FF:10159-103A6: Difference between revisions

Latest revision as of 12:23, 3 June 2020

Name:	spinal cord, adult, donor10252
Species:	Human (Homo sapiens)
Library ID:	CNhs12227
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	spinal cord
dev stage	NA
sex	female
age	76
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	NA
collaboration	Peter Heutink
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005672

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12227		CAGE		DRX008728		DRR009600

Accession ID Hg19

Library id		BAM		CTSS
CNhs12227		DRZ001025		DRZ002410

Accession ID Hg38

Library id		BAM		CTSS
CNhs12227		DRZ012375		DRZ013760

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

HumanCAGEScan Download raw sequence, BAM & CTSS

Library id		3prime-FASTQ		5prime-FASTQ		BAM		CTSS
NCig10030		download		download		download		download

RNA-Seq Accession numbers

Method		Sample accession id
sRNA-Seq		SAMD00005672

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
SRhi10003.GGCTAC		sRNA-Seq		DRX037339		DRR041705

Accession ID Hg19

Library id		BAM		CTSS
SRhi10003.GGCTAC		DRZ007347

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0.113
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.739
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.249
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0.113
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0.203
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.113
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.12
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.00742
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0.713
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.0431
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.276
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.395
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.277
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.123
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.233
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.762
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.352
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0.113
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.113
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0.203
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.113
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0.203
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.113
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0614
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0.599
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.113
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0.158
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.505
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.446
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.444
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0.277
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.528
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.158
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0.203
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0.113
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0.63
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.148
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0.277
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0.113
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12227

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0754
MA0003.1	MA0003.1	0.22
MA0004.1	MA0004.1	0.461
MA0006.1	MA0006.1	0.399
MA0007.1	MA0007.1	0.507
MA0009.1	MA0009.1	0.299
MA0014.1	MA0014.1	0.787
MA0017.1	MA0017.1	0.00857
MA0018.2	MA0018.2	0.332
MA0019.1	MA0019.1	0.616
MA0024.1	MA0024.1	0.64
MA0025.1	MA0025.1	0.676
MA0027.1	MA0027.1	0.942
MA0028.1	MA0028.1	0.11
MA0029.1	MA0029.1	0.0276
MA0030.1	MA0030.1	0.0214
MA0031.1	MA0031.1	0.00712
MA0035.2	MA0035.2	0.00611
MA0038.1	MA0038.1	0.125
MA0039.2	MA0039.2	0.359
MA0040.1	MA0040.1	0.383
MA0041.1	MA0041.1	0.549
MA0042.1	MA0042.1	0.774
MA0043.1	MA0043.1	0.887
MA0046.1	MA0046.1	0.00343
MA0047.2	MA0047.2	0.789
MA0048.1	MA0048.1	0.126
MA0050.1	MA0050.1	0.656
MA0051.1	MA0051.1	0.592
MA0052.1	MA0052.1	0.556
MA0055.1	MA0055.1	0.00181
MA0057.1	MA0057.1	0.751
MA0058.1	MA0058.1	0.732
MA0059.1	MA0059.1	0.133
MA0060.1	MA0060.1	0.117
MA0061.1	MA0061.1	0.00604
MA0062.2	MA0062.2	0.0238
MA0065.2	MA0065.2	9.20012e-4
MA0066.1	MA0066.1	0.00583
MA0067.1	MA0067.1	0.581
MA0068.1	MA0068.1	0.454
MA0069.1	MA0069.1	0.996
MA0070.1	MA0070.1	0.238
MA0071.1	MA0071.1	0.0255
MA0072.1	MA0072.1	0.752
MA0073.1	MA0073.1	0.68
MA0074.1	MA0074.1	0.135
MA0076.1	MA0076.1	0.267
MA0077.1	MA0077.1	0.00665
MA0078.1	MA0078.1	0.969
MA0079.2	MA0079.2	0.935
MA0080.2	MA0080.2	0.00674
MA0081.1	MA0081.1	0.0893
MA0083.1	MA0083.1	0.153
MA0084.1	MA0084.1	0.222
MA0087.1	MA0087.1	0.0982
MA0088.1	MA0088.1	0.332
MA0090.1	MA0090.1	0.298
MA0091.1	MA0091.1	0.439
MA0092.1	MA0092.1	0.232
MA0093.1	MA0093.1	0.585
MA0099.2	MA0099.2	8.79666e-18
MA0100.1	MA0100.1	0.701
MA0101.1	MA0101.1	0.0071
MA0102.2	MA0102.2	0.99
MA0103.1	MA0103.1	0.00666
MA0104.2	MA0104.2	0.46
MA0105.1	MA0105.1	7.56673e-5
MA0106.1	MA0106.1	0.0204
MA0107.1	MA0107.1	0.005
MA0108.2	MA0108.2	0.862
MA0111.1	MA0111.1	0.735
MA0112.2	MA0112.2	6.34229e-4
MA0113.1	MA0113.1	0.806
MA0114.1	MA0114.1	0.0135
MA0115.1	MA0115.1	0.873
MA0116.1	MA0116.1	0.00281
MA0117.1	MA0117.1	0.984
MA0119.1	MA0119.1	0.149
MA0122.1	MA0122.1	0.419
MA0124.1	MA0124.1	0.202
MA0125.1	MA0125.1	0.147
MA0131.1	MA0131.1	0.933
MA0135.1	MA0135.1	0.027
MA0136.1	MA0136.1	4.36573e-4
MA0137.2	MA0137.2	0.00305
MA0138.2	MA0138.2	0.7
MA0139.1	MA0139.1	0.576
MA0140.1	MA0140.1	0.0203
MA0141.1	MA0141.1	0.00109
MA0142.1	MA0142.1	0.235
MA0143.1	MA0143.1	0.0145
MA0144.1	MA0144.1	0.815
MA0145.1	MA0145.1	0.474
MA0146.1	MA0146.1	0.0384
MA0147.1	MA0147.1	0.204
MA0148.1	MA0148.1	0.543
MA0149.1	MA0149.1	0.0259
MA0150.1	MA0150.1	0.00158
MA0152.1	MA0152.1	0.418
MA0153.1	MA0153.1	0.637
MA0154.1	MA0154.1	0.0455
MA0155.1	MA0155.1	0.599
MA0156.1	MA0156.1	0.00329
MA0157.1	MA0157.1	0.17
MA0159.1	MA0159.1	0.0109
MA0160.1	MA0160.1	0.0325
MA0162.1	MA0162.1	0.12
MA0163.1	MA0163.1	5.67224e-8
MA0164.1	MA0164.1	0.396
MA0258.1	MA0258.1	0.00883
MA0259.1	MA0259.1	0.708

