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{{UBERON
{{UBERON
|id=UBERON:0003714
|alt_id=
|name=neural tissue
|namespace=
|def="Portion of tissue which consists of neurons, neuroglia and vasculature. Examples: Neural tissue of brain, neural tissue of peripheral ganglion, neural tissue of nerve[FMA]." [FMA:9642]
|xref=AAO:0000325;;AEO:0000123;;EHDAA2:0003123;;FMA:9642;;GAID:609;;MESH:A.08.561;;ncithesaurus:Nervous_Tissue;;OpenCyc:Mx4rVmfYCsQ_QdeM_bFAeS8NRQ;;SCTID:91728009
|is_a=UBERON:0000073;;UBERON:0000479
|synonym="nerve tissue" EXACT [FMA:9642];;"nervous tissue" EXACT [FMA:9642];;"portion of neural tissue" EXACT [FMA:9642]
|comment=FMA definition includes vasculature
|comment=FMA definition includes vasculature
|alt_id=
|disjoint_from=UBERON:0004755
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Portion of tissue which consists of neurons, neuroglia and vasculature. Examples: Neural tissue of brain, neural tissue of peripheral ganglion, neural tissue of nerve[FMA]." [FMA:9642]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=UBERON:0004755
|has_quality=
|has_quality=
|id=UBERON:0003714
|is_a=UBERON:0000479
|is_obsolete=
|located_in=
|located_in=
|name=neural tissue
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0001016
|part_of=UBERON:0001016
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "One of the four types of tissue in traditional classifications. Cells forming the brain, spinal cord and peripheral nervous system.[AAO]" xsd:string
|subset=
|synonym="nerve tissue" EXACT [FMA:9642];;"nervous tissue" EXACT [FMA:9642];;"portion of neural tissue" EXACT [FMA:9642]
|union_of=
|xref=AAO:0000325;;AEO:0000123;;EHDAA2:0003123;;FMA:9642;;GAID:609;;MESH:A.08.561;;ncithesaurus:Nervous_Tissue;;OpenCyc:Mx4rVmfYCsQ_QdeM_bFAeS8NRQ;;SCTID:91728009
}}
}}

Latest revision as of 17:41, 12 September 2014

Name:neural tissue
Namespace:FANTOM
Definition:"Portion of tissue which consists of neurons, neuroglia and vasculature. Examples: Neural tissue of brain, neural tissue of peripheral ganglion, neural tissue of nerve[FMA]." [FMA:9642]
Xrefs:
links:

AAO:0000325
AEO:0000123
EHDAA2:0003123
FMA:9642
GAID:609
MESH:A.08.561
ncithesaurus:Nervous_Tissue
OpenCyc:Mx4rVmfYCsQ_QdeM_bFAeS8NRQ

SCTID:91728009
Synonyms: "nerve tissue" EXACT [FMA:9642]
"nervous tissue" EXACT [FMA:9642]
"portion of neural tissue" EXACT [FMA:9642]
Comments:FMA definition includes vasculature

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000479(tissue)
disjoint_from:UBERON:0004755(skeletal tissue)
part_of:UBERON:0001016(nervous system)



Children

is a:UBERON:0000045 (ganglion),UBERON:0001810 (nerve plexus)
disjoint from:UBERON:0001013 (adipose tissue),UBERON:0002385 (muscle tissue)
derives from:FF:0102912 (neuroepithelioma cell line sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003714 (neural tissue), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.75e-130FFCP PHASE1:Hg19::chr2:212586166..212586168,-#_f779dacc1bc39f297c035798afc856a8p@chr2:212586166..212586168, -
