UBERON:0003277: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 13: | Line 13: | ||
|located_in= | |located_in= | ||
|name=skeleton of upper jaw | |name=skeleton of upper jaw | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0001708;;UBERON:0001709 | |part_of=UBERON:0001708;;UBERON:0001709 | ||
Latest revision as of 17:39, 12 September 2014
| Name: | skeleton of upper jaw | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "A subdivision of skeleton that is part of a upper jaw [Obol]." [OBOL:automatic] | ||
| Xrefs: |
| ||
| Synonyms: |
"palatoquadrate arch subdivision of skeleton" EXACT [OBOL:automatic] "subdivision of skeleton of palatoquadrate arch" EXACT [OBOL:automatic] "subdivision of skeleton of upper jaw" EXACT [OBOL:automatic] "upper jaw skeleton" EXACT [] "upper jaw subdivision of skeleton" EXACT [OBOL:automatic] |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0004121(ectoderm-derived structure),UBERON:0010912(subdivision of skeleton) |
|---|---|
| part_of: | UBERON:0001708(jaw skeleton),UBERON:0001709(upper jaw region) |
Children
| part of: | UBERON:0002244 (premaxilla),UBERON:0002397 (maxilla),UBERON:0011597 (bone of upper jaw),UBERON:0011628 (early premaxilla) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10813-111B3 (normal embryonic palatal mesenchymal cell line:HEPM)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003277 (skeleton of upper jaw), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 5.42e-195 | FFCP PHASE2:Hg19::chr17:54893192..54893195,-#_cbaa1d13eafa29667da1c6e3cd154e5b | p14@C17orf67 |
| 5.42e-195 | FFCP PHASE1:Hg19::chr17:54893192..54893195,-#_cbaa1d13eafa29667da1c6e3cd154e5b | p14@C17orf67 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr17:54893292..54893300,-#_a146be49c311215fa9c4dc6b81299cf4 | p13@C17orf67 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr8:57353655..57353662,-#_a146be49c311215fa9c4dc6b81299cf4 | p@chr8:57353655..57353662, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr17:54893213..54893220,-#_a146be49c311215fa9c4dc6b81299cf4 | p12@C17orf67 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr17:54893269..54893278,-#_a146be49c311215fa9c4dc6b81299cf4 | p11@C17orf67 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr17:54893213..54893220,-#_a146be49c311215fa9c4dc6b81299cf4 | p12@C17orf67 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr8:57353655..57353662,-#_a146be49c311215fa9c4dc6b81299cf4 | p@chr8:57353655..57353662, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr17:54893292..54893300,-#_a146be49c311215fa9c4dc6b81299cf4 | p13@C17orf67 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr17:54893269..54893278,-#_a146be49c311215fa9c4dc6b81299cf4 | p11@C17orf67 |
