FFCP PHASE1:Hg19::chr11:117102768..117102820,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr11:117102768..117102820,- to FFCP PHASE1:Hg19::chr11:117102768..117102820,-: NSchange) |
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(9 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=9159 | |EntrezGene=9159 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8748 | |HGNC=8748 | ||
|TSSclassifier=strong | |||
|UniProt=E9PLM0,Q16549 | |UniProt=E9PLM0,Q16549 | ||
|association_with_transcript=0bp_to_ENST00000532301,NM_004716,uc001pqr.2_5end | |||
|cluster_id=chr11:117102768..117102820,- | |||
|description=CAGE_peak_1_at_PCSK7_5end | |||
|id=chr11:117102768..117102820,- | |||
|ontology_enrichment_celltype=CL:0000183!1.01e-11!59;CL:0002371!4.14e-11!591;CL:0000680!4.14e-11!57;CL:0000056!4.14e-11!57;CL:0000355!4.14e-11!57;CL:0000192!6.61e-11!42;CL:0000514!6.61e-11!42;CL:0000791!1.24e-10!18;CL:0000789!1.24e-10!18;CL:0002420!1.24e-10!18;CL:0002419!1.24e-10!18;CL:0000790!1.24e-10!18;CL:0000838!1.94e-10!52;CL:0000187!3.23e-10!54;CL:0000003!4.19e-10!722;CL:0000055!5.52e-10!180;CL:0000222!5.53e-10!119;CL:0000542!5.57e-10!53;CL:0000051!5.57e-10!53;CL:0000359!5.69e-09!32;CL:0000393!1.02e-08!60;CL:0000211!1.02e-08!60;CL:0000144!1.67e-08!625;CL:0000723!7.30e-08!436;CL:0000048!1.45e-07!430;CL:0000625!2.87e-07!11;CL:0000084!3.15e-07!25;CL:0000827!3.15e-07!25;CL:0000034!6.43e-07!444 | |||
|ontology_enrichment_celltype_v019=CL:0000791;1.36e-10;18!CL:0000789;1.36e-10;18!CL:0002419;1.36e-10;18!CL:0000359;1.08e-08;32!CL:0000192;3.62e-08;43!CL:0000625;3.04e-07;11!CL:0000084;3.15e-07;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000680,3.96e-11,58;CL:0000056,3.96e-11,58;CL:0000355,3.96e-11,58;CL:0000192,6.75e-11,43;CL:0000514,6.75e-11,43;CL:0000791,1.24e-10,18;CL:0000789,1.24e-10,18;CL:0002420,1.24e-10,18;CL:0002419,1.24e-10,18;CL:0000790,1.24e-10,18;CL:0000838,1.94e-10,52;CL:0000222,2.83e-10,121;CL:0000187,3.07e-10,55;CL:0000542,5.57e-10,53;CL:0000051,5.57e-10,53;CL:0000359,5.69e-09,32;CL:0000393,9.37e-09,61;CL:0000211,9.37e-09,61;CL:0000723,2.35e-08,433;CL:0000048,4.78e-08,427;CL:0000034,2.25e-07,441;CL:0000625,2.87e-07,11;CL:0000084,3.15e-07,25;CL:0000827,3.15e-07,25 | |||
|ontology_enrichment_development_v019=CL:0000790;1.36e-10;18!CL:0000514;3.62e-08;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004535!1.36e-12!110;UBERON:0001009!1.56e-11!113;UBERON:0004872!3.75e-11!84;UBERON:0001637!3.68e-10!42;UBERON:0003509!3.68e-10!42;UBERON:0004572!3.68e-10!42;UBERON:0002049!6.23e-10!79;UBERON:0007798!6.23e-10!79;UBERON:0000055!1.08e-09!69;UBERON:0001981!1.43e-09!60;UBERON:0007500!1.43e-09!60;UBERON:0004537!1.43e-09!60;UBERON:0006965!1.43e-09!60;UBERON:0004290!2.08e-09!70;UBERON:0000914!2.64e-09!83;UBERON:0002329!2.64e-09!83;UBERON:0003077!2.64e-09!83;UBERON:0003059!2.64e-09!83;UBERON:0007282!2.64e-09!83;UBERON:0009618!2.64e-09!83;UBERON:0007285!2.64e-09!83;UBERON:0001134!8.59e-09!61;UBERON:0002036!8.59e-09!61;UBERON:0003082!8.59e-09!61;UBERON:0000486!1.18e-08!82;UBERON:0004573!2.02e-08!33;UBERON:0004571!2.02e-08!33;UBERON:0002385!2.37e-08!63;UBERON:0001015!2.37e-08!63;UBERON:0000383!2.37e-08!63;UBERON:0003914!1.19e-07!118 | |||