1.75e-130FFCP PHASE2:Hg19::chr2:212586166..212586168,-#_f779dacc1bc39f297c035798afc856a8p@chr2:212586166..212586168, -
1.55e-98FFCP PHASE2:Hg19::chr12:57628762..57628773,-#_33bae9ebb65e06dd32204f9d07c666edp@chr12:57628762..57628773, -
1.55e-98FFCP PHASE1:Hg19::chr1:21339635..21339636,-#_33bae9ebb65e06dd32204f9d07c666edp@chr1:21339635..21339636, -
1.55e-98FFCP PHASE2:Hg19::chr1:21339635..21339636,-#_33bae9ebb65e06dd32204f9d07c666edp@chr1:21339635..21339636, -
1.55e-98FFCP PHASE1:Hg19::chr12:57628762..57628773,-#_33bae9ebb65e06dd32204f9d07c666edp@chr12:57628762..57628773, -
5.22e-79FFCP PHASE1:Hg19::chr8:6081804..6081807,-#_dee53416bc5436e6f221e2232f8b2f4ep@chr8:6081804..6081807, -
5.22e-79FFCP PHASE2:Hg19::chr8:6081804..6081807,-#_dee53416bc5436e6f221e2232f8b2f4ep@chr8:6081804..6081807, -
2.03e-66FFCP PHASE1:Hg19::chr8:27057116..27057118,+#_c6b72cfb226974d668817d576171e1fdp@chr8:27057116..27057118, +
2.03e-66FFCP PHASE2:Hg19::chr8:27057116..27057118,+#_c6b72cfb226974d668817d576171e1fdp@chr8:27057116..27057118, +
2.84e-66FFCP PHASE1:Hg19::chr11:16629621..16629629,-#_d1c0458216e37842ef4be6df0ef9a4cdp30@SOX6
2.84e-66FFCP PHASE2:Hg19::chr11:16629621..16629629,-#_d1c0458216e37842ef4be6df0ef9a4cdp30@SOX6
7.73e-66FFCP PHASE2:Hg19::chr2:29703653..29703657,-#_0e13d118c9c2d633aa8057d83f337821p@chr2:29703653..29703657, -
7.73e-66FFCP PHASE1:Hg19::chr2:29703653..29703657,-#_0e13d118c9c2d633aa8057d83f337821p@chr2:29703653..29703657, -
2.0e-56FFCP PHASE2:Hg19::chr11:126010526..126010554,-#_521b9313f370a70b37dd4e806affe7c9p@chr11:126010526..126010554, -
2.0e-56FFCP PHASE1:Hg19::chr11:126010526..126010554,-#_521b9313f370a70b37dd4e806affe7c9p@chr11:126010526..126010554, -
2.74e-50FFCP PHASE1:Hg19::chr2:60133192..60133194,-#_6bc149423710c074798d272d1b1e2e53p@chr2:60133192..60133194, -
2.74e-50FFCP PHASE1:Hg19::chr18:25161980..25161984,-#_6bc149423710c074798d272d1b1e2e53p@chr18:25161980..25161984, -
2.74e-50FFCP PHASE1:Hg19::chr5:149250331..149250335,-#_6bc149423710c074798d272d1b1e2e53p@chr5:149250331..149250335, -
2.74e-50FFCP PHASE2:Hg19::chr2:60133192..60133194,-#_6bc149423710c074798d272d1b1e2e53p@chr2:60133192..60133194, -
2.74e-50FFCP PHASE2:Hg19::chr14:105807545..105807554,+#_6bc149423710c074798d272d1b1e2e53p@chr14:105807545..105807554, +
2.74e-50FFCP PHASE1:Hg19::chr5:151258901..151258902,+#_6bc149423710c074798d272d1b1e2e53p@chr5:151258901..151258902, +
2.74e-50FFCP PHASE2:Hg19::chr5:149250331..149250335,-#_6bc149423710c074798d272d1b1e2e53p@chr5:149250331..149250335, -
2.74e-50FFCP PHASE2:Hg19::chr5:151258901..151258902,+#_6bc149423710c074798d272d1b1e2e53p@chr5:151258901..151258902, +
2.74e-50FFCP PHASE1:Hg19::chr8:37824442..37824447,-#_6bc149423710c074798d272d1b1e2e53p9@ADRB3
