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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00004866
|DRA_sample_Accession=CAGE@SAMD00004866
|accession_numbers=CAGE;DRX007901;DRR008773;DRZ000198;DRZ001583
|accession_numbers=CAGE;DRX007901;DRR008773;DRZ000198;DRZ001583;DRZ011548;DRZ012933
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000151,CL:0000066,CL:0002371,CL:0002078,CL:0000163,CL:0000174,CL:0002174,CL:0000255,CL:0000501
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000151,CL:0000066,CL:0002371,CL:0002078,CL:0000163,CL:0000174,CL:0002174,CL:0000255,CL:0000501
Line 41: Line 41:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/granulosa%2520cell%2520tumor%2520cell%2520line%253aKGN.CNhs11740.10624-108H3.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/granulosa%2520cell%2520tumor%2520cell%2520line%253aKGN.CNhs11740.10624-108H3.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/granulosa%2520cell%2520tumor%2520cell%2520line%253aKGN.CNhs11740.10624-108H3.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/granulosa%2520cell%2520tumor%2520cell%2520line%253aKGN.CNhs11740.10624-108H3.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/granulosa%2520cell%2520tumor%2520cell%2520line%253aKGN.CNhs11740.10624-108H3.hg38.nobarcode.ctss.bed.gz
|id=FF:10624-108H3
|id=FF:10624-108H3
|is_a=EFO:0002091;;FF:0000210;;FF:0102285
|is_a=EFO:0002091;;FF:0000210;;FF:0102285
Line 46: Line 51:
|library_id=CNhs11740
|library_id=CNhs11740
|library_id_phase_based=2:CNhs11740
|library_id_phase_based=2:CNhs11740
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10624
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10624
|name=granulosa cell tumor cell line:KGN
|name=granulosa cell tumor cell line:KGN
|namespace=FANTOM5
|namespace=FANTOM5
|part_of=
|part_of=
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage="CNhs11740,LSID819,release009,COMPLETED"
|profile_hcage=CNhs11740,LSID819,release009,COMPLETED
|profile_rnaseq=
|profile_rnaseq=
|profile_srnaseq=",,,"
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 90: Line 100:
|top_motifs=HMGA1,2:1.54401233626;POU5F1:1.49704109751;NKX3-1:1.49248177018;EVI1:1.48543001462;PAX8:1.44393668466;NKX2-1,4:1.42019408994;TEF:1.33649329046;PAX4:1.1147838881;ATF6:1.06057471838;VSX1,2:1.05295146939;TEAD1:1.03710603273;MTE{core}:1.03699183366;GATA4:0.958737249513;NR6A1:0.956430630514;POU3F1..4:0.937287423995;UFEwm:0.901347057184;GTF2A1,2:0.889081574405;RXRA_VDR{dimer}:0.883058431577;TBX4,5:0.829330755197;HIC1:0.807773537723;EN1,2:0.802114677024;ZBTB16:0.769882703852;MYBL2:0.759715724292;AIRE:0.75923831346;NR3C1:0.75413729759;HOX{A5,B5}:0.748264385489;FOXD3:0.743432225336;GLI1..3:0.691364943294;HIF1A:0.656478020107;POU6F1:0.634542585874;FOXA2:0.630256644525;HOX{A4,D4}:0.607926141685;NKX6-1,2:0.600558638824;TFAP2{A,C}:0.553