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12227

Novel motif	Logo	P-value
1	1	0.0709
10	10	0.0663
100	100	0.348
101	101	0.471
102	102	0.842
103	103	0.0297
104	104	0.0667
105	105	0.67
106	106	0.0191
107	107	0.131
108	108	0.547
109	109	0.001
11	11	0.0136
110	110	0.0761
111	111	0.105
112	112	0.333
113	113	0.23
114	114	0.0913
115	115	0.721
116	116	0.0729
117	117	0.0153
118	118	0.124
119	119	0.158
12	12	0.563
120	120	0.228
121	121	0.893
122	122	0.782
123	123	0.856
124	124	0.317
125	125	0.566
126	126	0.187
127	127	0.451
128	128	0.164
129	129	0.43
13	13	0.0102
130	130	0.556
131	131	0.00291
132	132	0.523
133	133	0.0786
134	134	0.436
135	135	0.0592
136	136	0.00116
137	137	0.823
138	138	0.906
139	139	0.14
14	14	0.96
140	140	0.393
141	141	0.426
142	142	0.523
143	143	0.0509
144	144	0.969
145	145	0.354
146	146	0.682
147	147	0.675
148	148	0.35
149	149	0.0897
15	15	0.0525
150	150	0.0859
151	151	0.665
152	152	0.0658
153	153	0.959
154	154	0.505
155	155	0.621
156	156	0.164
157	157	0.364
158	158	0.0681
159	159	0.00573
16	16	0.0317
160	160	0.156
161	161	0.164
162	162	0.969
163	163	0.821
164	164	0.0136
165	165	0.481
166	166	0.934
167	167	0.964
168	168	0.924
169	169	0.0214
17	17	0.0497
18	18	0.0286
19	19	0.377
2	2	0.961
20	20	0.23
21	21	0.0282
22	22	0.34
23	23	0.565
24	24	0.129
25	25	0.796
26	26	0.00395
27	27	0.626
28	28	0.872
29	29	0.00447
3	3	0.0623
30	30	0.911
31	31	0.856
32	32	0.00604
33	33	0.0783
34	34	0.867
35	35	0.485
36	36	0.316
37	37	0.029
38	38	0.561
39	39	0.284
4	4	0.855
40	40	0.109
41	41	0.316
42	42	0.313
43	43	0.185
44	44	0.0212
45	45	0.763
46	46	0.0285
47	47	0.0683
48	48	0.0551
49	49	0.353
5	5	0.995
50	50	0.653
51	51	0.285
52	52	0.731
53	53	0.557
54	54	0.548
55	55	0.923
56	56	0.601
57	57	0.289
58	58	0.467
59	59	0.0661
6	6	0.971
60	60	0.174
61	61	0.127
62	62	0.251
63	63	0.285
64	64	0.121
65	65	0.309
66	66	0.23
67	67	0.532
68	68	0.44
69	69	0.344
7	7	0.201
70	70	0.0125
71	71	0.00915
72	72	0.382
73	73	0.0365
74	74	0.594
75	75	0.0201
76	76	0.182
77	77	0.112
78	78	0.0039
79	79	0.5
8	8	0.0274
80	80	0.929
81	81	0.629
82	82	0.571
83	83	0.245
84	84	0.421
85	85	0.473
86	86	0.183
87	87	1.02689e-4
88	88	0.677
89	89	0.161
9	9	0.63
90	90	0.212
91	91	0.452
92	92	0.65
93	93	0.988
94	94	0.141
95	95	0.00606
96	96	0.543
97	97	0.913
98	98	0.208
99	99	0.37

