FFCP PHASE1:Mm9::chr19:41922723..41922736,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr19:41922723..41922736,-
|short_description=p2@Frat2
|description=CAGE_peak_2_at_Frat2_5end
|association_with_transcript=-101bp_to_ENSMUST00000059231,NM_17760...") |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=212398 | |EntrezGene=212398 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=7 | |||
|TSSclassifier=NA | |||
|UniProt=Q8K025,B2RU64 | |UniProt=Q8K025,B2RU64 | ||
|association_with_transcript=-101bp_to_ENSMUST00000059231,NM_177603,uc008hmj.2_5end | |||
|cluster_id=chr19:41922723..41922736,- | |||
|description=CAGE_peak_2_at_Frat2_5end | |||
|id=chr19:41922723..41922736,- | |||
|ontology_enrichment_celltype=CL:0000063!4.66e-15!66;CL:0000988!4.40e-13!32;CL:0002032!4.40e-13!32;CL:0000037!4.40e-13!32;CL:0000566!4.40e-13!32;CL:0000837!4.40e-13!32;CL:0002031!7.20e-09!25;CL:0002320!1.19e-08!46;CL:0000134!1.19e-08!46;CL:0000838!2.35e-08!12;CL:0000219!2.75e-08!54;CL:0002563!3.21e-08!9;CL:0002251!3.21e-08!9;CL:0000084!5.72e-08!11;CL:0000827!5.72e-08!11;CL:0000542!1.83e-07!13;CL:0000051!1.83e-07!13;CL:0000738!2.30e-07!17;CL:0002087!2.30e-07!17;CL:0000066!3.39e-07!25;CL:0000144!5.05e-07!121;CL:0000012!5.05e-07!121;CL:0000049!5.58e-07!19 | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,6.48e-26,9;CL:0002251,6.48e-26,9;CL:0000066,4.95e-20,25;CL:0000239,1.59e-15,6;CL:0000677,1.59e-15,6;CL:0000584,1.59e-15,6;CL:0002076,4.12e-15,15;CL:0000223,4.18e-14,20;CL:0000075,2.78e-13,7;CL:0000682,2.13e-12,3;CL:0002250,3.29e-12,3;CL:0000473,6.66e-09,7;CL:0000049,2.12e-08,19;CL:0000557,2.82e-08,7;CL:0000988,5.70e-08,32;CL:0002032,5.70e-08,32;CL:0000037,5.70e-08,32;CL:0000837,5.70e-08,32 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000344!6.36e-13!15;UBERON:0004923!6.05e-12!24;UBERON:0001242!3.47e-11!13;UBERON:0000060!3.47e-11!13;UBERON:0001262!3.47e-11!13;UBERON:0004786!3.47e-11!13;UBERON:0000485!2.84e-09!11;UBERON:0002384!1.19e-08!46;UBERON:0003350!3.21e-08!9;UBERON:0004808!3.21e-08!9;UBERON:0001277!3.21e-08!9;UBERON:0005409!2.74e-07!59 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003350,6.48e-26,9;UBERON:0004808,6.48e-26,9;UBERON:0001277,6.48e-26,9;UBERON:0000344,1.60e-23,15;UBERON:0001242,2.84e-22,13;UBERON:0001262,2.84e-22,13;UBERON:0004786,2.84e-22,13;UBERON:0000485,5.22e-21,11;UBERON:0004923,4.39e-14,24;UBERON:0000160,1.62e-10,31 | |||
|phase1_expression=0.160148847104794,1.39590163055744,2.27499619694768,0,5.00895729946347,2.51818907867835,2.33612640595526,0.516493293766305,21.2590970449017,36.280001579909,0,0.239316476986009,0.342401459862411,0.174840804837995,0.666219523631325,1.01237633694913,0.699561878128147,0.315462165358238,0,0.42438965179803,0,0.695036658406197,0.522399578277871,0.639969691173627,1.60586496747019,3.44539178469012,2.58457197695445,3.01659725760245,0.380046838912748,2.52030129759931,0.665191531965914,0,0,0,2.88851619751275,2.1610503896604,4.69589519403449,0,0,0,0,0,0,0,0,0,0,0.65407546914134,0,0,0,0,0.167782606057736,0.725362142011344,0.672187598284928,0,0,0,0,0,0,0,0,0,0,0,0.299600110518405,1.15265491596466,0.103689612308478,0,0,0,0,0.122490799214954,0,0,0,0,0,0.131886287730194,0,0,0,0,0,0,0,0,0.075726193333184,0.453429360640713,3.47837386442013,0,0.679971333707751,0,0,0,0.140444420131752,0,0,0,0.563373679106722,0,0,0,0,0,0,0.45673551887624,0,0,0.173485326766136,0,0,0,0,0,0,0,0,0,0.220841518460394,0.484875253135222,0,0,0,1.53274233125155,0.599075622529601,2.99951365496704,1.27070227073065,0,0,0,0,0,0,0,0,0.124406970610093,0,0,0,0.459804208866946,0.180062129805349,0.30140963567143,0.136072998302656,0,0.468508622798644,0,0,0,0,0,0,0,0,0,2.80885274925294,1.02939162845886,1.13665399758237,0,0.234526059981096,0,0,0,0,0,0,0,0,0,0.0810688095458557,0,0,0,0,0,0.330418782983798,0.264450566663544,0,0.232236671860439,0.257734922644187,0.201683524623343,0.22237804384487,0,0,0.164698954724011,0,0,0,0.898819408654221,0.432276099749388,0.199141273254367,0,0.114248512609729,0,0,0,0,0,0,0,0,0,0.333690211432188,0,0,0.405720242777006,0,0,0.287696137450811,0.162135226775035,0,0,0,0,0,0.179397413521912,0,0,0,0.162964976442026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252470927204373,0,0.390438744296638,0,0,0,0,0,0,0,0,0.141940085208269,0.178065603667255,0.162886959353576,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.119372344003136,0,0.291480836629851,0,0.341741761595705,0,0.185194527369712,0.565105371014073,0.136694227721025,0.457556346413045,0.509935289981566,0.839708713941948,0.138199973804424,0,0.158167996790568,0,0.108005340821801,0,0,0,0,0,0.388844919875379,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102710957164827,0.129920822977795,0,0,0,0,0.100966449948148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115884325944855,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118635018124174,0,0,0,0,0,0,0.214871054048298,0,0.220591419119515,0 | |phase1_expression=0.160148847104794,1.39590163055744,2.27499619694768,0,5.00895729946347,2.51818907867835,2.33612640595526,0.516493293766305,21.2590970449017,36.280001579909,0,0.239316476986009,0.342401459862411,0.174840804837995,0.666219523631325,1.01237633694913,0.699561878128147,0.315462165358238,0,0.42438965179803,0,0.695036658406197,0.522399578277871,0.639969691173627,1.60586496747019,3.44539178469012,2.58457197695445,3.01659725760245,0.380046838912748,2.52030129759931,0.665191531965914,0,0,0,2.88851619751275,2.1610503896604,4.69589519403449,0,0,0,0,0,0,0,0,0,0,0.65407546914134,0,0,0,0,0.167782606057736,0.725362142011344,0.672187598284928,0,0,0,0,0,0,0,0,0,0,0,0.299600110518405,1.15265491596466,0.103689612308478,0,0,0,0,0.122490799214954,0,0,0,0,0,0.131886287730194,0,0,0,0,0,0,0,0,0.075726193333184,0.453429360640713,3.47837386442013,0,0.679971333707751,0,0,0,0.140444420131752,0,0,0,0.563373679106722,0,0,0,0,0,0,0.45673551887624,0,0,0.173485326766136,0,0,0,0,0,0,0,0,0,0.220841518460394,0.484875253135222,0,0,0,1.53274233125155,0.599075622529601,2.99951365496704,1.27070227073065,0,0,0,0,0,0,0,0,0.124406970610093,0,0,0,0.459804208866946,0.180062129805349,0.30140963567143,0.136072998302656,0,0.468508622798644,0,0,0,0,0,0,0,0,0,2.80885274925294,1.02939162845886,1.13665399758237,0,0.234526059981096,0,0,0,0,0,0,0,0,0,0.0810688095458557,0,0,0,0,0,0.330418782983798,0.264450566663544,0,0.232236671860439,0.257734922644187,0.201683524623343,0.22237804384487,0,0,0.164698954724011,0,0,0,0.898819408654221,0.432276099749388,0.199141273254367,0,0.114248512609729,0,0,0,0,0,0,0,0,0,0.333690211432188,0,0,0.405720242777006,0,0,0.287696137450811,0.162135226775035,0,0,0,0,0,0.179397413521912,0,0,0,0.162964976442026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252470927204373,0,0.390438744296638,0,0,0,0,0,0,0,0,0.141940085208269,0.178065603667255,0.162886959353576,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.119372344003136,0,0.291480836629851,0,0.341741761595705,0,0.185194527369712,0.565105371014073,0.136694227721025,0.457556346413045,0.509935289981566,0.839708713941948,0.138199973804424,0,0.158167996790568,0,0.108005340821801,0,0,0,0,0,0.388844919875379,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102710957164827,0.129920822977795,0,0,0,0,0.100966449948148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115884325944855,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118635018124174,0,0,0,0,0,0,0.214871054048298,0,0.220591419119515,0 | ||
|short_description=p2@Frat2 | |||
}} | }} |
Latest revision as of 18:48, 25 September 2015
Short description: | p2@Frat2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Frat2_5end |
Coexpression cluster: | MCL_coexpression_mm9:7 |
Association with transcript: | -101bp_to_ENSMUST00000059231, NM_177603, uc008hmj.2_5end |
EntrezGene: | Frat2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 6.48e-26 | 9 |
epithelial cell of alimentary canal | 6.48e-26 | 9 |
epithelial cell | 4.95e-20 | 25 |
brush border epithelial cell | 1.59e-15 | 6 |
gut absorptive cell | 1.59e-15 | 6 |
enterocyte | 1.59e-15 | 6 |
endo-epithelial cell | 4.12e-15 | 15 |
endodermal cell | 4.18e-14 | 20 |
columnar/cuboidal epithelial cell | 2.78e-13 | 7 |
M cell of gut | 2.13e-12 | 3 |
intestinal crypt stem cell | 3.29e-12 | 3 |
defensive cell | 6.66e-09 | 7 |
common myeloid progenitor | 2.12e-08 | 19 |
granulocyte monocyte progenitor cell | 2.82e-08 | 7 |
hematopoietic cell | 5.70e-08 | 32 |
hematopoietic oligopotent progenitor cell | 5.70e-08 | 32 |
hematopoietic stem cell | 5.70e-08 | 32 |
hematopoietic multipotent progenitor cell | 5.70e-08 | 32 |
Ontology term | p-value | n |
---|---|---|
epithelium of mucosa | 6.48e-26 | 9 |
gastrointestinal system epithelium | 6.48e-26 | 9 |
intestinal epithelium | 6.48e-26 | 9 |
mucosa | 1.60e-23 | 15 |
intestinal mucosa | 2.84e-22 | 13 |
wall of intestine | 2.84e-22 | 13 |
gastrointestinal system mucosa | 2.84e-22 | 13 |
simple columnar epithelium | 5.22e-21 | 11 |
organ component layer | 4.39e-14 | 24 |
intestine | 1.62e-10 | 31 |