UBERON:0003100: Difference between revisions
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|located_in= | |located_in= | ||
|name=female organism | |name=female organism | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of= | |part_of= | ||
Latest revision as of 17:37, 12 September 2014
| Name: | female organism | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Gonochoristic organism that can produce female gametes." [CARO:0000028] | ||
| Xrefs: |
| ||
| Synonyms: |
"female" RELATED [TAO:0000303] "female human body" NARROW SENSU [FMA:67812] | ||
| Alt_id: | UBERON:XAO_0003005-ZFA_0000303 | ||
| Subset: | vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000468(multi-cellular organism) |
|---|---|
| disjoint_from: | UBERON:0003101(male organism) |
Children
| part of: | UBERON:0000474 (female reproductive system),UBERON:0003134 (female reproductive organ),UBERON:0014404 (female anatomical structure) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10013-101C4 (cervix, adult, pool1)
- 10020-101D2 (ovary, adult, pool1)
- 10021-101D3 (placenta, adult, pool1)
- 10091-102C1
- 10100-102D1 (uterus, adult, pool1)
- 10204-103F6 (vagina, adult)
- 10419-106C5 (breast carcinoma cell line:MDA-MB-453)
- 10426-106D3 (epidermoid carcinoma cell line:A431)
- 10431-106D8 (epidermoid carcinoma cell line:Ca Ski)
- 10448-106F7 (endometrial stromal sarcoma cell line:OMC-9)
... further results Mouse (Mus musculus)
- 10013-101C4 (cervix, adult, pool1)
- 10020-101D2 (ovary, adult, pool1)
- 10021-101D3 (placenta, adult, pool1)
- 10091-102C1
- 10100-102D1 (uterus, adult, pool1)
- 10204-103F6 (vagina, adult)
- 10419-106C5 (breast carcinoma cell line:MDA-MB-453)
- 10426-106D3 (epidermoid carcinoma cell line:A431)
- 10431-106D8 (epidermoid carcinoma cell line:Ca Ski)
- 10448-106F7 (endometrial stromal sarcoma cell line:OMC-9)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003100 (female organism), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 5.05e-58 | FFCP PHASE2:Mm9::chr9:8900409..8900425,+#_4ac010f4303ebeaf7cda8e35369ac992 | p2@Pgr |
| 5.05e-58 | FFCP PHASE1:Mm9::chr9:8900409..8900425,+#_4ac010f4303ebeaf7cda8e35369ac992 | p2@Pgr |
| 2.49e-55 | FFCP PHASE2:Mm9::chr3:79594253..79594277,-#_523307aa97fa4c429a6ad7545d8c42f6 | p@chr3:79594253..79594277, - |
| 2.49e-55 | FFCP PHASE1:Mm9::chr3:79594253..79594277,-#_523307aa97fa4c429a6ad7545d8c42f6 | p@chr3:79594253..79594277, - |
| 7.31e-54 | FFCP PHASE2:Mm9::chr10:5636678..5636725,-#_905457cb4453f31f1d04af23bc6e9a79 | p6@Esr1 |
| 7.31e-54 | FFCP PHASE1:Mm9::chr10:5636678..5636725,-#_905457cb4453f31f1d04af23bc6e9a79 | p6@Esr1 |
| 1.34e-47 | FFCP PHASE2:Mm9::chr7:107154528..107154533,+#_58fc09d46d3bcb93916ce09e0539f8be | p3@Chrdl2 |