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12227

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000002 in vivo cell sample
FF:0010159 human spinal cord - adult sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0002240 (spinal cord)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0000489 (cavitated compound organ)
0005174 (dorsal region element)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0001137 (dorsum)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010159 (human spinal cord - adult sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0006241 (future spinal cord)
UBERON:0003057 (chordal neural plate)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
-|id=FF:10159-103A6
+|DRA_sample_Accession=CAGE@SAMD00005672
-|name=spinal cord, adult, donor10252
+|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005672
-|sample_id=10159
+|HumanCAGEScanFiles=NCig10030;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/spinal%2520cord%252c%2520adult%252c%2520donor10252.NCig10030.10159-103A6.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/spinal%2520cord%252c%2520adult%252c%2520donor10252.NCig10030.10159-103A6.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/spinal%2520cord%252c%2520adult%252c%2520donor10252.NCig10030.10159-103A6.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/spinal%2520cord%252c%2520adult%252c%2520donor10252.NCig10030.10159-103A6.hg19.GCTATA.pairs.bed.gz
-|rna_tube_id=103A6
+|accession_numbers=CAGE;DRX008728;DRR009600;DRZ001025;DRZ002410;DRZ012375;DRZ013760
-|rna_box=103
+|accession_numbers_RNASeq=sRNA-Seq;DRX037339;DRR041705;DRZ007347
-|rna_position=A6
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0002240,UBERON:0000479,UBERON:0004121,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0000489,UBERON:0005174,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001137
-|sample_cell_lot=NA
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003
-|sample_cell_catalog=NA
-|sample_company=
-|rna_lot_number=
-|rna_catalog_number=
-|sample_species=Human (Homo sapiens)
-|sample_strain=
-|sample_dev_stage=
-|sample_tissue=spinal cord
-|sample_donor(cell lot)=donor: 10252
-|sample_sex=female
-|sample_age=76
-|sample_ethnicity=
-|rna_rin=
-|rna_od260/230=2.24
-|rna_od260/280=2.04
-|sample_cell_type=CELL MIXTURE - tissue sample
-|sample_cell_line=
-|sample_collaboration=Peter Heutink
-|sample_experimental_condition=
-|sample_disease=
-|rna_sample_type=total RNA
-|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
-|rna_weight_ug=49.2225
-|rna_concentration=0.6563
-|sample_note=
-|profile_hcage=CNhs12227,LSID852,release009,COMPLETED
-|profile_cagescan=NCig10030,,,
-|profile_srnaseq=SRhi10003,,,
-|profile_rnaseq=,,,
-|ancestors_in_cell_lineage_facet=
-|ancestors_in_anatomy_facet=UBERON:0000025,UBERON:0000061,UBERON:0000062,UBERON:0000073,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000477,UBERON:0000479,UBERON:0000480,UBERON:0000489,UBERON:0000922,UBERON:0000923,UBERON:0000924,UBERON:0001016,UBERON:0001017,UBERON:0001049,UBERON:0001062,UBERON:0001137,UBERON:0002050,UBERON:0002100,UBERON:0002240,UBERON:0002346,UBERON:0002532,UBERON:0003057,UBERON:0003075,UBERON:0003076,UBERON:0003103,UBERON:0004121,UBERON:0005068,UBERON:0005174,UBERON:0005177,UBERON:0005423,UBERON:0005743,UBERON:0006598,UBERON:0007023,UBERON:0007135,UBERON:0007284
 |ancestors_in_disease_facet=
-|sample_description=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010159
+|comment=
+|created_by=
+|creation_date=
+|data_phase=2
+|datafreeze_phase=2
+|def=
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+|ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0006241,UBERON:0003057,UBERON:0010316
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 66: / Line 44: @@
 |fonse_treatment=
 |fonse_treatment_closure=
-|top_motifs=
+|has_quality=
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+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/spinal%2520cord%252c%2520adult%252c%2520donor10252.CNhs12227.10159-103A6.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/spinal%2520cord%252c%2520adult%252c%2520donor10252.CNhs12227.10159-103A6.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/spinal%2520cord%252c%2520adult%252c%2520donor10252.CNhs12227.10159-103A6.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/spinal%2520cord%252c%2520adult%252c%2520donor10252.CNhs12227.10159-103A6.hg38.nobarcode.ctss.bed.gz
+|id=FF:10159-103A6
+|is_a=EFO:0002091;;FF:0000002;;FF:0010159
+|is_obsolete=
+|library_id=CNhs12227
+|library_id_phase_based=2:CNhs12227
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10159
+|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10003.GGCTAC.10159
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10159
+|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10003.GGCTAC.10159
+|name=spinal cord, adult, donor10252
+|namespace=FANTOM5
+|part_of=
+|profile_cagescan=NCig10030,,,
+|profile_hcage=CNhs12227,LSID852,release009,COMPLETED
+|profile_rnaseq=
+|profile_srnaseq=SRhi10003,,,
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+|rna_concentration=0.6563
+|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
+|rna_lot_number=
+|rna_od260/230=2.24
+|rna_od260/280=2.04
+|rna_position=A6
+|rna_rin=
+|rna_sample_type=total RNA
+|rna_tube_id=103A6
+|rna_weight_ug=49.2225
+|rnaseq_library_id=SRhi10003.GGCTAC
+|sample_age=76
+|sample_category=tissues
+|sample_cell_catalog=NA
+|sample_cell_line=
+|sample_cell_lot=NA
+|sample_cell_type=CELL MIXTURE - tissue sample
+|sample_collaboration=Peter Heutink
+|sample_company=
+|sample_description=
+|sample_dev_stage=
+|sample_disease=
+|sample_donor(cell lot)=donor: 10252
+|sample_ethnicity=
+|sample_experimental_condition=
+|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.41689137030206e-255!GO:0005737;cytoplasm;8.57476100990326e-139!GO:0043226;organelle;4.15450057197407e-119!GO:0043229;intracellular organelle;1.08019498451558e-118!GO:0043227;membrane-bound organelle;1.30553545784126e-114!GO:0043231;intracellular membrane-bound organelle;2.15305373877608e-114!GO:0044444;cytoplasmic part;3.93362926707431e-88!GO:0005515;protein binding;1.25042206905201e-72!GO:0044422;organelle part;1.02867211148721e-64!GO:0044446;intracellular organelle part;1.30629615421688e-63!GO:0032991;macromolecular complex;5.66649979983553e-53!GO:0044238;primary metabolic process;3.65570719477586e-43!GO:0016043;cellular component organization and biogenesis;5.51059080132326e-43!GO:0044237;cellular metabolic process;1.46173038019585e-41!GO:0003723;RNA binding;1.86125938382578e-41!GO:0005634;nucleus;4.19802650807585e-41!GO:0043170;macromolecule metabolic process;5.20946207799855e-40!GO:0044428;nuclear part;1.96987987869319e-38!GO:0033036;macromolecule localization;2.18865404883924e-38!GO:0030529;ribonucleoprotein complex;2.7759667961495e-38!GO:0043233;organelle lumen;1.4422928468621e-36!GO:0031974;membrane-enclosed lumen;1.4422928468621e-36!GO:0015031;protein transport;6.66835736502174e-36!GO:0008104;protein localization;1.13678766983972e-34!GO:0045184;establishment of protein localization;5.2200548052893e-34!GO:0005739;mitochondrion;1.74032660350674e-32!GO:0031090;organelle membrane;3.96721299807604e-32!GO:0016071;mRNA metabolic process;1.32775703976172e-29!GO:0046907;intracellular transport;1.37668124228088e-29!GO:0043234;protein complex;2.22574567726643e-28!GO:0006396;RNA processing;9.27324291173362e-27!GO:0019538;protein metabolic process;7.65464128504555e-26!GO:0043283;biopolymer metabolic process;9.19523267138717e-26!GO:0008380;RNA splicing;9.19523267138717e-26!GO:0031975;envelope;1.63185352685049e-24!GO:0031967;organelle envelope;2.07260972136549e-24!GO:0006397;mRNA processing;2.86521935749319e-24!GO:0031981;nuclear lumen;8.92990758636235e-24!GO:0005829;cytosol;2.53403190175911e-23!GO:0051649;establishment of cellular localization;3.58198391759074e-23!GO:0006886;intracellular protein transport;4.15457706534161e-23!GO:0044429;mitochondrial part;4.23869711739837e-23!GO:0044260;cellular macromolecule metabolic process;5.96121174900135e-23!GO:0051641;cellular localization;6.58229307953849e-23!GO:0010467;gene expression;6.62188079982411e-23!GO:0044267;cellular protein metabolic process;1.02682311583409e-21!GO:0016192;vesicle-mediated transport;1.95475897172668e-20!GO:0006996;organelle organization and biogenesis;2.26391245752339e-19!GO:0006412;translation;4.65940420701304e-19!GO:0065003;macromolecular complex assembly;1.80536466266401e-18!GO:0005681;spliceosome;1.46195276642265e-17!GO:0005840;ribosome;1.96656701335374e-17!GO:0000166;nucleotide binding;4.82111701190983e-17!