| 2.39e-66 | FFCP PHASE2:Hg19::chr4:151503647..151503656,+#_fad06b614fd661003bb5f48e70cfcf19 | p14@MAB21L2 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr5:75912402..75912418,-#_fad06b614fd661003bb5f48e70cfcf19 | p@chr5:75912402..75912418, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr5:75912402..75912418,-#_fad06b614fd661003bb5f48e70cfcf19 | p@chr5:75912402..75912418, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr4:151503647..151503656,+#_fad06b614fd661003bb5f48e70cfcf19 | p14@MAB21L2 |
| 4.66e-66 | FFCP PHASE2:Hg19::chr4:151505582..151505614,+#_816518ab369e8f0c82e73d4e13e69900 | p@chr4:151505582..151505614, + |
| 4.66e-66 | FFCP PHASE1:Hg19::chr4:151505582..151505614,+#_816518ab369e8f0c82e73d4e13e69900 | p@chr4:151505582..151505614, + |
| 1.46e-50 | FFCP PHASE1:Hg19::chr8:57354278..57354286,+#_e1634a8e9f56bca52e9a6a67a8d943a9 | p@chr8:57354278..57354286, + |
| 1.46e-50 | FFCP PHASE1:Hg19::chr17:54893196..54893207,-#_e1634a8e9f56bca52e9a6a67a8d943a9 | p9@C17orf67 |
| 1.46e-50 | FFCP PHASE2:Hg19::chr8:57354278..57354286,+#_e1634a8e9f56bca52e9a6a67a8d943a9 | p@chr8:57354278..57354286, + |
| 1.46e-50 | FFCP PHASE2:Hg19::chr17:54893196..54893207,-#_e1634a8e9f56bca52e9a6a67a8d943a9 | p9@C17orf67 |
| 1.46e-50 | FFCP PHASE2:Hg19::chr3:157823323..157823328,+#_e1634a8e9f56bca52e9a6a67a8d943a9 | p17@RSRC1 |
| 1.46e-50 | FFCP PHASE1:Hg19::chr3:157823323..157823328,+#_e1634a8e9f56bca52e9a6a67a8d943a9 | p17@RSRC1 |
| 2.42e-50 | FFCP PHASE1:Hg19::chr8:57802672..57802682,-#_115d6cd611275bc7697821905087d99d | p@chr8:57802672..57802682, - |
| 2.42e-50 | FFCP PHASE2:Hg19::chr8:57802672..57802682,-#_115d6cd611275bc7697821905087d99d | p@chr8:57802672..57802682, - |
| 3.99e-50 | FFCP PHASE1:Hg19::chr5:75913767..75913778,-#_6feac340b3bada795a202f5ae5b27233 | p@chr5:75913767..75913778, - |
| 3.99e-50 | FFCP PHASE1:Hg19::chr17:76930661..76930674,+#_6feac340b3bada795a202f5ae5b27233 | p1@AK123925 |
| 3.99e-50 | FFCP PHASE2:Hg19::chr5:75913767..75913778,-#_6feac340b3bada795a202f5ae5b27233 | p@chr5:75913767..75913778, - |
| 3.99e-50 | FFCP PHASE2:Hg19::chr17:76930661..76930674,+#_6feac340b3bada795a202f5ae5b27233 | p1@AK123925 |
| 3.99e-50 | FFCP PHASE1:Hg19::chr12:85673913..85673919,+#_6feac340b3bada795a202f5ae5b27233 | p7@ALX1 |
| 3.99e-50 | FFCP PHASE2:Hg19::chr12:85673913..85673919,+#_6feac340b3bada795a202f5ae5b27233 | p7@ALX1 |
| 6.58e-50 | FFCP PHASE2:Hg19::chr2:33519090..33519092,+#_753bb7e85422957fedc64f6d7779ee85 | p@chr2:33519090..33519092, + |
| 6.58e-50 | FFCP PHASE1:Hg19::chr13:28961248..28961262,-#_753bb7e85422957fedc64f6d7779ee85 | p23@FLT1 |
