UBERON:0004357: Difference between revisions
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|is_obsolete= | |is_obsolete= | ||
|located_in= | |located_in= | ||
|name=limb/fin bud | |name=paired limb/fin bud | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0000922 | |part_of=UBERON:0000922 | ||
Latest revision as of 17:45, 12 September 2014
| Name: | paired limb/fin bud | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Xrefs: |
| ||
| Synonyms: | "paired appendage bud" EXACT [] | ||
| Comments: | Genes: In limb buds of chick and mouse, Shh expression is activated as soon as there is a morphological bud, whereas in S. canicula fin buds, consistent with reported data in other cartilaginous fishes, Shh is transcribed late in fin development[PMID:17187056] |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0002050(embryonic structure),UBERON:0003102(surface structure) |
|---|---|
| develops_from: | UBERON:0005732(limb/fin field) |
| part_of: | UBERON:0000922(embryo) |
Children
| is a: | UBERON:0004347 (limb bud),UBERON:0005419 (pectoral appendage bud),UBERON:0005420 (pelvic appendage bud) |
|---|---|
| develops from: | UBERON:0004708 (paired limb/fin) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004357 (paired limb/fin bud), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 5.42e-195 | FFCP PHASE2:Hg19::chr7:128483294..128483304,+#_e0f7000c39621f7dc80a4678a30855d9 | p@chr7:128483294..128483304, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr10:79759687..79759690,+#_e0f7000c39621f7dc80a4678a30855d9 | p@chr10:79759687..79759690, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr10:97176812..97176813,+#_e0f7000c39621f7dc80a4678a30855d9 | p@chr10:97176812..97176813, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr2:76859417..76859418,+#_e0f7000c39621f7dc80a4678a30855d9 | p@chr2:76859417..76859418, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr11:3691037..3691040,+#_e0f7000c39621f7dc80a4678a30855d9 | p@chr11:3691037..3691040, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr4:186423235..186423240,-#_e0f7000c39621f7dc80a4678a30855d9 | p@chr4:186423235..186423240, - |
| 5.42e-195 | FFCP PHASE1:Hg19::chr22:25535147..25535150,+#_e0f7000c39621f7dc80a4678a30855d9 | p@chr22:25535147..25535150, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr4:186423235..186423240,-#_e0f7000c39621f7dc80a4678a30855d9 | p@chr4:186423235..186423240, - |
| 5.42e-195 | FFCP PHASE2:Hg19::chr2:76859417..76859418,+#_e0f7000c39621f7dc80a4678a30855d9 | p@chr2:76859417..76859418, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr10:79759687..79759690,+#_e0f7000c39621f7dc80a4678a30855d9 | p@chr10:79759687..79759690, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr22:25535147..25535150,+#_e0f7000c39621f7dc80a4678a30855d9 | p@chr22:25535147..25535150, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr2:179396370..179396375,-#_e0f7000c39621f7dc80a4678a30855d9 | p@chr2:179396370..179396375, - |
| 5.42e-195 | FFCP PHASE2:Hg19::chr10:97176812..97176813,+#_e0f7000c39621f7dc80a4678a30855d9 | p@chr10:97176812..97176813, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr2:179396370..179396375,-#_e0f7000c39621f7dc80a4678a30855d9 | p@chr2:179396370..179396375, - |
| 5.42e-195 | FFCP PHASE1:Hg19::chr4:85166508..85166512,+#_e0f7000c39621f7dc80a4678a30855d9 | p@chr4:85166508..85166512, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr7:128483294..128483304,+#_e0f7000c39621f7dc80a4678a30855d9 | p@chr7:128483294..128483304, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr4:85166508..85166512,+#_e0f7000c39621f7dc80a4678a30855d9 | p@chr4:85166508..85166512, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr11:3691037..3691040,+#_e0f7000c39621f7dc80a4678a30855d9 | p@chr11:3691037..3691040, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:152499727..152499734,-#_c5c5eaaf41c2fb67f9a674ed2d7264f5 | p@chr2:152499727..152499734, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:152525581..152525588,-#_c5c5eaaf41c2fb67f9a674ed2d7264f5 | p@chr2:152525581..152525588, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:64069328..64069334,-#_c5c5eaaf41c2fb67f9a674ed2d7264f5 | p7@FLJ36848 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:168104676..168104679,+#_c5c5eaaf41c2fb67f9a674ed2d7264f5 | p104@XIRP2 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr6:33716557..33716600,-#_c5c5eaaf41c2fb67f9a674ed2d7264f5 | p@chr6:33716557..33716600, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:152553958..152553964,-#_c5c5eaaf41c2fb67f9a674ed2d7264f5 | p@chr2:152553958..152553964, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr7:66800928..66800936,+#_c5c5eaaf41c2fb67f9a674ed2d7264f5 | p1@ENST00000430244, p1@uc003tvu.2 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:168104926..168104927,+#_c5c5eaaf41c2fb67f9a674ed2d7264f5 | p108@XIRP2 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:152520248..152520253,-#_c5c5eaaf41c2fb67f9a674ed2d7264f5 | p@chr2:152520248..152520253, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:64069328..64069334,-#_c5c5eaaf41c2fb67f9a674ed2d7264f5 | p7@FLJ36848 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr6:33716557..33716600,-#_c5c5eaaf41c2fb67f9a674ed2d7264f5 | p@chr6:33716557..33716600, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:168105987..168105994,+#_c5c5eaaf41c2fb67f9a674ed2d7264f5 | p54@XIRP2 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:168104926..168104927,+#_c5c5eaaf41c2fb67f9a674ed2d7264f5 | p108@XIRP2 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:179514306..179514308,-#_c5c5eaaf41c2fb67f9a674ed2d7264f5 | p@chr2:179514306..179514308, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr13:114067922..114067931,-#_c5c5eaaf41c2fb67f9a674ed2d7264f5 | p@chr13:114067922..114067931, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:152553958..152553964,-#_c5c5eaaf41c2fb67f9a674ed2d7264f5 | p@chr2:152553958..152553964, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:152499727..152499734,-#_c5c5eaaf41c2fb67f9a674ed2d7264f5 | p@chr2:152499727..152499734, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr7:66800928..66800936,+#_c5c5eaaf41c2fb67f9a674ed2d7264f5 | p1@ENST00000430244, p1@uc003tvu.2 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr5:137206180..137206187,+#_c5c5eaaf41c2fb67f9a674ed2d7264f5 | p@chr5:137206180..137206187, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:152520248..152520253,-#_c5c5eaaf41c2fb67f9a674ed2d7264f5 | p@chr2:152520248..152520253, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:152534468..152534476,-#_c5c5eaaf41c2fb67f9a674ed2d7264f5 | p@chr2:152534468..152534476, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr5:137206180..137206187,+#_c5c5eaaf41c2fb67f9a674ed2d7264f5 | p@chr5:137206180..137206187, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr13:114067922..114067931,-#_c5c5eaaf41c2fb67f9a674ed2d7264f5 | p@chr13:114067922..114067931, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr3:188070178..188070183,+#_c5c5eaaf41c2fb67f9a674ed2d7264f5 | p@chr3:188070178..188070183, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr1:119487319..119487331,-#_c5c5eaaf41c2fb67f9a674ed2d7264f5 | p@chr1:119487319..119487331, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr3:188070178..188070183,+#_c5c5eaaf41c2fb67f9a674ed2d7264f5 | p@chr3:188070178..188070183, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:152534468..152534476,-#_c5c5eaaf41c2fb67f9a674ed2d7264f5 | p@chr2:152534468..152534476, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr5:117747577..117747580,+#_c5c5eaaf41c2fb67f9a674ed2d7264f5 | p@chr5:117747577..117747580, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:168106638..168106641,+#_c5c5eaaf41c2fb67f9a674ed2d7264f5 | p93@XIRP2 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr1:119487319..119487331,-#_c5c5eaaf41c2fb67f9a674ed2d7264f5 | p@chr1:119487319..119487331, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr22:36000901..36000903,-#_c5c5eaaf41c2fb67f9a674ed2d7264f5 | p@chr22:36000901..36000903, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr5:175125123..175125125,+#_c5c5eaaf41c2fb67f9a674ed2d7264f5 | p@chr5:175125123..175125125, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:168102721..168102729,+#_c5c5eaaf41c2fb67f9a674ed2d7264f5 | p77@XIRP2 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr8:144542829..144542857,-#_c5c5eaaf41c2fb67f9a674ed2d7264f5 | p@chr8:144542829..144542857, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr15:51060095..51060101,+#_c5c5eaaf41c2fb67f9a674ed2d7264f5 | p@chr15:51060095..51060101, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:168102721..168102729,+#_c5c5eaaf41c2fb67f9a674ed2d7264f5 | p77@XIRP2 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:168105362..168105368,+#_c5c5eaaf41c2fb67f9a674ed2d7264f5 | p46@XIRP2 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:179399371..179399376,-#_c5c5eaaf41c2fb67f9a674ed2d7264f5 | p@chr2:179399371..179399376, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr8:144542829..144542857,-#_c5c5eaaf41c2fb67f9a674ed2d7264f5 | p@chr8:144542829..144542857, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:168106638..168106641,+#_c5c5eaaf41c2fb67f9a674ed2d7264f5 | p93@XIRP2 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr5:172318159..172318160,+#_c5c5eaaf41c2fb67f9a674ed2d7264f5 | p@chr5:172318159..172318160, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr5:117747577..117747580,+#_c5c5eaaf41c2fb67f9a674ed2d7264f5 | p@chr5:117747577..117747580, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:168105362..168105368,+#_c5c5eaaf41c2fb67f9a674ed2d7264f5 | p46@XIRP2 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr15:51060095..51060101,+#_c5c5eaaf41c2fb67f9a674ed2d7264f5 | p@chr15:51060095..51060101, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:179399371..179399376,-#_c5c5eaaf41c2fb67f9a674ed2d7264f5 | p@chr2:179399371..179399376, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:152525581..152525588,-#_c5c5eaaf41c2fb67f9a674ed2d7264f5 | p@chr2:152525581..152525588, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr13:51335579..51335582,+#_c5c5eaaf41c2fb67f9a674ed2d7264f5 | p@chr13:51335579..51335582, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr22:36000901..36000903,-#_c5c5eaaf41c2fb67f9a674ed2d7264f5 | p@chr22:36000901..36000903, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr5:175125123..175125125,+#_c5c5eaaf41c2fb67f9a674ed2d7264f5 | p@chr5:175125123..175125125, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:168105987..168105994,+#_c5c5eaaf41c2fb67f9a674ed2d7264f5 | p54@XIRP2 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr13:51335579..51335582,+#_c5c5eaaf41c2fb67f9a674ed2d7264f5 | p@chr13:51335579..51335582, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr1:145478051..145478060,-#_c5c5eaaf41c2fb67f9a674ed2d7264f5 | p@chr1:145478051..145478060, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:179514306..179514308,-#_c5c5eaaf41c2fb67f9a674ed2d7264f5 | p@chr2:179514306..179514308, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:168104676..168104679,+#_c5c5eaaf41c2fb67f9a674ed2d7264f5 | p104@XIRP2 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr5:172318159..172318160,+#_c5c5eaaf41c2fb67f9a674ed2d7264f5 | p@chr5:172318159..172318160, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr1:145478051..145478060,-#_c5c5eaaf41c2fb67f9a674ed2d7264f5 | p@chr1:145478051..145478060, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr3:35732964..35732965,+#_1ce0bba84d838b31b1f0619639f8a1fe | p@chr3:35732964..35732965, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr12:69653866..69653876,+#_1ce0bba84d838b31b1f0619639f8a1fe | p@chr12:69653866..69653876, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr2:29398214..29398229,+#_1ce0bba84d838b31b1f0619639f8a1fe | p27@CLIP4 |
| 2.55e-98 | FFCP PHASE2:Hg19::chr12:69653866..69653876,+#_1ce0bba84d838b31b1f0619639f8a1fe | p@chr12:69653866..69653876, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr3:35732964..35732965,+#_1ce0bba84d838b31b1f0619639f8a1fe | p@chr3:35732964..35732965, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr3:69168368..69168389,-#_1ce0bba84d838b31b1f0619639f8a1fe | p@chr3:69168368..69168389, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr18:8608021..8608050,+#_1ce0bba84d838b31b1f0619639f8a1fe | p@chr18:8608021..8608050, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr2:29398214..29398229,+#_1ce0bba84d838b31b1f0619639f8a1fe | p27@CLIP4 |
| 2.55e-98 | FFCP PHASE1:Hg19::chr12:102079632..102079647,-#_1ce0bba84d838b31b1f0619639f8a1fe | p@chr12:102079632..102079647, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr6:125535391..125535409,+#_1ce0bba84d838b31b1f0619639f8a1fe | p@chr6:125535391..125535409, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr3:46924232..46924241,+#_1ce0bba84d838b31b1f0619639f8a1fe | p@chr3:46924232..46924241, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr10:97037060..97037066,-#_1ce0bba84d838b31b1f0619639f8a1fe | p@chr10:97037060..97037066, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr3:46924232..46924241,+#_1ce0bba84d838b31b1f0619639f8a1fe | p@chr3:46924232..46924241, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr10:29918007..29918031,-#_1ce0bba84d838b31b1f0619639f8a1fe | p@chr10:29918007..29918031, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr2:152566311..152566321,-#_1ce0bba84d838b31b1f0619639f8a1fe | p@chr2:152566311..152566321, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr12:122884464..122884467,-#_1ce0bba84d838b31b1f0619639f8a1fe | p38@CLIP1 |
| 2.55e-98 | FFCP PHASE2:Hg19::chr6:125535391..125535409,+#_1ce0bba84d838b31b1f0619639f8a1fe | p@chr6:125535391..125535409, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr2:168102459..168102468,+#_1ce0bba84d838b31b1f0619639f8a1fe | p73@XIRP2 |
| 2.55e-98 | FFCP PHASE1:Hg19::chr22:26299595..26299605,+#_1ce0bba84d838b31b1f0619639f8a1fe | p@chr22:26299595..26299605, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr2:168102459..168102468,+#_1ce0bba84d838b31b1f0619639f8a1fe | p73@XIRP2 |
| 2.55e-98 | FFCP PHASE1:Hg19::chr10:97037060..97037066,-#_1ce0bba84d838b31b1f0619639f8a1fe | p@chr10:97037060..97037066, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr5:95180155..95180172,+#_1ce0bba84d838b31b1f0619639f8a1fe | p@chr5:95180155..95180172, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr2:152566311..152566321,-#_1ce0bba84d838b31b1f0619639f8a1fe | p@chr2:152566311..152566321, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr12:102079632..102079647,-#_1ce0bba84d838b31b1f0619639f8a1fe | p@chr12:102079632..102079647, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr21:47769234..47769239,+#_1ce0bba84d838b31b1f0619639f8a1fe | p@chr21:47769234..47769239, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr10:29918007..29918031,-#_1ce0bba84d838b31b1f0619639f8a1fe | p@chr10:29918007..29918031, - |