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;7.74795024946655e-17!GO:0005740;mitochondrial envelope;1.26236021893836e-16!GO:0005794;Golgi apparatus;1.2994567632361e-16!GO:0009058;biosynthetic process;1.50673013966913e-16!GO:0005654;nucleoplasm;3.16214750718535e-16!GO:0022607;cellular component assembly;3.16214750718535e-16!GO:0031966;mitochondrial membrane;4.54507410414499e-16!GO:0006119;oxidative phosphorylation;7.80730567497413e-16!GO:0009059;macromolecule biosynthetic process;1.49857841523151e-15!GO:0019866;organelle inner membrane;5.78078334079834e-15!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.11262573702214e-14!GO:0016817;hydrolase activity, acting on acid anhydrides;1.38702710517762e-14!GO:0016462;pyrophosphatase activity;1.40262452211199e-14!GO:0048770;pigment granule;1.40262452211199e-14!GO:0042470;melanosome;1.40262452211199e-14!GO:0008134;transcription factor binding;2.43588529650992e-14!GO:0044451;nucleoplasm part;2.83692667901587e-14!GO:0005743;mitochondrial inner membrane;6.16595660951885e-14!GO:0017111;nucleoside-triphosphatase activity;8.20029227536692e-14!GO:0003735;structural constituent of ribosome;1.37389913206429e-13!GO:0012505;endomembrane system;3.97865357910378e-13!GO:0044249;cellular biosynthetic process;4.1811475931026e-13!GO:0016874;ligase activity;4.76754826811436e-13!GO:0022613;ribonucleoprotein complex biogenesis and assembly;9.15019454336618e-13!GO:0016070;RNA metabolic process;1.50891464723787e-12!GO:0006511;ubiquitin-dependent protein catabolic process;1.88859617005386e-12!GO:0051603;proteolysis involved in cellular protein catabolic process;1.9210774400868e-12!GO:0006512;ubiquitin cycle;3.05366993450882e-12!GO:0019941;modification-dependent protein catabolic process;3.22999247505017e-12!GO:0043632;modification-dependent macromolecule catabolic process;3.22999247505017e-12!GO:0044257;cellular protein catabolic process;4.13364354633844e-12!GO:0044265;cellular macromolecule catabolic process;4.42932857304663e-12!GO:0033279;ribosomal subunit;5.70272677062375e-12!GO:0031982;vesicle;7.13348784785998e-12!GO:0006457;protein folding;8.68846204618549e-12!GO:0032553;ribonucleotide binding;1.32994101284922e-11!GO:0032555;purine ribonucleotide binding;1.32994101284922e-11!GO:0022618;protein-RNA complex assembly;1.43785261374672e-11!GO:0030695;GTPase regulator activity;3.592586446252e-11!GO:0043412;biopolymer modification;3.61513923657339e-11!GO:0017076;purine nucleotide binding;3.6861056494508e-11!GO:0031410;cytoplasmic vesicle;3.82492595783806e-11!GO:0043228;non-membrane-bound organelle;4.02831108629651e-11!GO:0043232;intracellular non-membrane-bound organelle;4.02831108629651e-11!GO:0044455;mitochondrial membrane part;4.2203784549339e-11!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;5.4039108221734e-11!GO:0050136;NADH dehydrogenase (quinone) activity;6.10237796112792e-11!GO:0003954;NADH dehydrogenase activity;6.10237796112792e-11!GO:0008137;NADH dehydrogenase (ubiquinone) activity;6.10237796112792e-11!GO:0005768;endosome;1.05712290164961e-10!GO:0031988;membrane-bound vesicle;1.30912831781474e-10!GO:0006464;protein modification process;1.38571313999859e-10!GO:0005783;endoplasmic reticulum;1.49105043242653e-10!GO:0006605;protein targeting;1.49499418248062e-10!GO:0005746;mitochondrial respiratory chain;1.60172570882005e-10!GO:0048193;Golgi vesicle transport;1.64246730996095e-10!GO:0016604;nuclear body;1.71909166151848e-10!GO:0050794;regulation of cellular process;2.35129018844796e-10!GO:0043687;post-translational protein modification;3.04068788362609e-10!GO:0043285;biopolymer catabolic process;3.44019050876056e-10!GO:0003676;nucleic acid binding;3.56687497460278e-10!GO:0044445;cytosolic part;4.24913492760337e-10!GO:0016023;cytoplasmic membrane-bound vesicle;5.6929671734948e-10!GO:0051082;unfolded protein binding;9.39725566384958e-10!GO:0016607;nuclear speck;1.36021890362455e-09!GO:0048523;negative regulation of cellular process;1.45510571105973e-09!GO:0008092;cytoskeletal protein binding;1.48198054275363e-09!GO:0008135;translation factor activity, nucleic acid binding;1.52546376280101e-09!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.9880929445969e-09!GO:0030036;actin cytoskeleton organization and biogenesis;2.32954886500878e-09!GO:0030964;NADH dehydrogenase complex (quinone);2.48211054810237e-09!GO:0045271;respiratory chain complex I;2.48211054810237e-09!GO:0005747;mitochondrial respiratory chain complex I;2.48211054810237e-09!GO:0050789;regulation of biological process;3.34895242912033e-09!GO:0042775;organelle ATP synthesis coupled electron transport;3.70356591210679e-09!GO:0042773;ATP synthesis coupled electron transport;3.70356591210679e-09!GO:0044248;cellular catabolic process;3.7040227750861e-09!GO:0008565;protein transporter activity;4.3497695257851e-09!GO:0007264;small GTPase mediated signal transduction;4.97229499715147e-09!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;5.18086220170101e-09!GO:0031252;leading edge;5.56089447483513e-09!GO:0019899;enzyme binding;7.60763718521313e-09!GO:0030163;protein catabolic process;9.19684520586476e-09!GO:0005525;GTP binding;9.21980551129199e-09!GO:0031980;mitochondrial lumen;9.21980551129199e-09!GO:0005759;mitochondrial matrix;9.21980551129199e-09!GO:0000502;proteasome complex (sensu Eukaryota);9.48410876785746e-09!GO:0005635;nuclear envelope;1.52400920709327e-08!GO:0003924;GTPase activity;1.58990085665981e-08!GO:0006461;protein complex assembly;1.69392907362264e-08!GO:0006915;apoptosis;2.33599300368119e-08!GO:0005083;small GTPase regulator activity;2.42036774185806e-08!GO:0012501;programmed cell death;2.42036774185806e-08!GO:0000398;nuclear mRNA splicing, via spliceosome;2.53967362212241e-08!GO:0000375;RNA splicing, via transesterification reactions;2.53967362212241e-08!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.53967362212241e-08!GO:0008219;cell death;2.54005741677963e-08!GO:0016265;death;2.54005741677963e-08!GO:0006446;regulation of translational initiation;2.54005741677963e-08!GO:0009057;macromolecule catabolic process;2.5940788132979e-08!GO:0003712;transcription cofactor activity;2.63867584203472e-08!GO:0030029;actin filament-based process;4.56206311449735e-08!GO:0006913;nucleocytoplasmic transport;4.78976865036438e-08!GO:0031965;nuclear membrane;4.8276795063028e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;5.25323554973465e-08!GO:0048519;negative regulation of biological process;6.45206308135366e-08!GO:0007010;cytoskeleton organization and biogenesis;6.45604651724524e-08!GO:0005730;nucleolus;6.81676366360229e-08!GO:0006793;phosphorus metabolic process;6.83140478907552e-08!GO:0006796;phosphate metabolic process;6.83140478907552e-08!GO:0016044;membrane organization and biogenesis;6.88608576016537e-08!GO:0051169;nuclear transport;8.44672031103168e-08!