| 1.34e-47 | FFCP PHASE1:Mm9::chr7:107154528..107154533,+#_58fc09d46d3bcb93916ce09e0539f8be | p3@Chrdl2 |
| 2.85e-43 | FFCP PHASE2:Mm9::chr9:8900490..8900502,+#_7c9f0ddd576d7af5806b3ec21113bd35 | p4@Pgr |
| 2.85e-43 | FFCP PHASE1:Mm9::chr9:8900490..8900502,+#_7c9f0ddd576d7af5806b3ec21113bd35 | p4@Pgr |
| 8.14e-41 | FFCP PHASE2:Mm9::chr9:8900563..8900574,+#_9367764d5223231dd52e144509b335e9 | p5@Pgr |
| 8.14e-41 | FFCP PHASE1:Mm9::chr9:8900563..8900574,+#_9367764d5223231dd52e144509b335e9 | p5@Pgr |
| 9.54e-41 | FFCP PHASE2:Mm9::chr14:41844272..41844285,-#_d0006f998fcf957d44da2f12cd264821 | p@chr14:41844272..41844285, - |
| 9.54e-41 | FFCP PHASE1:Mm9::chr14:41844272..41844285,-#_d0006f998fcf957d44da2f12cd264821 | p@chr14:41844272..41844285, - |
| 6.64e-40 | FFCP PHASE1:Mm9::chr6:113860479..113860491,-#_3137ad7f1ce8186862c3ead25c91209d | p7@Atp2b2 |
| 6.64e-40 | FFCP PHASE2:Mm9::chr4:88526110..88526132,-#_3137ad7f1ce8186862c3ead25c91209d | p1@Ifne |
| 6.64e-40 | FFCP PHASE2:Mm9::chr9:8752254..8752260,-#_3137ad7f1ce8186862c3ead25c91209d | p@chr9:8752254..8752260, - |
| 6.64e-40 | FFCP PHASE1:Mm9::chr4:88526110..88526132,-#_3137ad7f1ce8186862c3ead25c91209d | p1@Ifne |
| 6.64e-40 | FFCP PHASE2:Mm9::chr6:113860465..113860478,-#_3137ad7f1ce8186862c3ead25c91209d | p4@Atp2b2 |
| 6.64e-40 | FFCP PHASE1:Mm9::chr6:113860465..113860478,-#_3137ad7f1ce8186862c3ead25c91209d | p4@Atp2b2 |
| 6.64e-40 | FFCP PHASE2:Mm9::chr6:113860479..113860491,-#_3137ad7f1ce8186862c3ead25c91209d | p7@Atp2b2 |
| 6.64e-40 | FFCP PHASE1:Mm9::chr9:8752254..8752260,-#_3137ad7f1ce8186862c3ead25c91209d | p@chr9:8752254..8752260, - |
| 5.82e-39 | FFCP PHASE1:Mm9::chr10:5386949..5386954,-#_b3eb7506d07ca7cee5086af0b17833c8 | p@chr10:5386949..5386954, - |
| 5.82e-39 | FFCP PHASE2:Mm9::chr10:5386949..5386954,-#_b3eb7506d07ca7cee5086af0b17833c8 | p@chr10:5386949..5386954, - |
| 1.7e-38 | FFCP PHASE1:Mm9::chr10:5636336..5636347,-#_deac6e816dbf14b599d3bebf7c74730c | p9@Esr1 |
| 1.7e-38 | FFCP PHASE2:Mm9::chr10:5636336..5636347,-#_deac6e816dbf14b599d3bebf7c74730c | p9@Esr1 |
| 2.16e-37 | FFCP PHASE2:Mm9::chr9:8900459..8900489,+#_4063dfd0172c0fee9b0431061edb0d01 | p1@Pgr |
| 2.16e-37 | FFCP PHASE1:Mm9::chr9:8900459..8900489,+#_4063dfd0172c0fee9b0431061edb0d01 | p1@Pgr |
| 5.03e-36 | FFCP PHASE1:Mm9::chr9:98857712..98857715,-#_d7c0b50cd054daf02457bed21c98b0c4 | p@chr9:98857712..98857715, - |
| 5.03e-36 | FFCP PHASE2:Mm9::chr9:98857712..98857715,-#_d7c0b50cd054daf02457bed21c98b0c4 | p@chr9:98857712..98857715, - |
| 6.65e-36 | FFCP PHASE2:Mm9::chr10:5634855..5634866,-#_ac6ea344c14edfdefa55f5b8964e6580 | p@chr10:5634855..5634866, - |
