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{{UBERON
{{UBERON
|id=UBERON:0002257
|alt_id=UBERON:FMA_77431-MA_0001134
|name=ventral horn of spinal cord
|namespace=
|def="the ventral grey column of the spinal cord[MP]. The neurons of the ventral region of the mature spinal cord participate in motor output[GO]." [GO:0021517, MP:0005112]
|xref=EMAPA:18575;;FMA:256541;;MA:0001134;;ncithesaurus:Ventral_Horn_of_the_Spinal_Cord;;NIF_GrossAnatomy:birnlex_2668;;SCTID:279443000;;VHOG:0001288;;ZFA:0000702
|is_a=UBERON:0001948
|synonym="anterior gray column of spinal cord" EXACT [FMA:256541];;"anterior gray horn of spinal cord" EXACT [FMA:256541];;"anterior grey column of spinal cord" EXACT [];;"anterior horn" EXACT [NIF_GrossAnatomy:birnlex_2668];;"spinal cord anterior horn" EXACT [NIF_GrossAnatomy:birnlex_2668];;"spinal cord ventral horn" EXACT [];;"ventral gray column of spinal cord" EXACT [FMA:256541];;"ventral gray matter of spinal cord" EXACT [FMA:256541];;"ventral grey column of spinal cord" EXACT [];;"ventral grey horn" EXACT [NIF_GrossAnatomy:birnlex_2668];;"ventral horn spinal cord" EXACT [ZFA:0000702];;"ventral region of spinal cord" EXACT [];;"ventral spinal cord" EXACT []
|comment=This class was created automatically from a combination of ontologies
|comment=This class was created automatically from a combination of ontologies
|alt_id=UBERON:FMA_77431-MA_0001134
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="the ventral grey column of the spinal cord[MP]. The neurons of the ventral region of the mature spinal cord participate in motor output[GO]." [GO:0021517, MP:0005112]
|subset=vertebrate_core
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0002257
|is_a=UBERON:0015212 ;;UBERON:0016550
|is_obsolete=
|located_in=
|located_in=
|name=ventral horn of spinal cord
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0002315
|part_of=UBERON:0002315
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.obo.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|subset=vertebrate_core
|synonym="anterior gray column of spinal cord" EXACT [FMA:256541];;"anterior gray horn of spinal cord" EXACT [FMA:256541];;"anterior grey column of spinal cord" EXACT [];;"anterior horn" EXACT [NIF_GrossAnatomy:birnlex_2668];;"spinal cord anterior horn" EXACT [NIF_GrossAnatomy:birnlex_2668];;"spinal cord ventral horn" EXACT [];;"ventral gray column of spinal cord" EXACT [FMA:256541];;"ventral gray matter of spinal cord" EXACT [FMA:256541];;"ventral grey column of spinal cord" EXACT [];;"ventral grey horn" EXACT [NIF_GrossAnatomy:birnlex_2668];;"ventral horn spinal cord" EXACT [ZFA:0000702];;"ventral region of spinal cord" EXACT [];;"ventral spinal cord" EXACT []
|union_of=
|xref=EMAPA:18575;;FMA:256541;;MA:0001134;;ncithesaurus:Ventral_Horn_of_the_Spinal_Cord;;NIF_GrossAnatomy:birnlex_2668;;SCTID:279443000;;TAO:0000702;;VHOG:0001288;;ZFA:0000702
}}
}}

Latest revision as of 17:28, 12 September 2014

Name:ventral horn of spinal cord
Namespace:FANTOM
Definition:"the ventral grey column of the spinal cord[MP]. The neurons of the ventral region of the mature spinal cord participate in motor output[GO]." [GO:0021517, MP:0005112]