453717168;SRF:0.5512038126;FOXL1:0.539960609887;SOX17:0.519924672271;PRDM1:0.519338523432;TFDP1:0.511227248952;DBP:0.484041732685;TFCP2:0.477489151489;NFATC1..3:0.470654128049;ZFP161:0.464304063354;EGR1..3:0.462809093116;ZNF384:0.452244233958;T:0.447017282822;TFAP2B:0.444694032661;PITX1..3:0.410486200481;TOPORS:0.395426765802;LMO2:0.393444406408;FOXP1:0.376878635547;HOXA9_MEIS1:0.369158054901;ARID5B:0.365334824056;ZNF423:0.360217698863;TAL1_TCF{3,4,12}:0.35247186964;MAZ:0.346432089269;AHR_ARNT_ARNT2:0.322230270399;PAX3,7:0.316165567139;ZBTB6:0.297138826511;POU1F1:0.295566113635;GZF1:0.284528187599;TLX1..3_NFIC{dimer}:0.283904134005;ONECUT1,2:0.276803478438;CDC5L:0.275792797038;ZNF143:0.273701819134;TFAP4:0.251512485892;MYFfamily:0.241781812638;MED-1{core}:0.238005248251;IRF1,2:0.231958988106;SMAD1..7,9:0.220553633108;ZIC1..3:0.217634577693;GTF2I:0.202314626863;GCM1,2:0.201051446422;E2F1..5:0.198789645185;ADNP_IRX_SIX_ZHX:0.195291815989;NFE2L2:0.193256500037;XCPE1{core}:0.191328211746;RFX1:0.183476527755;SOX2:0.171665596869;LHX3,4:0.16683879212;MZF1:0.143148043493;HNF1A:0.117393867745;KLF4:0.0876226299925;NKX3-2:0.086947632744;ALX1:0.0676583035281;IKZF2:0.0611277137198;MEF2{A,B,C,D}:0.0593277796979;AR:0.0546037502072;BACH2:0.0506586574824;ESRRA:0.0479935308478;GFI1:0.0456673058085;SP1:0.0403991917424;MAFB:0.0345839885171;PATZ1:0.0295478222575;FOSL2:0.0258449029731;REST:0.0174114820221;NR5A1,2:0.0131493183371;NKX2-2,8:0.000864558647832;OCT4_SOX2{dimer}:-0.0235135904574;NHLH1,2:-0.0268893543832;FOX{D1,D2}:-0.0288758381867;ZNF148:-0.0332312790281;GFI1B:-0.0368643493729;LEF1_TCF7_TCF7L1,2:-0.0412789897424;XBP1:-0.045815974273;HOX{A6,A7,B6,B7}:-0.0604203367365;NRF1:-0.0634240500515;HBP1_HMGB_SSRP1_UBTF:-0.0712034449485;NKX2-3_NKX2-5:-0.0802509738858;MYB:-0.0805558637755;HAND1,2:-0.0836672797052;NFE2L1:-0.0851186958236;FOX{F1,F2,J1}:-0.0899481502083;FOS_FOS{B,L1}_JUN{B,D}:-0.0921051740518;PAX6:-0.0979139634818;NR1H4:-0.10425047325;SNAI1..3:-0.105825649534;TBP:-0.124777239318;PAX5:-0.139022251611;PPARG:-0.141235234587;BREu{core}:-0.162461410058;EP300:-0.164786149788;MYOD1:-0.165345701703;GATA6:-0.17340451516;SOX{8,9,10}:-0.186434129594;STAT2,4,6:-0.194002979184;ALX4:-0.194993747377;IKZF1:-0.201161126595;NFY{A,B,C}:-0.201301423109;TP53:-0.203199157464;CREB1:-0.2095788451;BPTF:-0.211182646578;ATF4:-0.219110625421;bHLH_family:-0.230262854567;POU2F1..3:-0.241100552457;ATF5_CREB3:-0.241614791923;HLF:-0.249091083629;HNF4A_NR2F1,2:-0.266943425405;NFKB1_REL_RELA:-0.278986493574;ELK1,4_GABP{A,B1}:-0.306955044286;PAX1,9:-0.328374833837;CUX2:-0.334008624205;NFE2:-0.334064749495;FOXO1,3,4:-0.342504277122;ZEB1:-0.342942903506;RXR{A,B,G}:-0.347661558765;HES1:-0.351085781664;FOXP3:-0.360248020413;CEBPA,B_DDIT3:-0.374352491461;DMAP1_NCOR{1,2}_SMARC:-0.376743226221;PAX2:-0.383832096217;IRF7:-0.385461905229;