2.74e-50FFCP PHASE2:Hg19::chr18:74702556..74702558,-#_6bc149423710c074798d272d1b1e2e53p@chr18:74702556..74702558, -
2.74e-50FFCP PHASE2:Hg19::chr18:25161980..25161984,-#_6bc149423710c074798d272d1b1e2e53p@chr18:25161980..25161984, -
2.74e-50FFCP PHASE2:Hg19::chr7:15056365..15056368,-#_6bc149423710c074798d272d1b1e2e53p@chr7:15056365..15056368, -
2.74e-50FFCP PHASE2:Hg19::chr4:127394496..127394500,-#_6bc149423710c074798d272d1b1e2e53p@chr4:127394496..127394500, -
2.74e-50FFCP PHASE1:Hg19::chr4:127394496..127394500,-#_6bc149423710c074798d272d1b1e2e53p@chr4:127394496..127394500, -
2.74e-50FFCP PHASE1:Hg19::chr7:15056365..15056368,-#_6bc149423710c074798d272d1b1e2e53p@chr7:15056365..15056368, -
2.74e-50FFCP PHASE2:Hg19::chr1:62928606..62928608,+#_6bc149423710c074798d272d1b1e2e53p@chr1:62928606..62928608, +
2.74e-50FFCP PHASE1:Hg19::chr1:62928606..62928608,+#_6bc149423710c074798d272d1b1e2e53p@chr1:62928606..62928608, +
2.74e-50FFCP PHASE1:Hg19::chr2:188432107..188432111,+#_6bc149423710c074798d272d1b1e2e53p@chr2:188432107..188432111, +
2.74e-50FFCP PHASE2:Hg19::chr8:37824442..37824447,-#_6bc149423710c074798d272d1b1e2e53p9@ADRB3
2.74e-50FFCP PHASE1:Hg19::chr1:22696471..22696505,-#_6bc149423710c074798d272d1b1e2e53p@chr1:22696471..22696505, -
2.74e-50FFCP PHASE2:Hg19::chr8:12808791..12808798,+#_6bc149423710c074798d272d1b1e2e53p28@KIAA1456
2.74e-50FFCP PHASE2:Hg19::chr2:188432107..188432111,+#_6bc149423710c074798d272d1b1e2e53p@chr2:188432107..188432111, +
2.74e-50FFCP PHASE1:Hg19::chr8:12808791..12808798,+#_6bc149423710c074798d272d1b1e2e53p28@KIAA1456
2.74e-50FFCP PHASE2:Hg19::chr1:22696471..22696505,-#_6bc149423710c074798d272d1b1e2e53p@chr1:22696471..22696505, -
2.74e-50FFCP PHASE1:Hg19::chr14:105807545..105807554,+#_6bc149423710c074798d272d1b1e2e53p@chr14:105807545..105807554, +
2.74e-50FFCP PHASE1:Hg19::chr18:74702556..74702558,-#_6bc149423710c074798d272d1b1e2e53p@chr18:74702556..74702558, -
4.52e-50FFCP PHASE2:Hg19::chr3:181328472..181328478,+#_9b72837bdb72ff9efe1143abbdbacba2p25@SOX2-OT
4.52e-50FFCP PHASE2:Hg19::chr10:62149979..62149980,-#_9b72837bdb72ff9efe1143abbdbacba2p59@ANK3
4.52e-50FFCP PHASE2:Hg19::chr3:13992334..13992338,-#_9b72837bdb72ff9efe1143abbdbacba2p@chr3:13992334..13992338, -
4.52e-50FFCP PHASE1:Hg19::chr3:193615743..193615750,-#_9b72837bdb72ff9efe1143abbdbacba2p@chr3:193615743..193615750, -
4.52e-50FFCP PHASE1:Hg19::chr8:130597061..130597068,+#_9b72837bdb72ff9efe1143abbdbacba2p@chr8:130597061..130597068, +
4.52e-50FFCP PHASE2:Hg19::chr12:72875355..72875358,+#_9b72837bdb72ff9efe1143abbdbacba2p@chr12:72875355..72875358, +
4.52e-50FFCP PHASE1:Hg19::chr14:88034381..88034386,-#_9b72837bdb72ff9efe1143abbdbacba2p@chr14:88034381..88034386, -
4.52e-50FFCP PHASE1:Hg19::chr9:19514976..19514978,-#_9b72837bdb72ff9efe1143abbdbacba2p@chr9:19514976..19514978, -
4.52e-50FFCP PHASE1:Hg19::chr6:168558338..168558388,-#_9b72837bdb72ff9efe1143abbdbacba2p@chr6:168558338..168558388, -