| 6.65e-36 | FFCP PHASE1:Mm9::chr10:5634855..5634866,-#_ac6ea344c14edfdefa55f5b8964e6580 | p@chr10:5634855..5634866, - |
| 8.57e-36 | FFCP PHASE1:Mm9::chr9:8899828..8899855,+#_53881d4301ea5f28694e1afbab250816 | p3@Pgr |
| 8.57e-36 | FFCP PHASE2:Mm9::chr9:8899828..8899855,+#_53881d4301ea5f28694e1afbab250816 | p3@Pgr |
| 1.81e-33 | FFCP PHASE2:Mm9::chr13:37673077..37673087,+#_c272460f881d5c08148a067a691b1b9d | p@chr13:37673077..37673087, + |
| 1.81e-33 | FFCP PHASE1:Mm9::chr13:37673077..37673087,+#_c272460f881d5c08148a067a691b1b9d | p@chr13:37673077..37673087, + |
| 3.34e-33 | FFCP PHASE2:Mm9::chr10:97030695..97030725,+#_d2c53e32199c0d52936d9790d3fee810 | p@chr10:97030695..97030725, + |
| 3.34e-33 | FFCP PHASE1:Mm9::chr10:97030695..97030725,+#_d2c53e32199c0d52936d9790d3fee810 | p@chr10:97030695..97030725, + |
| 3.07e-32 | FFCP PHASE2:Mm9::chr3:103705733..103705744,+#_88472cd4f30e11938f9331dede788f1e | p9@Ptpn22 |
| 3.07e-32 | FFCP PHASE1:Mm9::chr13:19715202..19715209,+#_88472cd4f30e11938f9331dede788f1e | p4@Sfrp4 |
| 3.07e-32 | FFCP PHASE2:Mm9::chr18:78259566..78259574,+#_88472cd4f30e11938f9331dede788f1e | p@chr18:78259566..78259574, + |
| 3.07e-32 | FFCP PHASE1:Mm9::chr18:78259566..78259574,+#_88472cd4f30e11938f9331dede788f1e | p@chr18:78259566..78259574, + |
| 3.07e-32 | FFCP PHASE1:Mm9::chr19:28635465..28635477,-#_88472cd4f30e11938f9331dede788f1e | p@chr19:28635465..28635477, - |
| 3.07e-32 | FFCP PHASE2:Mm9::chr6:113860572..113860579,-#_88472cd4f30e11938f9331dede788f1e | p12@Atp2b2 |
| 3.07e-32 | FFCP PHASE1:Mm9::chr3:103705733..103705744,+#_88472cd4f30e11938f9331dede788f1e | p9@Ptpn22 |
| 3.07e-32 | FFCP PHASE1:Mm9::chr19:28635507..28635515,-#_88472cd4f30e11938f9331dede788f1e | p@chr19:28635507..28635515, - |
| 3.07e-32 | FFCP PHASE1:Mm9::chr6:113860572..113860579,-#_88472cd4f30e11938f9331dede788f1e | p12@Atp2b2 |
| 3.07e-32 | FFCP PHASE1:Mm9::chr10:5484221..5484225,-#_88472cd4f30e11938f9331dede788f1e | p@chr10:5484221..5484225, - |
| 3.07e-32 | FFCP PHASE2:Mm9::chr13:19715202..19715209,+#_88472cd4f30e11938f9331dede788f1e | p4@Sfrp4 |
| 3.07e-32 | FFCP PHASE2:Mm9::chr19:28635465..28635477,-#_88472cd4f30e11938f9331dede788f1e | p@chr19:28635465..28635477, - |
| 3.07e-32 | FFCP PHASE2:Mm9::chr10:5484221..5484225,-#_88472cd4f30e11938f9331dede788f1e | p@chr10:5484221..5484225, - |
| 3.07e-32 | FFCP PHASE2:Mm9::chr19:28635507..28635515,-#_88472cd4f30e11938f9331dede788f1e | p@chr19:28635507..28635515, - |
| 5.01e-32 | FFCP PHASE1:Mm9::chr16:32797458..32797463,-#_6f0318cda57f2d12c0dbd28628350ad7 | p@chr16:32797458..32797463, - |
| 5.01e-32 | FFCP PHASE2:Mm9::chr16:32797458..32797463,-#_6f0318cda57f2d12c0dbd28628350ad7 | p@chr16:32797458..32797463, - |