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.45196260864506e-07!GO:0008639;small protein conjugating enzyme activity;1.67013795999977e-07!GO:0006413;translational initiation;1.68270520828325e-07!GO:0004842;ubiquitin-protein ligase activity;2.20442958408805e-07!GO:0032561;guanyl ribonucleotide binding;2.24142141283454e-07!GO:0019001;guanyl nucleotide binding;2.24142141283454e-07!GO:0003743;translation initiation factor activity;2.31645266301773e-07!GO:0019787;small conjugating protein ligase activity;2.54171400513993e-07!GO:0015935;small ribosomal subunit;2.59444039973725e-07!GO:0016564;transcription repressor activity;3.82490985170568e-07!GO:0006259;DNA metabolic process;4.25710612630117e-07!GO:0051246;regulation of protein metabolic process;7.87268163268121e-07!GO:0008047;enzyme activator activity;7.89020374395994e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;9.75265430493923e-07!GO:0044432;endoplasmic reticulum part;1.03359875901568e-06!GO:0019829;cation-transporting ATPase activity;1.16088951793112e-06!GO:0005096;GTPase activator activity;1.26560207901325e-06!GO:0005524;ATP binding;1.26560207901325e-06!GO:0006366;transcription from RNA polymerase II promoter;1.45808867564286e-06!GO:0032559;adenyl ribonucleotide binding;1.62548835387987e-06!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.65417579062586e-06!GO:0044440;endosomal part;1.6568325196177e-06!GO:0010008;endosome membrane;1.6568325196177e-06!GO:0016881;acid-amino acid ligase activity;2.298138282678e-06!GO:0044431;Golgi apparatus part;2.40172986579363e-06!GO:0016887;ATPase activity;3.40028067706422e-06!GO:0005770;late endosome;3.42518436686371e-06!GO:0015986;ATP synthesis coupled proton transport;3.84880311391064e-06!GO:0015985;energy coupled proton transport, down electrochemical gradient;3.84880311391064e-06!GO:0065007;biological regulation;3.85437679037863e-06!GO:0030554;adenyl nucleotide binding;3.98552186453877e-06!GO:0005769;early endosome;5.01202376754302e-06!GO:0003779;actin binding;5.201507003246e-06!GO:0051186;cofactor metabolic process;5.68340507272137e-06!GO:0006403;RNA localization;5.75908320517862e-06!GO:0015630;microtubule cytoskeleton;6.76970525757922e-06!GO:0050657;nucleic acid transport;6.76970525757922e-06!GO:0051236;establishment of RNA localization;6.76970525757922e-06!GO:0050658;RNA transport;6.76970525757922e-06!GO:0005773;vacuole;6.8840248263583e-06!GO:0044453;nuclear membrane part;7.37090786994452e-06!GO:0042623;ATPase activity, coupled;7.75781136735652e-06!GO:0017038;protein import;8.02788547517448e-06!GO:0007242;intracellular signaling cascade;9.46800886877396e-06!GO:0048475;coated membrane;1.02590999371536e-05!GO:0030117;membrane coat;1.02590999371536e-05!GO:0045045;secretory pathway;1.11622526646815e-05!GO:0015631;tubulin binding;1.12380572282588e-05!GO:0045786;negative regulation of progression through cell cycle;1.17177840750509e-05!GO:0030027;lamellipodium;1.2483360634915e-05!GO:0016310;phosphorylation;1.28247347709192e-05!GO:0048471;perinuclear region of cytoplasm;1.78666961363681e-05!GO:0015934;large ribosomal subunit;1.91027703519962e-05!GO:0006897;endocytosis;2.07697051808164e-05!GO:0010324;membrane invagination;2.07697051808164e-05!GO:0009060;aerobic respiration;2.23540520857295e-05!GO:0007265;Ras protein signal transduction;2.57850435838369e-05!GO:0006325;establishment and/or maintenance of chromatin architecture;2.60948580953186e-05!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.89502599363383e-05!GO:0003714;transcription corepressor activity;2.91708158736482e-05!GO:0000323;lytic vacuole;2.95920147555926e-05!GO:0005764;lysosome;2.95920147555926e-05!GO:0042175;nuclear envelope-endoplasmic reticulum network;3.08971632299503e-05!GO:0045333;cellular respiration;3.12758312124339e-05!GO:0016469;proton-transporting two-sector ATPase complex;3.13401486455187e-05!GO:0016568;chromatin modification;3.23016948157092e-05!GO:0009056;catabolic process;3.2470336865448e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;4.52297392913819e-05!GO:0006163;purine nucleotide metabolic process;4.78232038296197e-05!GO:0005789;endoplasmic reticulum membrane;4.78232038296197e-05!GO:0005643;nuclear pore;4.79592256050552e-05!GO:0046034;ATP metabolic process;4.85705779824063e-05!GO:0005793;ER-Golgi intermediate compartment;5.08609609580411e-05!GO:0051128;regulation of cellular component organization and biogenesis;5.15799771341617e-05!GO:0009150;purine ribonucleotide metabolic process;5.54584030555983e-05!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);6.08493214184153e-05!GO:0006164;purine nucleotide biosynthetic process;6.57100666901219e-05!GO:0006323;DNA packaging;6.6325152887962e-05!GO:0006754;ATP biosynthetic process;6.74753857151231e-05!GO:0006753;nucleoside phosphate metabolic process;6.74753857151231e-05!GO:0009152;purine ribonucleotide biosynthetic process;7.30444843808921e-05!GO:0009055;electron carrier activity;7.42923618255397e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;8.0081210320739e-05!GO:0006613;cotranslational protein targeting to membrane;8.0480911106297e-05!GO:0045259;proton-transporting ATP synthase complex;8.06687333793459e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;8.80055021080949e-05!GO:0005761;mitochondrial ribosome;8.80055021080949e-05!GO:0000313;organellar ribosome;8.80055021080949e-05!GO:0000245;spliceosome assembly;9.33711987310989e-05!GO:0009259;ribonucleotide metabolic process;9.78032653402543e-05!GO:0006606;protein import into nucleus;9.91563577243654e-05!GO:0051028;mRNA transport;0.000104072255828354!GO:0001726;ruffle;0.000104363922358134!GO:0009966;regulation of signal transduction;0.000107095747669905!GO:0006099;tricarboxylic acid cycle;0.000109176930539395!GO:0046356;acetyl-CoA catabolic process;0.000109176930539395!GO:0051170;nuclear import;0.000111584997565626!GO:0043069;negative regulation of programmed cell death;0.00011410018686112!GO:0032940;secretion by cell;0.000115795612211305!GO:0043066;negative regulation of apoptosis;0.000121243545413927!GO:0016197;endosome transport;0.000122215811819006!GO:0006888;ER to Golgi vesicle-mediated transport;0.000140205691733979!GO:0000139;Golgi membrane;0.000142323317590893!GO:0009205;purine ribonucleoside triphosphate metabolic process;0.000148495721248056!GO:0009144;purine nucleoside triphosphate metabolic process;0.000148495721248056!GO:0043566;structure-specific DNA binding;0.000148750572023856!GO:0008287;protein serine/threonine phosphatase complex;0.000150530582046711!GO:0006732;coenzyme metabolic process;0.000161638763635031!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.000165607021801413!GO:0007243;protein kinase cascade;0.000168297947891505!GO:0009199;ribonucleoside triphosphate metabolic process;0.00017395311658938!GO:0009109;coenzyme catabolic process;0.0001798146564409!GO:0009892;negative regulation of metabolic process;0.000199624235567755!GO:0019222;regulation of metabolic process;0.000199624235567755!GO:0015078;hydrogen ion transmembrane transporter activity;0.000200736324282628!GO:0030120;vesicle coat;0.000200736324282628!GO:0030662;coated vesicle membrane;0.000200736324282628!GO:0003713;transcription coactivator activity;0.000217986149152445!GO:0005798;Golgi-associated vesicle;0.000224096160234778!GO:0004386;helicase activity;0.000261614422640061!GO:0009260;ribonucleotide biosynthetic process;0.000268409268224168!GO:0009141;nucleoside triphosphate metabolic process;0.000273374457737707!