4.52e-50FFCP PHASE2:Hg19::chr1:1413227..1413230,+#_9b72837bdb72ff9efe1143abbdbacba2p2@ATAD3B
4.52e-50FFCP PHASE1:Hg19::chr1:1361494..1361497,+#_9b72837bdb72ff9efe1143abbdbacba2p7@TMEM88B
4.52e-50FFCP PHASE1:Hg19::chr10:62149979..62149980,-#_9b72837bdb72ff9efe1143abbdbacba2p59@ANK3
4.52e-50FFCP PHASE2:Hg19::chr18:61506836..61506840,+#_9b72837bdb72ff9efe1143abbdbacba2p@chr18:61506836..61506840, +
4.52e-50FFCP PHASE1:Hg19::chr8:37824071..37824078,-#_9b72837bdb72ff9efe1143abbdbacba2p5@ADRB3
4.52e-50FFCP PHASE2:Hg19::chr12:69678255..69678259,+#_9b72837bdb72ff9efe1143abbdbacba2p1@ENST00000548895
4.52e-50FFCP PHASE2:Hg19::chr5:33229308..33229311,-#_9b72837bdb72ff9efe1143abbdbacba2p@chr5:33229308..33229311, -
4.52e-50FFCP PHASE1:Hg19::chr5:24554148..24554153,+#_9b72837bdb72ff9efe1143abbdbacba2p1@ENST00000510391
4.52e-50FFCP PHASE2:Hg19::chr16:70563415..70563420,+#_9b72837bdb72ff9efe1143abbdbacba2p4@SNORD111B
4.52e-50FFCP PHASE2:Hg19::chr7:73444812..73444816,+#_9b72837bdb72ff9efe1143abbdbacba2p@chr7:73444812..73444816, +
4.52e-50FFCP PHASE1:Hg19::chr1:86911063..86911068,+#_9b72837bdb72ff9efe1143abbdbacba2p@chr1:86911063..86911068, +
4.52e-50FFCP PHASE2:Hg19::chr3:27750995..27750997,-#_9b72837bdb72ff9efe1143abbdbacba2p@chr3:27750995..27750997, -
4.52e-50FFCP PHASE2:Hg19::chr1:44991346..44991355,+#_9b72837bdb72ff9efe1143abbdbacba2p@chr1:44991346..44991355, +
4.52e-50FFCP PHASE2:Hg19::chr1:66713214..66713221,+#_9b72837bdb72ff9efe1143abbdbacba2p@chr1:66713214..66713221, +
4.52e-50FFCP PHASE1:Hg19::chr1:44991346..44991355,+#_9b72837bdb72ff9efe1143abbdbacba2p@chr1:44991346..44991355, +
4.52e-50FFCP PHASE1:Hg19::chr2:171939999..171940009,-#_9b72837bdb72ff9efe1143abbdbacba2p@chr2:171939999..171940009, -
4.52e-50FFCP PHASE1:Hg19::chr16:66170755..66170759,-#_9b72837bdb72ff9efe1143abbdbacba2p@chr16:66170755..66170759, -
4.52e-50FFCP PHASE1:Hg19::chr2:242742205..242742253,+#_9b72837bdb72ff9efe1143abbdbacba2p@chr2:242742205..242742253, +
4.52e-50FFCP PHASE1:Hg19::chr1:203036812..203036840,+#_9b72837bdb72ff9efe1143abbdbacba2p@chr1:203036812..203036840, +
4.52e-50FFCP PHASE2:Hg19::chr7:91509972..91509984,-#_9b72837bdb72ff9efe1143abbdbacba2p3@MTERF
4.52e-50FFCP PHASE1:Hg19::chr7:88535666..88535671,+#_9b72837bdb72ff9efe1143abbdbacba2p@chr7:88535666..88535671, +
4.52e-50FFCP PHASE2:Hg19::chr12:78359873..78359882,+#_9b72837bdb72ff9efe1143abbdbacba2p41@NAV3
4.52e-50FFCP PHASE1:Hg19::chr5:126962527..126962529,-#_9b72837bdb72ff9efe1143abbdbacba2p@chr5:126962527..126962529, -
4.52e-50FFCP PHASE1:Hg19::chr1:66713214..66713221,+#_9b72837bdb72ff9efe1143abbdbacba2p@chr1:66713214..66713221, +
4.52e-50FFCP PHASE2:Hg19::chr3:193615743..193615750,-#_9b72837bdb72ff9efe1143abbdbacba2p@chr3:193615743..193615750, -
4.52e-50FFCP PHASE2:Hg19::chr14:68527802..68527806,+#_9b72837bdb72ff9efe1143abbdbacba2p@chr14:68527802..68527806, +