NFIX:-0.389226610402;STAT5{A,B}:-0.398083421248;HMX1:-0.402392764432;HSF1,2:-0.411697882009;ESR1:-0.414824686815;RREB1:-0.438146462495;SPZ1:-0.448189655955;ZNF238:-0.46369199554;MTF1:-0.476995853584;SOX5:-0.484811142367;NFIL3:-0.503479277008;SREBF1,2:-0.513119397192;TGIF1:-0.544548386759;CRX:-0.547683521843;FOXN1:-0.555720993916;RORA:-0.558376584532;RUNX1..3:-0.57094438019;SPIB:-0.576974966016;YY1:-0.597579595043;ETS1,2:-0.619534446424;ATF2:-0.639582672374;FOXM1:-0.643771943219;SPI1:-0.682087249716;JUN:-0.686075420564;CDX1,2,4:-0.689554089671;STAT1,3:-0.691450834686;NANOG:-0.713551344164;ELF1,2,4:-0.723355924636;EBF1:-0.749050148561;NANOG{mouse}:-0.850303340607;PDX1:-0.971915299612;PRRX1,2:-1.02944584264;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.07166189155;RFX2..5_RFXANK_RFXAP:-1.0881269854;TLX2:-1.10042487581;FOX{I1,J2}:-1.11574310035;PBX1:-1.26720025468;RBPJ:-1.4672822168;FOXQ1:-1.61933635968;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.64912357937
|top_motifs=HMGA1,2:1.54401233626;POU5F1:1.49704109751;NKX3-1:1.49248177018;EVI1:1.48543001462;PAX8:1.44393668466;NKX2-1,4:1.42019408994;TEF:1.33649329046;PAX4:1.1147838881;ATF6:1.06057471838;VSX1,2:1.05295146939;TEAD1:1.03710603273;MTE{core}:1.03699183366;GATA4:0.958737249513;NR6A1:0.956430630514;POU3F1..4:0.937287423995;UFEwm:0.901347057184;GTF2A1,2:0.889081574405;RXRA_VDR{dimer}:0.883058431577;TBX4,5:0.829330755197;HIC1:0.807773537723;EN1,2:0.802114677024;ZBTB16:0.769882703852;MYBL2:0.759715724292;AIRE:0.75923831346;NR3C1:0.75413729759;HOX{A5,B5}:0.748264385489;FOXD3:0.743432225336;GLI1..3:0.691364943294;HIF1A:0.656478020107;POU6F1:0.634542585874;FOXA2:0.630256644525;HOX{A4,D4}:0.607926141685;NKX6-1,2:0.600558638824;TFAP2{A,C}:0.553453717168;SRF:0.5512038126;FOXL1:0.539960609887;SOX17:0.519924672271;PRDM1:0.519338523432;TFDP1:0.511227248952;DBP:0.484041732685;TFCP2:0.477489151489;NFATC1..3:0.470654128049;ZFP161:0.464304063354;EGR1..3:0.462809093116;ZNF384:0.452244233958;T:0.447017282822;TFAP2B:0.444694032661;PITX1..3:0.410486200481;TOPORS:0.395426765802;LMO2:0.393444406408;FOXP1:0.376878635547;HOXA9_MEIS1:0.369158054901;ARID5B:0.365334824056;ZNF423:0.360217698863;TAL1_TCF{3,4,12}:0.35247186964;MAZ:0.346432089269;AHR_ARNT_ARNT2:0.322230270399;PAX3,7:0.316165567139;ZBTB6:0.297138826511;POU1F1:0.295566113635;GZF1:0.284528187599;TLX1..3_NFIC{dimer}:0.283904134005;ONECUT1,2:0.276803478438;CDC5L:0.275792797038;ZNF143:0.273701819134;TFAP4:0.251512485892;MYFfamily:0.241781812638;MED-1{core}:0.238005248251;IRF1,2:0.231958988106;SMAD1..7,9:0.220553633108;ZIC1..3:0.217634577693;GTF2I:0.202314626863;GCM1,2:0.201051446422;E2F1..5:0.198789645185;ADNP_IRX_SIX_ZHX:0.195291815989;NFE2L2:0.193256500037;XCPE1{core}:0.191328211746;RFX1:0.183476527755;SOX2:0.171665596869;LHX3,4:0.16683879212;MZF1:0.143148043493;HNF1A:0.117393867745;