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;0.000279319066420426!GO:0009145;purine nucleoside triphosphate biosynthetic process;0.000279319066420426!GO:0048468;cell development;0.000284944199465356!GO:0000151;ubiquitin ligase complex;0.000286756541782864!GO:0031072;heat shock protein binding;0.00030018412966496!GO:0051187;cofactor catabolic process;0.00030018412966496!GO:0009142;nucleoside triphosphate biosynthetic process;0.000335666979724049!GO:0009201;ribonucleoside triphosphate biosynthetic process;0.000335666979724049!GO:0032446;protein modification by small protein conjugation;0.000348496155943493!GO:0008017;microtubule binding;0.000392251959364036!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000397443718589504!GO:0008026;ATP-dependent helicase activity;0.000433987376390909!GO:0005905;coated pit;0.000437035171531041!GO:0030867;rough endoplasmic reticulum membrane;0.000438081921051665!GO:0006084;acetyl-CoA metabolic process;0.000442570422129008!GO:0006916;anti-apoptosis;0.000466863257741346!GO:0030133;transport vesicle;0.000481717045829568!GO:0005874;microtubule;0.000495429926004711!GO:0007049;cell cycle;0.000510680911057491!GO:0031324;negative regulation of cellular metabolic process;0.000520255494803208!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000531848871727971!GO:0016481;negative regulation of transcription;0.000627092435996092!GO:0016567;protein ubiquitination;0.000627176157333374!GO:0000074;regulation of progression through cell cycle;0.000630091927334117!GO:0051726;regulation of cell cycle;0.000642066402827168!GO:0003729;mRNA binding;0.000658700197977804!GO:0031901;early endosome membrane;0.000689219556656078!GO:0016791;phosphoric monoester hydrolase activity;0.000710725509400744!GO:0006607;NLS-bearing substrate import into nucleus;0.000751312385615456!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000751856460596778!GO:0015399;primary active transmembrane transporter activity;0.000751856460596778!GO:0006402;mRNA catabolic process;0.000796280096920236!GO:0006974;response to DNA damage stimulus;0.000824391124679903!GO:0005085;guanyl-nucleotide exchange factor activity;0.00085543335065717!GO:0042802;identical protein binding;0.000927811858025504!GO:0042981;regulation of apoptosis;0.00100859755173296!GO:0008654;phospholipid biosynthetic process;0.00101558743385403!GO:0051789;response to protein stimulus;0.00104849768344299!GO:0006986;response to unfolded protein;0.00104849768344299!GO:0051056;regulation of small GTPase mediated signal transduction;0.00108666180363974!GO:0043067;regulation of programmed cell death;0.00117869267852648!GO:0008154;actin polymerization and/or depolymerization;0.00120310971962468!GO:0003724;RNA helicase activity;0.0012563779253359!GO:0000902;cell morphogenesis;0.00127990135912403!GO:0032989;cellular structure morphogenesis;0.00127990135912403!GO:0005741;mitochondrial outer membrane;0.00141232394768659!GO:0043492;ATPase activity, coupled to movement of substances;0.00144886934842624!GO:0005791;rough endoplasmic reticulum;0.00144886934842624!GO:0051276;chromosome organization and biogenesis;0.00145050168108543!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00145486490687703!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.00145486490687703!GO:0004812;aminoacyl-tRNA ligase activity;0.00145486490687703!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.00145486490687703!GO:0006612;protein targeting to membrane;0.00146479348934314!GO:0019867;outer membrane;0.0015137172639457!GO:0003697;single-stranded DNA binding;0.00158554301985179!GO:0000159;protein phosphatase type 2A complex;0.00170542525010623!GO:0031968;organelle outer membrane;0.00170755202709169!GO:0001666;response to hypoxia;0.00173381781637416!GO:0005839;proteasome core complex (sensu Eukaryota);0.00177367150965708!GO:0007272;ensheathment of neurons;0.00178377265753479!GO:0008366;axon ensheathment;0.00178377265753479!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.00179316359821102!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00192602277082427!GO:0015980;energy derivation by oxidation of organic compounds;0.00193807271906637!GO:0051188;cofactor biosynthetic process;0.00205634793309917!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00207461474588172!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.00207659801797457!GO:0008361;regulation of cell size;0.00213301156306842!GO:0046930;pore complex;0.00219650372280696!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00219650372280696!GO:0043038;amino acid activation;0.00219650372280696!GO:0006418;tRNA aminoacylation for protein translation;0.00219650372280696!GO:0043039;tRNA aminoacylation;0.00219650372280696!GO:0006650;glycerophospholipid metabolic process;0.00222322683267954!GO:0005813;centrosome;0.00223998309562937!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00239754911605216!GO:0030118;clathrin coat;0.00246426306844576!GO:0045892;negative regulation of transcription, DNA-dependent;0.00247139533174979!GO:0051087;chaperone binding;0.00265213583913121!GO:0005099;Ras GTPase activator activity;0.00268115569941533!GO:0051168;nuclear export;0.0026870189824522!GO:0006401;RNA catabolic process;0.00274844363424056!GO:0004721;phosphoprotein phosphatase activity;0.00275775884914102!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00276681266728216!GO:0051427;hormone receptor binding;0.00279936972030135!GO:0008601;protein phosphatase type 2A regulator activity;0.00280289009353372!GO:0031902;late endosome membrane;0.00280289009353372!GO:0065002;intracellular protein transport across a membrane;0.00280340626752198!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00286664414276185!GO:0007050;cell cycle arrest;0.00286664414276185!GO:0043623;cellular protein complex assembly;0.00303695671787532!GO:0006752;group transfer coenzyme metabolic process;0.00312226982273752!GO:0030041;actin filament polymerization;0.00331867860055573!GO:0019904;protein domain specific binding;0.00333925108529752!GO:0016311;dephosphorylation;0.00345864820161391!GO:0043087;regulation of GTPase activity;0.0035008819832946!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.00350897843020404!GO:0007019;microtubule depolymerization;0.00365674235375826!GO:0005667;transcription factor complex;0.00380783459030343!GO:0005100;Rho GTPase activator activity;0.00384385087706629!GO:0008286;insulin receptor signaling pathway;0.00387274917492291!GO:0043209;myelin sheath;0.00398348515333396!GO:0016049;cell growth;0.00405060974512547!GO:0001508;regulation of action potential;0.00414975223855945!GO:0007266;Rho protein signal transduction;0.0042123032790989!GO:0003690;double-stranded DNA binding;0.0042123032790989!GO:0006643;membrane lipid metabolic process;0.00424717982416386!GO:0030532;small nuclear ribonucleoprotein complex;0.00433703426200464!GO:0046467;membrane lipid biosynthetic process;0.00441817444800636!GO:0005885;Arp2/3 protein complex;0.00447937521386858!GO:0035257;nuclear hormone receptor binding;0.00461973754852038!GO:0008139;nuclear localization sequence binding;0.00465166613610256!GO:0005815;microtubule organizing center;0.00477167980832356!GO:0051129;negative regulation of cellular component organization and biogenesis;0.00479221778242537!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00485301602954263!