| 6.41e-32 | FFCP PHASE2:Mm9::chr6:97777273..97777296,+#_353db8343d2946d40f3b5bedc7c26aaf | p@chr6:97777273..97777296, + |
| 6.41e-32 | FFCP PHASE1:Mm9::chr6:97777273..97777296,+#_353db8343d2946d40f3b5bedc7c26aaf | p@chr6:97777273..97777296, + |
| 9.39e-29 | FFCP PHASE2:Mm9::chr6:48857675..48857680,+#_60bb381a837a18ef4c64d41972927c7b | p10@Abp1 |
| 9.39e-29 | FFCP PHASE1:Mm9::chr7:54276659..54276671,+#_60bb381a837a18ef4c64d41972927c7b | p@chr7:54276659..54276671, + |
| 9.39e-29 | FFCP PHASE2:Mm9::chr10:5483083..5483095,-#_60bb381a837a18ef4c64d41972927c7b | p@chr10:5483083..5483095, - |
| 9.39e-29 | FFCP PHASE1:Mm9::chr10:5483083..5483095,-#_60bb381a837a18ef4c64d41972927c7b | p@chr10:5483083..5483095, - |
| 9.39e-29 | FFCP PHASE1:Mm9::chr6:48857675..48857680,+#_60bb381a837a18ef4c64d41972927c7b | p10@Abp1 |
| 9.39e-29 | FFCP PHASE2:Mm9::chr7:54276659..54276671,+#_60bb381a837a18ef4c64d41972927c7b | p@chr7:54276659..54276671, + |
| 1.59e-28 | FFCP PHASE1:Mm9::chr7:96675672..96675683,-#_c74e0cf4ad9cd0027ac4dcdaf99cecf2 | p6@Prss23 |
| 1.59e-28 | FFCP PHASE2:Mm9::chr7:96675672..96675683,-#_c74e0cf4ad9cd0027ac4dcdaf99cecf2 | p6@Prss23 |
| 3.19e-27 | FFCP PHASE1:Mm9::chr5:36006234..36006252,-#_2267a8828ebf91b8561e59e2dda61df1 | p@chr5:36006234..36006252, - |
| 3.19e-27 | FFCP PHASE2:Mm9::chr5:36006234..36006252,-#_2267a8828ebf91b8561e59e2dda61df1 | p@chr5:36006234..36006252, - |
| 3.36e-26 | FFCP PHASE1:Mm9::chr3:108692785..108692812,-#_c487624252481e82f5c8b208cf04ef2b | p1@Fndc7 |
| 3.36e-26 | FFCP PHASE2:Mm9::chr3:108692785..108692812,-#_c487624252481e82f5c8b208cf04ef2b | p1@Fndc7 |
| 3.88e-26 | FFCP PHASE1:Mm9::chr9:50307249..50307269,+#_1eec64b730e09475beca20b7e4d1bc79 | p@chr9:50307249..50307269, + |
| 3.88e-26 | FFCP PHASE2:Mm9::chr9:50307249..50307269,+#_1eec64b730e09475beca20b7e4d1bc79 | p@chr9:50307249..50307269, + |
| 5.07e-26 | FFCP PHASE1:Mm9::chr6:65094976..65094993,-#_8e905ca1f35dd80ecc6cd7b6cbaa1edd | p4@Hpgds |
| 5.07e-26 | FFCP PHASE1:Mm9::chr5:87212132..87212143,-#_8e905ca1f35dd80ecc6cd7b6cbaa1edd | p@chr5:87212132..87212143, - |
| 5.07e-26 | FFCP PHASE2:Mm9::chr19:24200299..24200336,-#_8e905ca1f35dd80ecc6cd7b6cbaa1edd | p@chr19:24200299..24200336, - |
| 5.07e-26 | FFCP PHASE2:Mm9::chr6:65094976..65094993,-#_8e905ca1f35dd80ecc6cd7b6cbaa1edd | p4@Hpgds |
| 5.07e-26 | FFCP PHASE1:Mm9::chr2:49577301..49577323,+#_8e905ca1f35dd80ecc6cd7b6cbaa1edd | p@chr2:49577301..49577323, + |
| 5.07e-26 | FFCP PHASE1:Mm9::chr19:24200299..24200336,-#_8e905ca1f35dd80ecc6cd7b6cbaa1edd | p@chr19:24200299..24200336, - |
| 5.07e-26 | FFCP PHASE2:Mm9::chr5:87212132..87212143,-#_8e905ca1f35dd80ecc6cd7b6cbaa1edd | p@chr5:87212132..87212143, - |