KLF4:0.0876226299925;NKX3-2:0.086947632744;ALX1:0.0676583035281;IKZF2:0.0611277137198;MEF2{A,B,C,D}:0.0593277796979;AR:0.0546037502072;BACH2:0.0506586574824;ESRRA:0.0479935308478;GFI1:0.0456673058085;SP1:0.0403991917424;MAFB:0.0345839885171;PATZ1:0.0295478222575;FOSL2:0.0258449029731;REST:0.0174114820221;NR5A1,2:0.0131493183371;NKX2-2,8:0.000864558647832;OCT4_SOX2{dimer}:-0.0235135904574;NHLH1,2:-0.0268893543832;FOX{D1,D2}:-0.0288758381867;ZNF148:-0.0332312790281;GFI1B:-0.0368643493729;LEF1_TCF7_TCF7L1,2:-0.0412789897424;XBP1:-0.045815974273;HOX{A6,A7,B6,B7}:-0.0604203367365;NRF1:-0.0634240500515;HBP1_HMGB_SSRP1_UBTF:-0.0712034449485;NKX2-3_NKX2-5:-0.0802509738858;MYB:-0.0805558637755;HAND1,2:-0.0836672797052;NFE2L1:-0.0851186958236;FOX{F1,F2,J1}:-0.0899481502083;FOS_FOS{B,L1}_JUN{B,D}:-0.0921051740518;PAX6:-0.0979139634818;NR1H4:-0.10425047325;SNAI1..3:-0.105825649534;TBP:-0.124777239318;PAX5:-0.139022251611;PPARG:-0.141235234587;BREu{core}:-0.162461410058;EP300:-0.164786149788;MYOD1:-0.165345701703;GATA6:-0.17340451516;SOX{8,9,10}:-0.186434129594;STAT2,4,6:-0.194002979184;ALX4:-0.194993747377;IKZF1:-0.201161126595;NFY{A,B,C}:-0.201301423109;TP53:-0.203199157464;CREB1:-0.2095788451;BPTF:-0.211182646578;ATF4:-0.219110625421;bHLH_family:-0.230262854567;POU2F1..3:-0.241100552457;ATF5_CREB3:-0.241614791923;HLF:-0.249091083629;HNF4A_NR2F1,2:-0.266943425405;NFKB1_REL_RELA:-0.278986493574;ELK1,4_GABP{A,B1}:-0.306955044286;PAX1,9:-0.328374833837;CUX2:-0.334008624205;NFE2:-0.334064749495;FOXO1,3,4:-0.342504277122;ZEB1:-0.342942903506;RXR{A,B,G}:-0.347661558765;HES1:-0.351085781664;FOXP3:-0.360248020413;CEBPA,B_DDIT3:-0.374352491461;DMAP1_NCOR{1,2}_SMARC:-0.376743226221;PAX2:-0.383832096217;IRF7:-0.385461905229;NFIX:-0.389226610402;STAT5{A,B}:-0.398083421248;HMX1:-0.402392764432;HSF1,2:-0.411697882009;ESR1:-0.414824686815;RREB1:-0.438146462495;SPZ1:-0.448189655955;ZNF238:-0.46369199554;MTF1:-0.476995853584;SOX5:-0.484811142367;NFIL3:-0.503479277008;SREBF1,2:-0.513119397192;TGIF1:-0.544548386759;CRX:-0.547683521843;FOXN1:-0.555720993916;RORA:-0.558376584532;RUNX1..3:-0.57094438019;SPIB:-0.576974966016;YY1:-0.597579595043;ETS1,2:-0.619534446424;ATF2:-0.639582672374;FOXM1:-0.643771943219;SPI1:-0.682087249716;JUN:-0.686075420564;CDX1,2,4:-0.689554089671;STAT1,3:-0.691450834686;NANOG:-0.713551344164;ELF1,2,4:-0.723355924636;EBF1:-0.749050148561;NANOG{mouse}:-0.850303340607;PDX1:-0.971915299612;PRRX1,2:-1.02944584264;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.07166189155;RFX2..5_RFXANK_RFXAP:-1.0881269854;TLX2:-1.10042487581;FOX{I1,J2}:-1.11574310035;PBX1:-1.26720025468;RBPJ:-1.4672822168;FOXQ1:-1.61933635968;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.64912357937
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10624-108H3;search_select_hide=table117:FF:10624-108H3
}}
}}