4.52e-50FFCP PHASE1:Hg19::chr2:97626726..97626741,+#_9b72837bdb72ff9efe1143abbdbacba2p@chr2:97626726..97626741, +
4.52e-50FFCP PHASE2:Hg19::chr1:1361494..1361497,+#_9b72837bdb72ff9efe1143abbdbacba2p7@TMEM88B
4.52e-50FFCP PHASE1:Hg19::chr16:51174920..51174928,-#_9b72837bdb72ff9efe1143abbdbacba2p@chr16:51174920..51174928, -
4.52e-50FFCP PHASE1:Hg19::chr14:37227792..37227796,-#_9b72837bdb72ff9efe1143abbdbacba2p@chr14:37227792..37227796, -
4.52e-50FFCP PHASE1:Hg19::chr9:79519652..79519664,-#_9b72837bdb72ff9efe1143abbdbacba2p@chr9:79519652..79519664, -
4.52e-50FFCP PHASE2:Hg19::chr8:37824071..37824078,-#_9b72837bdb72ff9efe1143abbdbacba2p5@ADRB3
4.52e-50FFCP PHASE2:Hg19::chr17:47107522..47107524,+#_9b72837bdb72ff9efe1143abbdbacba2p@chr17:47107522..47107524, +
4.52e-50FFCP PHASE2:Hg19::chr9:19514976..19514978,-#_9b72837bdb72ff9efe1143abbdbacba2p@chr9:19514976..19514978, -
4.52e-50FFCP PHASE2:Hg19::chr6:168558338..168558388,-#_9b72837bdb72ff9efe1143abbdbacba2p@chr6:168558338..168558388, -
4.52e-50FFCP PHASE2:Hg19::chr5:24554148..24554153,+#_9b72837bdb72ff9efe1143abbdbacba2p1@ENST00000510391
4.52e-50FFCP PHASE2:Hg19::chr1:86911063..86911068,+#_9b72837bdb72ff9efe1143abbdbacba2p@chr1:86911063..86911068, +
4.52e-50FFCP PHASE1:Hg19::chr1:154942133..154942148,-#_9b72837bdb72ff9efe1143abbdbacba2p@chr1:154942133..154942148, -
4.52e-50FFCP PHASE1:Hg19::chr16:89970522..89970530,+#_9b72837bdb72ff9efe1143abbdbacba2p9@TCF25
4.52e-50FFCP PHASE2:Hg19::chr2:171939999..171940009,-#_9b72837bdb72ff9efe1143abbdbacba2p@chr2:171939999..171940009, -
4.52e-50FFCP PHASE2:Hg19::chr2:242742205..242742253,+#_9b72837bdb72ff9efe1143abbdbacba2p@chr2:242742205..242742253, +
4.52e-50FFCP PHASE2:Hg19::chr1:203036812..203036840,+#_9b72837bdb72ff9efe1143abbdbacba2p@chr1:203036812..203036840, +
4.52e-50FFCP PHASE1:Hg19::chr2:240176859..240176904,-#_9b72837bdb72ff9efe1143abbdbacba2p@chr2:240176859..240176904, -
4.52e-50FFCP PHASE1:Hg19::chr18:45498690..45498695,-#_9b72837bdb72ff9efe1143abbdbacba2p@chr18:45498690..45498695, -
4.52e-50FFCP PHASE2:Hg19::chr10:118927879..118927891,+#_9b72837bdb72ff9efe1143abbdbacba2p@chr10:118927879..118927891, +
4.52e-50FFCP PHASE2:Hg19::chr7:88535666..88535671,+#_9b72837bdb72ff9efe1143abbdbacba2p@chr7:88535666..88535671, +
4.52e-50FFCP PHASE2:Hg19::chr16:55740953..55740956,+#_9b72837bdb72ff9efe1143abbdbacba2p@chr16:55740953..55740956, +
4.52e-50FFCP PHASE2:Hg19::chr11:2435409..2435443,-#_9b72837bdb72ff9efe1143abbdbacba2p@chr11:2435409..2435443, -
4.52e-50FFCP PHASE2:Hg19::chr10:37679189..37679193,+#_9b72837bdb72ff9efe1143abbdbacba2p@chr10:37679189..37679193, +










Property "Property value" (as page type) with input value "UBPROP:0000001 "One of the four types of tissue in traditional classifications. Cells forming the brain, spinal cord and peripheral nervous system.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0003714&oldid=3277581"