Xrefs:
links:

EMAPA:18575
FMA:256541
MA:0001134
ncithesaurus:Ventral_Horn_of_the_Spinal_Cord
NIF_GrossAnatomy:birnlex_2668
SCTID:279443000
TAO:0000702
VHOG:0001288

ZFA:0000702
Synonyms: "anterior gray column of spinal cord" EXACT [FMA:256541]
"anterior gray horn of spinal cord" EXACT [FMA:256541]
"anterior grey column of spinal cord" EXACT []
"anterior horn" EXACT [NIF_GrossAnatomy:birnlex_2668]
"spinal cord anterior horn" EXACT [NIF_GrossAnatomy:birnlex_2668]
"spinal cord ventral horn" EXACT []
"ventral gray column of spinal cord" EXACT [FMA:256541]
"ventral gray matter of spinal cord" EXACT [FMA:256541]
"ventral grey column of spinal cord" EXACT []
"ventral grey horn" EXACT [NIF_GrossAnatomy:birnlex_2668]
"ventral horn spinal cord" EXACT [ZFA:0000702]
"ventral region of spinal cord" EXACT []
"ventral spinal cord" EXACT []
Comments:This class was created automatically from a combination of ontologies
Alt_id: UBERON:FMA_77431-MA_0001134
Subset: vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0015212(lateral structure),UBERON:0016550(spinal cord column)
part_of:UBERON:0002315(gray matter of spinal cord)



Children

part of:CL:0002612 (neuron of the ventral spinal cord)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Mouse (Mus musculus)

  • 11648-122E1 (Mouse Neurons - ventral spinal cord, donor3)
  • 11725-123D6 (Mouse Neurons - ventral spinal cord, donor1)
  • 11743-123F6 (Mouse Neurons - ventral spinal cord, donor2)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002257 (ventral horn of spinal cord), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.33e-65FFCP PHASE1:Mm9::chr11:96148092..96148105,+#_2a573739aea57452f5d021ebb1899d54p@chr11:96148092..96148105, +
1.33e-65FFCP PHASE2:Mm9::chr11:96148092..96148105,+#_2a573739aea57452f5d021ebb1899d54p@chr11:96148092..96148105, +
2.21e-65FFCP PHASE1:Mm9::chr7:94732458..94732467,+#_dd8ef7587f20725d2ee5725210d6956ep13@Grm5
2.21e-65FFCP PHASE2:Mm9::chr7:94732458..94732467,+#_dd8ef7587f20725d2ee5725210d6956ep13@Grm5
3.28e-58FFCP PHASE1:Mm9::chr5:23665663..23665666,+#_63c32c5b57ee44de986efe1a1aa0df5ap@chr5:23665663..23665666, +
3.28e-58FFCP PHASE2:Mm9::chr5:23665663..23665666,+#_63c32c5b57ee44de986efe1a1aa0df5ap@chr5:23665663..23665666, +
4.9e-53FFCP PHASE2:Mm9::chr5:77527885..77527900,+#_8dea0509d24c490659d1c5b57b6383a9p@chr5:77527885..77527900, +
4.9e-53FFCP PHASE1:Mm9::chr5:77527885..77527900,+#_8dea0509d24c490659d1c5b57b6383a9p@chr5:77527885..77527900, +
7.35e-53FFCP PHASE1:Mm9::chr12:47797986..47798011,-#_ccdd79178b5a949c734b7b2f9db1011dp@chr12:47797986..47798011, -
7.35e-53FFCP PHASE2:Mm9::chr12:47797986..47798011,-#_ccdd79178b5a949c734b7b2f9db1011dp@chr12:47797986..47798011, -
1.1e-52FFCP PHASE2:Mm9::chr18:84268738..84268777,-#_f9ddc57ad1debac66326e314df245f60p@chr18:84268738..84268777, -
1.1e-52FFCP PHASE1:Mm9::chr14:33413108..33413118,+#_f9ddc57ad1debac66326e314df245f60p3@Prrxl1
1.1e-52FFCP PHASE1:Mm9::chr18:84268738..84268777,-#_f9ddc57ad1debac66326e314df245f60p@chr18:84268738..84268777, -