| 6.58e-50 | FFCP PHASE1:Hg19::chr2:33519090..33519092,+#_753bb7e85422957fedc64f6d7779ee85 | p@chr2:33519090..33519092, + |
| 6.58e-50 | FFCP PHASE2:Hg19::chr13:28961248..28961262,-#_753bb7e85422957fedc64f6d7779ee85 | p23@FLT1 |
| 6.62e-41 | FFCP PHASE1:Hg19::chr8:57353779..57353790,-#_92af1e3e53a4035cf3a869e1ab1907ca | p@chr8:57353779..57353790, - |
| 6.62e-41 | FFCP PHASE1:Hg19::chr8:57354143..57354152,+#_92af1e3e53a4035cf3a869e1ab1907ca | p@chr8:57354143..57354152, + |
| 6.62e-41 | FFCP PHASE1:Hg19::chr8:57353666..57353675,-#_92af1e3e53a4035cf3a869e1ab1907ca | p@chr8:57353666..57353675, - |
| 6.62e-41 | FFCP PHASE2:Hg19::chr8:57354143..57354152,+#_92af1e3e53a4035cf3a869e1ab1907ca | p@chr8:57354143..57354152, + |
| 6.62e-41 | FFCP PHASE2:Hg19::chr8:57353779..57353790,-#_92af1e3e53a4035cf3a869e1ab1907ca | p@chr8:57353779..57353790, - |
| 6.62e-41 | FFCP PHASE2:Hg19::chr8:57353666..57353675,-#_92af1e3e53a4035cf3a869e1ab1907ca | p@chr8:57353666..57353675, - |
| 1.48e-40 | FFCP PHASE2:Hg19::chr1:75600308..75600316,+#_bb3690e04f243e177559cc00b3c0a81f | p8@LHX8 |
| 1.48e-40 | FFCP PHASE1:Hg19::chr20:49253452..49253461,-#_bb3690e04f243e177559cc00b3c0a81f | p12@FAM65C |
| 1.48e-40 | FFCP PHASE1:Hg19::chr1:6615391..6615401,+#_bb3690e04f243e177559cc00b3c0a81f | p2@TAS1R1 |
| 1.48e-40 | FFCP PHASE2:Hg19::chr20:49253452..49253461,-#_bb3690e04f243e177559cc00b3c0a81f | p12@FAM65C |
| 1.48e-40 | FFCP PHASE1:Hg19::chr1:75600308..75600316,+#_bb3690e04f243e177559cc00b3c0a81f | p8@LHX8 |
| 1.48e-40 | FFCP PHASE2:Hg19::chr1:6615391..6615401,+#_bb3690e04f243e177559cc00b3c0a81f | p2@TAS1R1 |
| 2.21e-40 | FFCP PHASE2:Hg19::chr16:67687543..67687559,-#_372fea338743fca0b36b118d42f11f9e | p@chr16:67687543..67687559, - |
| 2.21e-40 | FFCP PHASE1:Hg19::chr5:75912831..75912842,-#_372fea338743fca0b36b118d42f11f9e | p@chr5:75912831..75912842, - |
| 2.21e-40 | FFCP PHASE1:Hg19::chr16:67687543..67687559,-#_372fea338743fca0b36b118d42f11f9e | p@chr16:67687543..67687559, - |
| 2.21e-40 | FFCP PHASE2:Hg19::chr5:75912831..75912842,-#_372fea338743fca0b36b118d42f11f9e | p@chr5:75912831..75912842, - |
| 3.3e-40 | FFCP PHASE2:Hg19::chr6:46190219..46190230,-#_9c609b69eb63f27d0d64bc35ff023c5a | p@chr6:46190219..46190230, - |
| 3.3e-40 | FFCP PHASE1:Hg19::chr9:125165007..125165016,+#_9c609b69eb63f27d0d64bc35ff023c5a | p@chr9:125165007..125165016, + |
| 3.3e-40 | FFCP PHASE1:Hg19::chr6:46190219..46190230,-#_9c609b69eb63f27d0d64bc35ff023c5a | p@chr6:46190219..46190230, - |
| 3.3e-40 | FFCP PHASE2:Hg19::chr9:125165007..125165016,+#_9c609b69eb63f27d0d64bc35ff023c5a | p@chr9:125165007..125165016, + |
| 1.84e-34 | FFCP PHASE2:Hg19::chr10:15760985..15760992,-#_6f096a2cd15b6d3e0e853b5874bee526 | p@chr10:15760985..15760992, - |