| 5.07e-26 | FFCP PHASE2:Mm9::chr2:49577301..49577323,+#_8e905ca1f35dd80ecc6cd7b6cbaa1edd | p@chr2:49577301..49577323, + |
| 5.88e-26 | FFCP PHASE1:Mm9::chr7:127288800..127288806,-#_5c53c20805d8337ede33fb2f6de16cf3 | p1@Zp2 |
| 5.88e-26 | FFCP PHASE1:Mm9::chr2:34922534..34922550,-#_5c53c20805d8337ede33fb2f6de16cf3 | p@chr2:34922534..34922550, - |
| 5.88e-26 | FFCP PHASE2:Mm9::chr2:34922534..34922550,-#_5c53c20805d8337ede33fb2f6de16cf3 | p@chr2:34922534..34922550, - |
| 5.88e-26 | FFCP PHASE2:Mm9::chr7:127288800..127288806,-#_5c53c20805d8337ede33fb2f6de16cf3 | p1@Zp2 |
| 9.98e-26 | FFCP PHASE2:Mm9::chr9:50314500..50314503,+#_655931297e50e7d2ed5f81662d618e58 | p@chr9:50314500..50314503, + |
| 9.98e-26 | FFCP PHASE1:Mm9::chr9:50314500..50314503,+#_655931297e50e7d2ed5f81662d618e58 | p@chr9:50314500..50314503, + |
| 2.06e-25 | FFCP PHASE1:Mm9::chr7:96676045..96676058,-#_465d5f0158382a10fc8c601a56219f4b | p5@Prss23 |
| 2.06e-25 | FFCP PHASE2:Mm9::chr7:96676045..96676058,-#_465d5f0158382a10fc8c601a56219f4b | p5@Prss23 |
| 2.31e-25 | FFCP PHASE2:Mm9::chr10:5527049..5527053,-#_3afb443c62933b04172a0d511b336767 | p@chr10:5527049..5527053, - |
| 2.31e-25 | FFCP PHASE1:Mm9::chr10:5527049..5527053,-#_3afb443c62933b04172a0d511b336767 | p@chr10:5527049..5527053, - |
| 2.91e-25 | FFCP PHASE2:Mm9::chr10:116587456..116587469,-#_1e0c21594c1982223b8ff05aa57dbbe7 | p@chr10:116587456..116587469, - |
| 2.91e-25 | FFCP PHASE1:Mm9::chr10:116587456..116587469,-#_1e0c21594c1982223b8ff05aa57dbbe7 | p@chr10:116587456..116587469, - |
| 3.66e-25 | FFCP PHASE2:Mm9::chr4:35105498..35105509,-#_22ef69934c548464b8524bfadee92409 | p@chr4:35105498..35105509, - |
| 3.66e-25 | FFCP PHASE1:Mm9::chr4:35105498..35105509,-#_22ef69934c548464b8524bfadee92409 | p@chr4:35105498..35105509, - |
| 1.04e-24 | FFCP PHASE1:Mm9::chr6:52190656..52190667,-#_d9fcfd33d01d1e6d9375b489f72f7676 | p7@Hoxa10 |
| 1.04e-24 | FFCP PHASE2:Mm9::chr6:52190656..52190667,-#_d9fcfd33d01d1e6d9375b489f72f7676 | p7@Hoxa10 |
| 1.15e-24 | FFCP PHASE2:Mm9::chr11:98561479..98561520,+#_60fdbf5005a12d0f78e9a5f72d1a4e42 | p@chr11:98561479..98561520, + |
| 1.15e-24 | FFCP PHASE1:Mm9::chr11:98561479..98561520,+#_60fdbf5005a12d0f78e9a5f72d1a4e42 | p@chr11:98561479..98561520, + |
| 1.34e-24 | FFCP PHASE2:Mm9::chr13:27437553..27437554,+#_68df6a80c1f25c94573a966bf2a9ac27 | p3@Prl8a2 |
| 1.34e-24 | FFCP PHASE1:Mm9::chr2:169512387..169512392,-#_68df6a80c1f25c94573a966bf2a9ac27 | p@chr2:169512387..169512392, - |
| 1.34e-24 | FFCP PHASE1:Mm9::chr12:8339024..8339034,+#_68df6a80c1f25c94573a966bf2a9ac27 | p@chr12:8339024..8339034, + |
| 1.34e-24 | FFCP PHASE2:Mm9::chr6:113860537..113860546,-#_68df6a80c1f25c94573a966bf2a9ac27 | p13@Atp2b2 |