1.1e-52FFCP PHASE2:Mm9::chr14:33413108..33413118,+#_f9ddc57ad1debac66326e314df245f60p3@Prrxl1
1.65e-52FFCP PHASE1:Mm9::chr11:96608388..96608420,+#_84d9f8bcc370fc544e917a9b4262b95bp@chr11:96608388..96608420, +
1.65e-52FFCP PHASE2:Mm9::chr10:101630272..101630276,+#_84d9f8bcc370fc544e917a9b4262b95bp@chr10:101630272..101630276, +
1.65e-52FFCP PHASE1:Mm9::chr10:101630272..101630276,+#_84d9f8bcc370fc544e917a9b4262b95bp@chr10:101630272..101630276, +
1.65e-52FFCP PHASE2:Mm9::chr11:96608388..96608420,+#_84d9f8bcc370fc544e917a9b4262b95bp@chr11:96608388..96608420, +
1.66e-44FFCP PHASE2:Mm9::chr11:96143545..96143556,+#_d4bf763022eb9bbc41feebad7a1134c1p6@Hoxb8
1.66e-44FFCP PHASE1:Mm9::chr11:96143545..96143556,+#_d4bf763022eb9bbc41feebad7a1134c1p6@Hoxb8
1.17e-38FFCP PHASE1:Mm9::chr2:74530108..74530131,+#_ed42574ec2744af697484aaf4af65084p@chr2:74530108..74530131, +
1.17e-38FFCP PHASE2:Mm9::chr2:74530108..74530131,+#_ed42574ec2744af697484aaf4af65084p@chr2:74530108..74530131, +
2.09e-38FFCP PHASE1:Mm9::chr11:96160098..96160112,+#_7582374ba99e2805528635847fccd655p8@Hoxb6
2.09e-38FFCP PHASE2:Mm9::chr11:96160098..96160112,+#_7582374ba99e2805528635847fccd655p8@Hoxb6
3.73e-38FFCP PHASE1:Mm9::chr2:74529917..74529926,+#_bd2aa38569741fd6c092de4eecffc1d2p5@Hoxd10
3.73e-38FFCP PHASE1:Mm9::chr11:96132544..96132553,+#_bd2aa38569741fd6c092de4eecffc1d2p6@Hoxb9
3.73e-38FFCP PHASE2:Mm9::chr11:96132544..96132553,+#_bd2aa38569741fd6c092de4eecffc1d2p6@Hoxb9
3.73e-38FFCP PHASE2:Mm9::chr2:74529917..74529926,+#_bd2aa38569741fd6c092de4eecffc1d2p5@Hoxd10
2.8e-37FFCP PHASE2:Mm9::chr7:6659121..6659133,-#_478a23b7b908ce4f81e0b7a7aab8e123p@chr7:6659121..6659133, -
2.8e-37FFCP PHASE1:Mm9::chr7:6659121..6659133,-#_478a23b7b908ce4f81e0b7a7aab8e123p@chr7:6659121..6659133, -
3.67e-34FFCP PHASE1:Mm9::chr11:96132456..96132467,+#_d69333226542cfda4278ef6e4163dccfp4@Hoxb9
3.67e-34FFCP PHASE2:Mm9::chr11:96132456..96132467,+#_d69333226542cfda4278ef6e4163dccfp4@Hoxb9
7.89e-34FFCP PHASE2:Mm9::chr12:110843236..110843239,+#_7d0b9775b6560ebad8be75f01211ec57p@chr12:110843236..110843239, +
7.89e-34FFCP PHASE1:Mm9::chr12:110843236..110843239,+#_7d0b9775b6560ebad8be75f01211ec57p@chr12:110843236..110843239, +
5.97e-33FFCP PHASE1:Mm9::chr7:57165602..57165612,+#_0aef32a42817858a5255dbd55fdb2af9p6@Slc6a5
5.97e-33FFCP PHASE2:Mm9::chr7:57165602..57165612,+#_0aef32a42817858a5255dbd55fdb2af9p6@Slc6a5
1.16e-30FFCP PHASE1:Mm9::chr11:33103589..33103599,-#_b2256bb404330c9480f06a2efdb9623cp3@Tlx3
1.16e-30FFCP PHASE2:Mm9::chr11:33103589..33103599,-#_b2256bb404330c9480f06a2efdb9623cp3@Tlx3
1.83e-30FFCP PHASE2:Mm9::chr11:96146541..96146544,+#_36e0c32d14319cf0da6278611bbfd8b7p@chr11:96146541..96146544, +
1.83e-30FFCP PHASE1:Mm9::chr11:96146541..96146544,+#_36e0c32d14319cf0da6278611bbfd8b7p@chr11:96146541..96146544, +
4.03e-30FFCP PHASE1:Mm9::chr8:33760116..33760119,-#_a12e08684531ac30d8d9eb7d182d67cdp@chr8:33760116..33760119, -
4.03e-30FFCP PHASE2:Mm9::chr8:33760116..33760119,-#_a12e08684531ac30d8d9eb7d182d67cdp@chr8:33760116..33760119, -
5.64e-30FFCP PHASE1:Mm9::chr5:89666281..89666294,+#_45c466ea2f2c6ce9614c78850b598228p@chr5:89666281..89666294, +