| 1.84e-34 | FFCP PHASE2:Hg19::chr8:57359557..57359570,-#_6f096a2cd15b6d3e0e853b5874bee526 | p5@PENK |
| 1.84e-34 | FFCP PHASE1:Hg19::chr4:8594472..8594473,+#_6f096a2cd15b6d3e0e853b5874bee526 | p4@CPZ |
| 1.84e-34 | FFCP PHASE2:Hg19::chr4:8594472..8594473,+#_6f096a2cd15b6d3e0e853b5874bee526 | p4@CPZ |
| 1.84e-34 | FFCP PHASE1:Hg19::chr10:15760985..15760992,-#_6f096a2cd15b6d3e0e853b5874bee526 | p@chr10:15760985..15760992, - |
| 1.84e-34 | FFCP PHASE1:Hg19::chr8:57359557..57359570,-#_6f096a2cd15b6d3e0e853b5874bee526 | p5@PENK |
| 2.58e-34 | FFCP PHASE1:Hg19::chr14:61125018..61125037,-#_f7a4ed61d5105750030a9031b4a96570 | p9@SIX1 |
| 2.58e-34 | FFCP PHASE2:Hg19::chr14:61125018..61125037,-#_f7a4ed61d5105750030a9031b4a96570 | p9@SIX1 |
| 5.05e-34 | FFCP PHASE1:Hg19::chr6:134327986..134327991,-#_3e243cd6acd85a53e6cfa7ef37e2ac8c | p@chr6:134327986..134327991, - |
| 5.05e-34 | FFCP PHASE2:Hg19::chr6:134327986..134327991,-#_3e243cd6acd85a53e6cfa7ef37e2ac8c | p@chr6:134327986..134327991, - |
| 7.06e-34 | FFCP PHASE2:Hg19::chr8:57353676..57353688,-#_0cb8ee18c512da9cd8f6ce8d11c6cb8b | p@chr8:57353676..57353688, - |
| 7.06e-34 | FFCP PHASE1:Hg19::chr8:57353676..57353688,-#_0cb8ee18c512da9cd8f6ce8d11c6cb8b | p@chr8:57353676..57353688, - |
| 7.06e-34 | FFCP PHASE1:Hg19::chr13:58291223..58291226,+#_0cb8ee18c512da9cd8f6ce8d11c6cb8b | p@chr13:58291223..58291226, + |
| 7.06e-34 | FFCP PHASE2:Hg19::chr13:58291223..58291226,+#_0cb8ee18c512da9cd8f6ce8d11c6cb8b | p@chr13:58291223..58291226, + |
| 9.85e-34 | FFCP PHASE2:Hg19::chrX:133792540..133792551,-#_a2fc91546f2f5f4b707db49fe969b38e | p4@PLAC1 |
| 9.85e-34 | FFCP PHASE1:Hg19::chr5:127873659..127873667,-#_a2fc91546f2f5f4b707db49fe969b38e | p12@FBN2 |
| 9.85e-34 | FFCP PHASE1:Hg19::chr5:19721484..19721507,-#_a2fc91546f2f5f4b707db49fe969b38e | p@chr5:19721484..19721507, - |
| 9.85e-34 | FFCP PHASE1:Hg19::chrX:133792540..133792551,-#_a2fc91546f2f5f4b707db49fe969b38e | p4@PLAC1 |
| 9.85e-34 | FFCP PHASE2:Hg19::chr5:127873659..127873667,-#_a2fc91546f2f5f4b707db49fe969b38e | p12@FBN2 |
| 9.85e-34 | FFCP PHASE2:Hg19::chr5:19721484..19721507,-#_a2fc91546f2f5f4b707db49fe969b38e | p@chr5:19721484..19721507, - |
| 7.48e-30 | FFCP PHASE2:Hg19::chr8:57353982..57353991,-#_f52b53bb05588d3391c7536156be6819 | p@chr8:57353982..57353991, - |
| 7.48e-30 | FFCP PHASE1:Hg19::chr8:57353804..57353821,-#_f52b53bb05588d3391c7536156be6819 | p@chr8:57353804..57353821, - |
| 7.48e-30 | FFCP PHASE1:Hg19::chr8:57354360..57354367,+#_f52b53bb05588d3391c7536156be6819 | p@chr8:57354360..57354367, + |
| 7.48e-30 | FFCP PHASE2:Hg19::chr8:57353804..57353821,-#_f52b53bb05588d3391c7536156be6819 | p@chr8:57353804..57353821, - |