Latest revision as of 14:31, 3 June 2020

Name:granulosa cell tumor cell line:KGN
Species:Human (Homo sapiens)
Library ID:CNhs11740
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueovary
dev stageNA
sexfemale
age69
cell typegranulosa cell
cell lineKGN
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004866
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11740 CAGE DRX007901 DRR008773
Accession ID Hg19

Library idBAMCTSS
CNhs11740 DRZ000198 DRZ001583
Accession ID Hg38

Library idBAMCTSS
CNhs11740 DRZ011548 DRZ012933
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.271
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
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C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11740

Jaspar motifP-value
MA0002.20.0636
MA0003.10.206
MA0004.10.0164
MA0006.10.512
MA0007.10.386
MA0009.10.0244
MA0014.10.416
MA0017.10.00268
MA0018.27.33118e-4
MA0019.10.364
MA0024.10.848
MA0025.17.51882e-4
MA0027.10.8
MA0028.11.27045e-4
MA0029.10.243
MA0030.10.311
MA0031.10.354
MA0035.20.354
MA0038.10.268
MA0039.20.0663
MA0040.10.505
MA0041.10.477
MA0042.10.511
MA0043.11.05496e-4
MA0046.10.572
MA0047.20.251
MA0048.10.614
MA0050.10.623
MA0051.10.0765
MA0052.10.351
MA0055.10.271
MA0057.10.91
MA0058.16.20615e-4
MA0059.10.0849
MA0060.10.11
MA0061.10.00107
MA0062.21.19327e-11
MA0065.28.40474e-4
MA0066.10.386
MA0067.18.82298e-4
MA0068.10.2
MA0069.10.679
MA0070.10.384
MA0071.10.624
MA0072.10.521
MA0073.10.916
MA0074.10.976
MA0076.13.82939e-6
MA0077.10.0826
MA0078.10.791
MA0079.20.401
MA0080.21.57868e-12
MA0081.14.08274e-5
MA0083.10.0662
MA0084.10.415
MA0087.10.215
MA0088.10.452
MA0090.11.27665e-5
MA0091.10.0832
MA0092.10.598
MA0093.10.0214
MA0099.20.0221
MA0100.10.358
MA0101.10.00735
MA0102.20.00624
MA0103.10.115
MA0104.20.0115
MA0105.11.40266e-4
MA0106.10.974
MA0107.10.0253
MA0108.20.0897
MA0111.10.517
MA0112.20.104
MA0113.10.651
MA0114.10.00182
MA0115.10.146
MA0116.10.00217
MA0117.10.509
MA0119.10.533
MA0122.10.126
MA0124.10.177
MA0125.10.0545
MA0131.10.478
MA0135.10.00431
MA0136.13.14901e-15
MA0137.20.0107
MA0138.20.0881
MA0139.10.131
MA0140.10.82
MA0141.10.713
MA0142.10.74
MA0143.10.18
MA0144.10.0244
MA0145.10.313
MA0146.10.0163
MA0147.10.0266
MA0148.10.375
MA0149.10.362
MA0150.10.0484
MA0152.10.0122
MA0153.10.74
MA0154.10.00716
MA0155.10.413
MA0156.15.80838e-15
MA0157.10.314
MA0159.10.169
MA0160.10.283
MA0162.10.9
MA0163.11.44859e-4
MA0164.10.794
MA0258.10.463
MA0259.10.599



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11740

Novel motifP-value
10.436
100.157
1000.78
1010.698
1020.199
1030.0651
1040.692
1050.111
1060.233
1070.0485
1080.898
1090.0766
110.085
1100.45
1110.247
1120.031
1130.0315
1140.947
1150.0304
1160.884
1170.00125
1180.877
1190.808
120.00551
1200.918
1210.0543
1220.3
1230.793
1240.641
1250.999
1260.276
1270.521
1280.897
1290.0802
130.105
1300.262
1310.451
1320.832
1330.173
1340.488
1350.963
1360.538
1370.0263
1380.399
1390.188
140.308
1400.587
1410.167
1420.619
1430.688
1440.65
1450.273
1460.7
1470.0459
1480.398
1490.56
150.71
1500.947
1510.989
1520.832
1530.181
1540.637
1550.0246
1560.172
1570.296
1580.00156
1590.185
160.211
1600.638
1610.998
1620.997
1630.44
1640.588
1650.821
1660.00228
1670.684
1680.256
1690.138
170.79
180.432
190.684
20.97
200.404
210.315
220.0971
230.574
240.388
250.189
260.704
270.531
280.702
290.431
30.301
300.769
310.535
326.87189e-5
330.351
340.742
350.418
360.262
370.0168
380.31
390.493
40.533
400.194
410.721
420.399
430.407
440.32
450.25
460.657
470.236
480.324
490.232
50.92
500.857
510.383
520.848
530.24
540.936
550.692
560.853
570.702
580.079
590.357
60.447
600.217
610.993
620.47
630.713
640.33
650.19
660.964
670.981
680.416
690.848
70.0951
700.817
710.0516
720.0678
730.394
740.0338
750.0804
760.0865
770.664
780.054
790.0664
80.566
800.0579
810.595
820.934
830.913
840.657
850.916
860.553
870.894
880.949
890.983
90.0844
900.42
910.988
920.925
930.727
940.955
955.17526e-4
960.714
970.42
980.01
990.183



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11740


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000151 (secretory cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0002078 (meso-epithelial cell)
0000163 (endocrine cell)
0000174 (steroid hormone secreting cell)
0002174 (follicular cell of ovary)
0000255 (eukaryotic cell)
0000501 (granulosa cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
193 (reproductive organ cancer)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0102285 (granulosa cell line sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000222 (mesodermal cell)

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