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.00495524905323926!GO:0016563;transcription activator activity;0.00510915008465472!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00513431851129333!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00513431851129333!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00513431851129333!GO:0065009;regulation of a molecular function;0.00540111212909031!GO:0031111;negative regulation of microtubule polymerization or depolymerization;0.00568481014297741!GO:0050811;GABA receptor binding;0.00568481014297741!GO:0046578;regulation of Ras protein signal transduction;0.00580271822613486!GO:0022890;inorganic cation transmembrane transporter activity;0.00591500209827791!GO:0016363;nuclear matrix;0.00614318152211649!GO:0030865;cortical cytoskeleton organization and biogenesis;0.00624110608319005!GO:0051920;peroxiredoxin activity;0.00637933792450517!GO:0004298;threonine endopeptidase activity;0.00653855463363838!GO:0007034;vacuolar transport;0.00752265853669283!GO:0030384;phosphoinositide metabolic process;0.00835065456991785!GO:0019717;synaptosome;0.00837903651876657!GO:0009108;coenzyme biosynthetic process;0.00842796128407938!GO:0006891;intra-Golgi vesicle-mediated transport;0.00879733552165182!GO:0004722;protein serine/threonine phosphatase activity;0.00892925350958257!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00895310935151231!GO:0042254;ribosome biogenesis and assembly;0.00899222617927292!GO:0006950;response to stress;0.00914298297650731!GO:0048487;beta-tubulin binding;0.00989907283762655!GO:0043021;ribonucleoprotein binding;0.00999530561454533!GO:0006810;transport;0.0100392554798446!GO:0031323;regulation of cellular metabolic process;0.0100511300911876!GO:0006470;protein amino acid dephosphorylation;0.0102593236282005!GO:0048500;signal recognition particle;0.0104783727476479!GO:0019208;phosphatase regulator activity;0.0108475263270746!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.0108767914716002!GO:0051179;localization;0.0109364391165331!GO:0006281;DNA repair;0.01131752656672!GO:0031114;regulation of microtubule depolymerization;0.011626110052383!GO:0007026;negative regulation of microtubule depolymerization;0.011626110052383!GO:0031124;mRNA 3'-end processing;0.011668750158195!GO:0048154;S100 beta binding;0.0120427693715609!GO:0045187;regulation of circadian sleep/wake cycle, sleep;0.0120427693715609!GO:0004667;prostaglandin-D synthase activity;0.0120427693715609!GO:0050802;circadian sleep/wake cycle, sleep;0.0120427693715609!GO:0022410;circadian sleep/wake cycle process;0.0120427693715609!GO:0042749;regulation of circadian sleep/wake cycle;0.0120427693715609!GO:0008186;RNA-dependent ATPase activity;0.0121145899877707!GO:0005938;cell cortex;0.0121998390517386!GO:0030258;lipid modification;0.0122946802274662!GO:0003702;RNA polymerase II transcription factor activity;0.012552178471467!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.0129489299666478!GO:0022406;membrane docking;0.0137123637893825!GO:0048278;vesicle docking;0.0137123637893825!GO:0005048;signal sequence binding;0.0137436513746703!GO:0030135;coated vesicle;0.0138329902039417!GO:0005774;vacuolar membrane;0.0138329902039417!GO:0000059;protein import into nucleus, docking;0.0141627791937395!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0145018582925968!GO:0051020;GTPase binding;0.015467907263626!GO:0030742;GTP-dependent protein binding;0.0155304081453192!GO:0019902;phosphatase binding;0.0160589390488669!GO:0008610;lipid biosynthetic process;0.0170932690491674!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0172692078007987!GO:0035035;histone acetyltransferase binding;0.0173098245525897!GO:0019783;small conjugating protein-specific protease activity;0.0190361303416851!GO:0010468;regulation of gene expression;0.0191694642568443!GO:0051261;protein depolymerization;0.0193767823770543!GO:0005765;lysosomal membrane;0.0193767823770543!GO:0033673;negative regulation of kinase activity;0.0193767823770543!GO:0006469;negative regulation of protein kinase activity;0.0193767823770543!GO:0007041;lysosomal transport;0.0194172258850598!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0196065504322146!GO:0045047;protein targeting to ER;0.0196065504322146!GO:0022402;cell cycle process;0.0197282447608672!GO:0030658;transport vesicle membrane;0.0198318484030171!GO:0009117;nucleotide metabolic process;0.0205237779873505!GO:0006350;transcription;0.0205240972716766!GO:0030569;chymotrypsin inhibitor activity;0.0205736200264244!GO:0006904;vesicle docking during exocytosis;0.020955526260592!GO:0009719;response to endogenous stimulus;0.0212355897623708!GO:0042026;protein refolding;0.0219857738270547!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.0220457796556256!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0221814338544245!GO:0004843;ubiquitin-specific protease activity;0.0227701330927707!GO:0035258;steroid hormone receptor binding;0.0245249296466634!GO:0016050;vesicle organization and biogenesis;0.0245249296466634!GO:0005788;endoplasmic reticulum lumen;0.0246020087779326!GO:0001887;selenium metabolic process;0.0246835603959736!GO:0045893;positive regulation of transcription, DNA-dependent;0.0251943288981094!GO:0043488;regulation of mRNA stability;0.0252068397547457!GO:0043487;regulation of RNA stability;0.0252068397547457!GO:0006383;transcription from RNA polymerase III promoter;0.0260661894414096!GO:0000118;histone deacetylase complex;0.0260907961214016!GO:0007005;mitochondrion organization and biogenesis;0.0262290030041554!GO:0008312;7S RNA binding;0.0274295679865304!GO:0017166;vinculin binding;0.0274295679865304!GO:0046839;phospholipid dephosphorylation;0.0276939162277079!GO:0046983;protein dimerization activity;0.0281334067339048!GO:0006633;fatty acid biosynthetic process;0.0284829097950522!GO:0051252;regulation of RNA metabolic process;0.0284829097950522!GO:0051539;4 iron, 4 sulfur cluster binding;0.0285187278975719!GO:0015629;actin cytoskeleton;0.0287125422745905!GO:0001558;regulation of cell growth;0.0288192919843385!GO:0004674;protein serine/threonine kinase activity;0.0292097624475509!GO:0051348;negative regulation of transferase activity;0.0292097624475509!GO:0004004;ATP-dependent RNA helicase activity;0.029336464252729!GO:0006333;chromatin assembly or disassembly;0.0295509358275383!GO:0042552;myelination;0.0299362628024754!GO:0046474;glycerophospholipid biosynthetic process;0.0304790133392251!GO:0004221;ubiquitin thiolesterase activity;0.0308128131665216!GO:0006376;mRNA splice site selection;0.0308128131665216!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0308128131665216!GO:0006672;ceramide metabolic process;0.0308128131665216!GO:0046489;phosphoinositide biosynthetic process;0.0309422021847514!GO:0051287;NAD binding;0.0311079388834444!GO:0045947;negative regulation of translational initiation;0.0311107653982676!GO:0016859;cis-trans isomerase activity;0.0314654534791389!GO:0016740;transferase activity;0.0315068998154608!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0316924374652405!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0317803786838161!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0317803786838161!