| 7.48e-30 | FFCP PHASE1:Hg19::chr8:57353982..57353991,-#_f52b53bb05588d3391c7536156be6819 | p@chr8:57353982..57353991, - |
| 7.48e-30 | FFCP PHASE2:Hg19::chr8:57354360..57354367,+#_f52b53bb05588d3391c7536156be6819 | p@chr8:57354360..57354367, + |
| 9.99e-30 | FFCP PHASE2:Hg19::chr3:157824322..157824334,-#_1274431db3a485f4d6cfc0958f2dd382 | p7@SHOX2 |
| 9.99e-30 | FFCP PHASE1:Hg19::chr10:15762107..15762114,-#_1274431db3a485f4d6cfc0958f2dd382 | p10@ITGA8 |
| 9.99e-30 | FFCP PHASE2:Hg19::chr10:15762107..15762114,-#_1274431db3a485f4d6cfc0958f2dd382 | p10@ITGA8 |
| 9.99e-30 | FFCP PHASE1:Hg19::chr3:157824322..157824334,-#_1274431db3a485f4d6cfc0958f2dd382 | p7@SHOX2 |
| 1.33e-29 | FFCP PHASE1:Hg19::chr22:28193943..28193956,-#_804d0ef9b943d45108ee34b71ae56b4a | p@chr22:28193943..28193956, - |
| 1.33e-29 | FFCP PHASE2:Hg19::chrX:132670143..132670152,-#_804d0ef9b943d45108ee34b71ae56b4a | p@chrX:132670143..132670152, - |
| 1.33e-29 | FFCP PHASE2:Hg19::chr17:79071218..79071221,-#_804d0ef9b943d45108ee34b71ae56b4a | p@chr17:79071218..79071221, - |
| 1.33e-29 | FFCP PHASE2:Hg19::chr22:28193943..28193956,-#_804d0ef9b943d45108ee34b71ae56b4a | p@chr22:28193943..28193956, - |
| 1.33e-29 | FFCP PHASE1:Hg19::chrX:132670143..132670152,-#_804d0ef9b943d45108ee34b71ae56b4a | p@chrX:132670143..132670152, - |
| 1.33e-29 | FFCP PHASE1:Hg19::chr17:79071218..79071221,-#_804d0ef9b943d45108ee34b71ae56b4a | p@chr17:79071218..79071221, - |
| 1.78e-29 | FFCP PHASE2:Hg19::chr1:21904551..21904569,-#_cdade3261ccba8cdb0eb73ca59ec21c6 | p@chr1:21904551..21904569, - |
| 1.78e-29 | FFCP PHASE1:Hg19::chr1:21904551..21904569,-#_cdade3261ccba8cdb0eb73ca59ec21c6 | p@chr1:21904551..21904569, - |
| 3.16e-29 | FFCP PHASE1:Hg19::chr8:57359975..57359992,-#_8bddcb17192a487eac36b57a185d7755 | p@chr8:57359975..57359992, - |
| 3.16e-29 | FFCP PHASE2:Hg19::chr1:156470861..156470868,-#_8bddcb17192a487eac36b57a185d7755 | p18@MEF2D |
| 3.16e-29 | FFCP PHASE1:Hg19::chr14:89044406..89044416,+#_8bddcb17192a487eac36b57a185d7755 | p@chr14:89044406..89044416, + |
| 3.16e-29 | FFCP PHASE2:Hg19::chr14:89044406..89044416,+#_8bddcb17192a487eac36b57a185d7755 | p@chr14:89044406..89044416, + |
| 3.16e-29 | FFCP PHASE2:Hg19::chr8:57359975..57359992,-#_8bddcb17192a487eac36b57a185d7755 | p@chr8:57359975..57359992, - |
| 3.16e-29 | FFCP PHASE1:Hg19::chr1:156470861..156470868,-#_8bddcb17192a487eac36b57a185d7755 | p18@MEF2D |
| 4.2e-29 | FFCP PHASE2:Hg19::chr1:6615468..6615485,+#_f140f42ae873d139639852eb5c0ec3b3 | p1@TAS1R1 |
| 4.2e-29 | FFCP PHASE1:Hg19::chr13:36046127..36046134,+#_f140f42ae873d139639852eb5c0ec3b3 | p@chr13:36046127..36046134, + |