5.64e-30FFCP PHASE2:Mm9::chr12:47886256..47886259,-#_45c466ea2f2c6ce9614c78850b598228p@chr12:47886256..47886259, -
5.64e-30FFCP PHASE2:Mm9::chr5:89666281..89666294,+#_45c466ea2f2c6ce9614c78850b598228p@chr5:89666281..89666294, +
5.64e-30FFCP PHASE1:Mm9::chr12:47886256..47886259,-#_45c466ea2f2c6ce9614c78850b598228p@chr12:47886256..47886259, -
5.7e-30FFCP PHASE2:Mm9::chr11:104171794..104171805,+#_5d104da7caa6ab931308ef8d7c15a34cp@chr11:104171794..104171805, +
5.7e-30FFCP PHASE1:Mm9::chr11:104171794..104171805,+#_5d104da7caa6ab931308ef8d7c15a34cp@chr11:104171794..104171805, +
7.89e-30FFCP PHASE2:Mm9::chr4:58340140..58340151,+#_ff96f12e064968968931a104c3c2a14ep@chr4:58340140..58340151, +
7.89e-30FFCP PHASE1:Mm9::chr4:58340140..58340151,+#_ff96f12e064968968931a104c3c2a14ep@chr4:58340140..58340151, +
1.4e-29FFCP PHASE2:Mm9::chr14:94197171..94197177,-#_4e43663075274bab4bf7c905bc721286p@chr14:94197171..94197177, -
1.4e-29FFCP PHASE1:Mm9::chr14:94197171..94197177,-#_4e43663075274bab4bf7c905bc721286p@chr14:94197171..94197177, -
1.4e-29FFCP PHASE2:Mm9::chr4:150371190..150371197,+#_4e43663075274bab4bf7c905bc721286p1@Uts2
1.4e-29FFCP PHASE1:Mm9::chr4:150371190..150371197,+#_4e43663075274bab4bf7c905bc721286p1@Uts2
1.54e-29FFCP PHASE2:Mm9::chr8:84578004..84578010,+#_e7ff1db32b68874b1118a1f3d0b10016p@chr8:84578004..84578010, +
1.54e-29FFCP PHASE1:Mm9::chr8:84578004..84578010,+#_e7ff1db32b68874b1118a1f3d0b10016p@chr8:84578004..84578010, +
1.11e-27FFCP PHASE2:Mm9::chr5:24032551..24032557,-#_3505e865c1f6e7118afb61a0f89bc0afp1@Gbx1
1.11e-27FFCP PHASE1:Mm9::chr5:24032551..24032557,-#_3505e865c1f6e7118afb61a0f89bc0afp1@Gbx1
1.11e-27FFCP PHASE2:Mm9::chr2:70399563..70399583,+#_3505e865c1f6e7118afb61a0f89bc0afp@chr2:70399563..70399583, +
1.11e-27FFCP PHASE1:Mm9::chr2:70399563..70399583,+#_3505e865c1f6e7118afb61a0f89bc0afp@chr2:70399563..70399583, +
2.06e-27FFCP PHASE2:Mm9::chrX:98516253..98516269,+#_3352ffea12b3920d4907480a7ebf8941p@chrX:98516253..98516269, +
2.06e-27FFCP PHASE1:Mm9::chrX:98516253..98516269,+#_3352ffea12b3920d4907480a7ebf8941p@chrX:98516253..98516269, +
3.1e-27FFCP PHASE2:Mm9::chr13:97841582..97841592,+#_8e590551bd2f0e35f0ad0a3dc72d43ccp5@Fam169a
3.1e-27FFCP PHASE1:Mm9::chr13:97841582..97841592,+#_8e590551bd2f0e35f0ad0a3dc72d43ccp5@Fam169a
3.1e-27FFCP PHASE2:Mm9::chr7:144388046..144388053,-#_8e590551bd2f0e35f0ad0a3dc72d43ccp@chr7:144388046..144388053, -
3.1e-27FFCP PHASE1:Mm9::chr7:144388046..144388053,-#_8e590551bd2f0e35f0ad0a3dc72d43ccp@chr7:144388046..144388053, -
4.66e-27FFCP PHASE2:Mm9::chr10:59862497..59862520,+#_5d564c298faab2ea4339387b4c0e67a0p2@Gm17455
4.66e-27FFCP PHASE1:Mm9::chr10:59862497..59862520,+#_5d564c298faab2ea4339387b4c0e67a0p2@Gm17455
6.99e-27FFCP PHASE1:Mm9::chr2:180625404..180625417,+#_742ee434af984cff9e266779e6b4686dp@chr2:180625404..180625417, +
6.99e-27FFCP PHASE2:Mm9::chr2:180625404..180625417,+#_742ee434af984cff9e266779e6b4686dp@chr2:180625404..180625417, +
8.55e-27FFCP PHASE2:Mm9::chr7:57165453..57165473,+#_e540e4e96eb2d329660c8dfe4c4e8c0bp3@Slc6a5