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0317911070687604!GO:0000209;protein polyubiquitination;0.0317911070687604!GO:0006611;protein export from nucleus;0.0317911070687604!GO:0012506;vesicle membrane;0.0317911070687604!GO:0019888;protein phosphatase regulator activity;0.0321131217484079!GO:0042578;phosphoric ester hydrolase activity;0.0321810264674306!GO:0003725;double-stranded RNA binding;0.0327888722019447!GO:0005875;microtubule associated complex;0.0337999768837527!GO:0030660;Golgi-associated vesicle membrane;0.0348053670949717!GO:0006378;mRNA polyadenylation;0.0354655692414514!GO:0051098;regulation of binding;0.0354889077592945!GO:0031123;RNA 3'-end processing;0.0357407357587847!GO:0016408;C-acyltransferase activity;0.0359499738946948!GO:0046870;cadmium ion binding;0.0362004891303631!GO:0030119;AP-type membrane coat adaptor complex;0.0374813014145409!GO:0030132;clathrin coat of coated pit;0.0395960799168664!GO:0019911;structural constituent of myelin sheath;0.0398679304926438!GO:0044437;vacuolar part;0.0403707762121169!GO:0030521;androgen receptor signaling pathway;0.0406440317503951!GO:0006644;phospholipid metabolic process;0.0406662378247927!GO:0006665;sphingolipid metabolic process;0.0414109149848208!GO:0016301;kinase activity;0.0417530964114279!GO:0032318;regulation of Ras GTPase activity;0.0426683096030203!GO:0030031;cell projection biogenesis;0.0433063737925073!GO:0031109;microtubule polymerization or depolymerization;0.0444665062700499!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0445622540247507!GO:0033043;regulation of organelle organization and biogenesis;0.0445622540247507!GO:0030131;clathrin adaptor complex;0.0445752013218945!GO:0051540;metal cluster binding;0.0445752013218945!GO:0051536;iron-sulfur cluster binding;0.0445752013218945!GO:0003746;translation elongation factor activity;0.0445752013218945!GO:0006892;post-Golgi vesicle-mediated transport;0.0446744155235086!GO:0005869;dynactin complex;0.0447239476162547!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0452163987732887!GO:0044448;cell cortex part;0.0453929703948085!GO:0015682;ferric iron transport;0.0457955819008176!GO:0015091;ferric iron transmembrane transporter activity;0.0457955819008176!GO:0031643;positive regulation of myelination;0.0457955819008176!GO:0005545;phosphatidylinositol binding;0.0457955819008176!GO:0016126;sterol biosynthetic process;0.0462463091797145!GO:0030663;COPI coated vesicle membrane;0.0462463091797145!GO:0030126;COPI vesicle coat;0.0462463091797145!GO:0008250;oligosaccharyl transferase complex;0.046315650082336!GO:0005088;Ras guanyl-nucleotide exchange factor activity;0.047201894867358!GO:0009066;aspartate family amino acid metabolic process;0.0474352483689653!GO:0006399;tRNA metabolic process;0.0474352483689653!GO:0006414;translational elongation;0.0490558034292392!GO:0046519;sphingoid metabolic process;0.0490558034292392!GO:0051101;regulation of DNA binding;0.0495135660671257
+|sample_id=10159
+|sample_note=
+|sample_sex=female
+|sample_species=Human (Homo sapiens)
+|sample_strain=
+|sample_tissue=spinal cord
+|top_motifs=SOX2:3.51961377734;NFIX:3.4758119206;EP300:3.02634851096;GATA4:3.01587883798;SOX{8,9,10}:2.98062434898;SOX5:2.9698740497;BPTF:2.79660258958;RREB1:2.72893366293;HOX{A6,A7,B6,B7}:2.48595467957;TGIF1:2.43929579309;PRDM1:2.35588732447;MYFfamily:2.34057614065;RBPJ:2.3171773668;ZFP161:2.29192220121;NKX3-2:2.24804098935;POU6F1:2.11929301838;FOXQ1:2.07776107201;NR3C1:2.04611735393;FOXO1,3,4:2.02048789324;STAT1,3:2.00707325087;GTF2I:1.97839139299;ATF2:1.93876374692;CUX2:1.86761668168;POU5F1:1.86593251494;FOX{I1,J2}:1.84905825203;MED-1{core}:1.83244446081;PATZ1:1.82876508602;FOX{D1,D2}:1.81232252982;MZF1:1.81107629455;FOXD3:1.80038538266;OCT4_SOX2{dimer}:1.78623701329;NHLH1,2:1.76911477161;DBP:1.76187794892;FOXP3:1.75204625003;PRRX1,2:1.72111238654;FOX{F1,F2,J1}:1.71544885674;REST:1.70902122083;AR:1.66727081101;RFX2..5_RFXANK_RFXAP:1.63829610294;MAFB:1.59908517706;SOX17:1.59501559149;MTF1:1.58938694656;SREBF1,2:1.58709649549;PDX1:1.58004778484;MAZ:1.56249433613;MTE{core}:1.55087961664;ZBTB6:1.53905148483;HBP1_HMGB_SSRP1_UBTF:1.52436456225;MYBL2:1.49182897204;POU3F1..4:1.47562326467;SP1:1.46147781263;HIC1:1.46101904861;TFAP2B:1.45442486787;SMAD1..7,9:1.43254393805;PAX6:1.41297779771;STAT2,4,6:1.39557875743;NANOG:1.35758266339;VSX1,2:1.3135258071;FOXP1:1.3091168688;NRF1:1.18533816176;ZNF384:1.17000221757;LMO2:1.14223516764;TLX1..3_NFIC{dimer}:1.13298730942;RFX1:1.10936245172;TLX2:1.09432130219;EGR1..3:1.05439622509;GFI1B:1.04750190149;HSF1,2:1.02583699994;HMGA1,2:1.00868322728;ZNF143:1.00692461648;BREu{core}:1.00190994093;TFAP2{A,C}:0.983464264698;NKX6-1,2:0.972551139968;JUN:0.922065689818;ZNF423:0.898226435306;IRF7:0.889332274428;EBF1:0.8879205842;XBP1:0.88769440241;KLF4:0.851443422887;IKZF2:0.81940234957;PAX5:0.786897031148;ZIC1..3:0.752375798617;GFI1:0.737533420494;FOXM1:0.731967047457;GCM1,2:0.72417585725;HAND1,2:0.70004731651;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.678860871058;T:0.636296622234;NFATC1..3:0.627188244347;LEF1_TCF7_TCF7L1,2:0.60703317788;TOPORS:0.604102720592;RORA:0.565887186872;PBX1:0.514884403031;FOXA2:0.473755151315;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.468953706471;NFY{A,B,C}:0.465447439446;TFCP2:0.43561436386;CREB1:0.430145823651;SPZ1:0.390378895299;IRF1,2:0.347047622239;HOX{A4,D4}:0.317167742296;NFIL3:0.316988605421;NANOG{mouse}:0.294808894337;CDC5L:0.277343253843;CRX:0.264572509393;AHR_ARNT_ARNT2:0.242288684073;GZF1:0.178765377906;TFDP1:0.178056402099;NKX2-3_NKX2-5:0.153485536555;PAX2:0.153368024815;ZBTB16:0.141602009032;HMX1:0.11688123589;GTF2A1,2:0.0946816789792;ETS1,2:0.092189852519;PAX4:0.0865808224524;ATF4:0.0407169242555;PITX1..3:0.0363222059731;ONECUT1,2:0.0334799343947;NFE2L2:0.0334080155336;ARID5B:-0.0159989127662;DMAP1_NCOR{1,2}_SMARC:-0.0267357396129;SPIB:-0.0501004675525;ATF5_CREB3:-0.070515601013;ELF1,2,4:-0.0888628385763;CDX1,2,4:-0.0910478759756;HIF1A:-0.0923229955328;FOXN1:-0.0979928361201;SPI1:-0.0989715251889;MEF2{A,B,C,D}:-0.139362939913;NR6A1:-0.209917265447;POU1F1:-0.221041905354;CEBPA,B_DDIT3:-0.263132370629;NR1H4:-0.274679716644;HNF4A_NR2F1,2:-0.282955379263;HOXA9_MEIS1:-0.352113018806;TFAP4:-0.355305513405;ALX4:-0.356617001756;TP53:-0.357460785546;bHLH_family:-0.370309638923;ATF6:-0.37272666055;LHX3,4:-0.401411392077;TBP:-0.403515908792;ESRRA:-0.42815017982;YY1:-0.448505343046;MYOD1:-0.448951287948;NFE2:-0.450619828446;NFE2L1:-0.461652777027;XCPE1{core}:-0.468896389085;AIRE:-0.469516580349;GATA6:-0.469862652291;IKZF1:-0.517468346062;ALX1:-0.584045256695;NKX2-1,4:-0.590261002767;EVI1:-0.599918023563;ZNF238:-0.619915812125;NR5A1,2:-0.629323154689;SRF:-0.653008899201;NKX3-1:-0.670084700719;ZEB1:-0.678597456342;PAX3,7:-0.692721439702;TEAD1:-0.706572171804;PAX8:-0.738155915894;UFEwm:-0.743053585273;FOSL2:-0.7518082835;TEF:-0.7604765348;ELK1,4_GABP{A,B1}:-0.79323545887;E2F1..5:-0.807198876365;HNF1A:-0.836805179642;NKX2-2,8:-0.856022710173;TBX4,5:-0.86066695108;ADNP_IRX_SIX_ZHX:-0.889576506539;HLF:-0.897442432944;TAL1_TCF{3,4,12}:-0.902208171765;NFKB1_REL_RELA:-0.90235509989;RUNX1..3:-0.903890687332;FOS_FOS{B,L1}_JUN{B,D}:-0.912857929423;BACH2:-0.975763258744;MYB:-1.03223005107;SNAI1..3:-1.03586380635;RXRA_VDR{dimer}:-1.09044215169;RXR{A,B,G}:-1.10982115359;FOXL1:-1.14115555006;ZNF148:-1.26125208647;POU2F1..3:-1.37168229088;PPARG:-1.39363779122;PAX1,9:-1.49857631344;HES1:-1.49897773131;GLI1..3:-1.80926531221;EN1,2:-1.84948698378;ESR1:-1.97280158726;HOX{A5,B5}:-2.06737605874;STAT5{A,B}:-2.32246987152
+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10159-103A6;search_select_hide=table117:FF:10159-103A6
 }}

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FF:10159-103A6: Difference between revisions

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Latest revision as of 12:23, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0