|ontology_enrichment_uberon_v019=UBERON:0001637;5.62e-08;42!UBERON:0003509;5.62e-08;42!UBERON:0004572;5.62e-08;42!UBERON:0004573;1.76e-07;33!UBERON:0004571;1.76e-07;33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004535,1.27e-12,109;UBERON:0007503,1.11e-11,78;UBERON:0001009,1.47e-11,112;UBERON:0004872,3.38e-11,83;UBERON:0001637,3.68e-10,42;UBERON:0003509,3.68e-10,42;UBERON:0004572,3.68e-10,42;UBERON:0002049,5.67e-10,78;UBERON:0007798,5.67e-10,78;UBERON:0000055,9.65e-10,68;UBERON:0007500,1.24e-09,59;UBERON:0001981,1.24e-09,59;UBERON:0004537,1.24e-09,59;UBERON:0006965,1.24e-09,59;UBERON:0002329,1.89e-09,71;UBERON:0003059,1.89e-09,71;UBERON:0007282,1.89e-09,71;UBERON:0004290,1.89e-09,71;UBERON:0009618,1.89e-09,71;UBERON:0003077,1.93e-09,72;UBERON:0007285,1.93e-09,72;UBERON:0007524,2.50e-09,73;UBERON:0001134,7.87e-09,62;UBERON:0002036,7.87e-09,62;UBERON:0003082,7.87e-09,62;UBERON:0000486,1.05e-08,83;UBERON:0004573,2.02e-08,33;UBERON:0004571,2.02e-08,33;UBERON:0002385,2.15e-08,64;UBERON:0001015,2.15e-08,64;UBERON:0000383,2.15e-08,64;UBERON:0003914,1.35e-07,117 | |||
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| ||
|short_description=p1@PCSK7 | |||
}} | }} |
Latest revision as of 21:16, 15 September 2015
Short description: | p1@PCSK7 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PCSK7_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000532301, NM_004716, uc001pqr.2_5end |
EntrezGene: | PCSK7 |
HGNC: | 8748 |
UniProt: | E9PLM0Q16549 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
muscle precursor cell | 3.96e-11 | 58 |
myoblast | 3.96e-11 | 58 |
multi-potent skeletal muscle stem cell | 3.96e-11 | 58 |
smooth muscle cell | 6.75e-11 | 43 |
smooth muscle myoblast | 6.75e-11 | 43 |
mature alpha-beta T cell | 1.24e-10 | 18 |
alpha-beta T cell | 1.24e-10 | 18 |
immature T cell | 1.24e-10 | 18 |
mature T cell | 1.24e-10 | 18 |
immature alpha-beta T cell | 1.24e-10 | 18 |
lymphoid lineage restricted progenitor cell | 1.94e-10 | 52 |
mesodermal cell | 2.83e-10 | 121 |
muscle cell | 3.07e-10 | 55 |
lymphocyte | 5.57e-10 | 53 |
common lymphoid progenitor | 5.57e-10 | 53 |
vascular associated smooth muscle cell | 5.69e-09 | 32 |
electrically responsive cell | 9.37e-09 | 61 |
electrically active cell | 9.37e-09 | 61 |
somatic stem cell | 2.35e-08 | 433 |
multi fate stem cell | 4.78e-08 | 427 |
stem cell | 2.25e-07 | 441 |
CD8-positive, alpha-beta T cell | 2.87e-07 | 11 |
T cell | 3.15e-07 | 25 |
pro-T cell | 3.15e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
cardiovascular system | 1.27e-12 | 109 |
epithelial vesicle | 1.11e-11 | 78 |
circulatory system | 1.47e-11 | 112 |
splanchnic layer of lateral plate mesoderm | 3.38e-11 | 83 |
artery | 3.68e-10 | 42 |
arterial blood vessel | 3.68e-10 | 42 |
arterial system | 3.68e-10 | 42 |
vasculature | 5.67e-10 | 78 |
vascular system | 5.67e-10 | 78 |
vessel | 9.65e-10 | 68 |
epithelial tube open at both ends | 1.24e-09 | 59 |
blood vessel | 1.24e-09 | 59 |
blood vasculature | 1.24e-09 | 59 |
vascular cord | 1.24e-09 | 59 |
somite | 1.89e-09 | 71 |
presomitic mesoderm | 1.89e-09 | 71 |
presumptive segmental plate | 1.89e-09 | 71 |
dermomyotome | 1.89e-09 | 71 |
trunk paraxial mesoderm | 1.89e-09 | 71 |
paraxial mesoderm | 1.93e-09 | 72 |
presumptive paraxial mesoderm | 1.93e-09 | 72 |
dense mesenchyme tissue | 2.50e-09 | 73 |
skeletal muscle tissue | 7.87e-09 | 62 |
striated muscle tissue | 7.87e-09 | 62 |
myotome | 7.87e-09 | 62 |
multilaminar epithelium | 1.05e-08 | 83 |
systemic artery | 2.02e-08 | 33 |
systemic arterial system | 2.02e-08 | 33 |
muscle tissue | 2.15e-08 | 64 |
musculature | 2.15e-08 | 64 |
musculature of body | 2.15e-08 | 64 |
epithelial tube | 1.35e-07 | 117 |