8.55e-27FFCP PHASE1:Mm9::chr7:57165453..57165473,+#_e540e4e96eb2d329660c8dfe4c4e8c0bp3@Slc6a5
2.12e-25FFCP PHASE1:Mm9::chr2:135885511..135885540,+#_5a8ddf7589028aee7d0805d9eee97305p@chr2:135885511..135885540, +
2.12e-25FFCP PHASE2:Mm9::chr2:135885511..135885540,+#_5a8ddf7589028aee7d0805d9eee97305p@chr2:135885511..135885540, +
2.56e-25FFCP PHASE1:Mm9::chr13:97419784..97419792,-#_4fe4b75bfcaba7c7ad2178be385cdd47p@chr13:97419784..97419792, -
2.56e-25FFCP PHASE2:Mm9::chr13:97419784..97419792,-#_4fe4b75bfcaba7c7ad2178be385cdd47p@chr13:97419784..97419792, -
2.56e-25FFCP PHASE2:Mm9::chr2:135883447..135883459,+#_4fe4b75bfcaba7c7ad2178be385cdd47p12@6330527O06Rik
2.56e-25FFCP PHASE1:Mm9::chr2:135883447..135883459,+#_4fe4b75bfcaba7c7ad2178be385cdd47p12@6330527O06Rik
9.4e-25FFCP PHASE2:Mm9::chr15:102355046..102355050,-#_9885b2e2770170030b425ff2d1307a8bp1@Npff
9.4e-25FFCP PHASE1:Mm9::chr7:57165576..57165593,+#_9885b2e2770170030b425ff2d1307a8bp5@Slc6a5
9.4e-25FFCP PHASE1:Mm9::chr15:102355046..102355050,-#_9885b2e2770170030b425ff2d1307a8bp1@Npff
9.4e-25FFCP PHASE2:Mm9::chr7:57165576..57165593,+#_9885b2e2770170030b425ff2d1307a8bp5@Slc6a5
1.13e-24FFCP PHASE2:Mm9::chr5:65522238..65522249,+#_450d49705e29db275c165566b6d749afp9@Klhl5
1.13e-24FFCP PHASE1:Mm9::chr5:65522238..65522249,+#_450d49705e29db275c165566b6d749afp9@Klhl5
1.74e-24FFCP PHASE1:Mm9::chr7:64495660..64495664,-#_c48ae30d7a639f04723e61f336febe38p@chr7:64495660..64495664, -
1.74e-24FFCP PHASE2:Mm9::chr7:64495660..64495664,-#_c48ae30d7a639f04723e61f336febe38p@chr7:64495660..64495664, -
2.28e-24FFCP PHASE1:Mm9::chr2:70053872..70053879,+#_b9e4f79edc1c8792d3ffbca307d5fc49p@chr2:70053872..70053879, +
2.28e-24FFCP PHASE2:Mm9::chr2:70053872..70053879,+#_b9e4f79edc1c8792d3ffbca307d5fc49p@chr2:70053872..70053879, +
2.36e-24FFCP PHASE1:Mm9::chr7:57165629..57165651,+#_954b75df0018c4274234d0099bd2a7bap4@Slc6a5
2.36e-24FFCP PHASE2:Mm9::chr7:57165629..57165651,+#_954b75df0018c4274234d0099bd2a7bap4@Slc6a5
2.99e-24FFCP PHASE2:Mm9::chr7:67121440..67121451,-#_ec29addebf403e503928b4360ade5e40p@chr7:67121440..67121451, -
2.99e-24FFCP PHASE2:Mm9::chr11:33103551..33103561,-#_ec29addebf403e503928b4360ade5e40p4@Tlx3
2.99e-24FFCP PHASE1:Mm9::chr7:67121440..67121451,-#_ec29addebf403e503928b4360ade5e40p@chr7:67121440..67121451, -
2.99e-24FFCP PHASE1:Mm9::chr1:66486342..66486351,+#_ec29addebf403e503928b4360ade5e40p@chr1:66486342..66486351, +
2.99e-24FFCP PHASE2:Mm9::chr1:66486342..66486351,+#_ec29addebf403e503928b4360ade5e40p@chr1:66486342..66486351, +
2.99e-24FFCP PHASE1:Mm9::chr11:33103551..33103561,-#_ec29addebf403e503928b4360ade5e40p4@Tlx3
3.91e-24FFCP PHASE2:Mm9::chr12:85023868..85023879,+#_0a706b3dcca9fca10e36c355b0b207a2p@chr12:85023868..85023879, +
3.91e-24FFCP PHASE1:Mm9::chr12:85023868..85023879,+#_0a706b3dcca9fca10e36c355b0b207a2p@chr12:85023868..85023879, +
4.08e-24FFCP PHASE1:Mm9::chr11:83696202..83696230,+#_1b22b027cec83f043c847ef16250e341p@chr11:83696202..83696230, +
4.08e-24FFCP PHASE2:Mm9::chr11:83696202..83696230,+#_1b22b027cec83f043c847ef16250e341p@chr11:83696202..83696230, +

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