TTLL7 |
| 4.89e-41 | FFCP PHASE1:Hg19::chr1:84413166..84413168,-#_fedb8c3224fd8cf9a39aaffa61b4da9f | p4@TTLL7 |
| 5.99e-41 | FFCP PHASE1:Hg19::chr10:64133988..64133999,-#_c2bfc114fb230d6dd11e09dd2a069390 | p@chr10:64133988..64133999, - |
| 5.99e-41 | FFCP PHASE2:Hg19::chr10:64133988..64133999,-#_c2bfc114fb230d6dd11e09dd2a069390 | p@chr10:64133988..64133999, - |
| 7.33e-41 | FFCP PHASE2:Hg19::chr16:83741439..83741440,-#_eb02425ba1147eaf4e1a25ff7ab6b97c | p@chr16:83741439..83741440, - |
| 7.33e-41 | FFCP PHASE1:Hg19::chr16:83741439..83741440,-#_eb02425ba1147eaf4e1a25ff7ab6b97c | p@chr16:83741439..83741440, - |
| 1.1e-40 | FFCP PHASE1:Hg19::chr16:19612967..19612983,+#_4096737e177f9fed624660abf783dba6 | p7@C16orf62 |
| 1.1e-40 | FFCP PHASE1:Hg19::chr11:119846813..119846826,+#_4096737e177f9fed624660abf783dba6 | p@chr11:119846813..119846826, + |
| 1.1e-40 | FFCP PHASE2:Hg19::chr11:119846813..119846826,+#_4096737e177f9fed624660abf783dba6 | p@chr11:119846813..119846826, + |
| 1.1e-40 | FFCP PHASE2:Hg19::chr16:19612967..19612983,+#_4096737e177f9fed624660abf783dba6 | p7@C16orf62 |
| 2.01e-40 | FFCP PHASE2:Hg19::chr21:22175450..22175461,-#_6e9898d44aec3ad8f5a4c4780d62f8b1 | p2@LINC00320 |
| 2.01e-40 | FFCP PHASE2:Hg19::chr19:35783038..35783039,+#_6e9898d44aec3ad8f5a4c4780d62f8b1 | p4@MAG |
| 2.01e-40 | FFCP PHASE1:Hg19::chr19:35783038..35783039,+#_6e9898d44aec3ad8f5a4c4780d62f8b1 | p4@MAG |
| 2.01e-40 | FFCP PHASE1:Hg19::chr21:22175450..22175461,-#_6e9898d44aec3ad8f5a4c4780d62f8b1 | p2@LINC00320 |
| 3.01e-40 | FFCP PHASE1:Hg19::chr11:113078055..113078071,+#_305d7de94d22fca2cb56ba3e1707b259 | p@chr11:113078055..113078071, + |
| 3.01e-40 | FFCP PHASE2:Hg19::chr11:113078055..113078071,+#_305d7de94d22fca2cb56ba3e1707b259 | p@chr11:113078055..113078071, + |
| 5.49e-40 | FFCP PHASE1:Hg19::chr11:47616800..47616812,-#_c290521774ba7980a81a8a374a1d3a64 | p@chr11:47616800..47616812, - |
| 5.49e-40 | FFCP PHASE2:Hg19::chr11:47616800..47616812,-#_c290521774ba7980a81a8a374a1d3a64 | p@chr11:47616800..47616812, - |
| 3.28e-37 | FFCP PHASE2:Hg19::chr1:204839880..204839889,+#_c2d105205fa85fec70b58257e4ff2247 | p7@NFASC |
| 3.28e-37 | FFCP PHASE1:Hg19::chr1:204839880..204839889,+#_c2d105205fa85fec70b58257e4ff2247 | p7@NFASC |
| 4.73e-37 | FFCP PHASE2:Hg19::chr21:18885024..18885035,+#_2a434e20aeee63565c401d1139f7b1ac | p4@CXADR |
| 4.73e-37 | FFCP PHASE1:Hg19::chr3:58551936..58551947,+#_2a434e20aeee63565c401d1139f7b1ac | p@chr3:58551936..58551947, + |
Property "Property value" (as page type) with input value "UBPROP:0000001 "Part of the diencephalon consisting of a mass of connecting fibers which relay sensory information to the cerebral cortex.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
