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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005606
|DRA_sample_Accession=CAGE@SAMD00005606
|accession_numbers=CAGE;DRX008047;DRR008919;DRZ000344;DRZ001729
|accession_numbers=CAGE;DRX008047;DRR008919;DRZ000344;DRZ001729;DRZ011694;DRZ013079
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|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000988,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000034,CL:0000037,CL:0002092,CL:0001024
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|fonse_treatment_closure=
|fonse_treatment_closure=
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|has_quality=
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|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD133%252b%2520stem%2520cells%2520-%2520adult%2520bone%2520marrow%2520derived%252c%2520pool1.CNhs12552.12224-129F1.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD133%252b%2520stem%2520cells%2520-%2520adult%2520bone%2520marrow%2520derived%252c%2520pool1.CNhs12552.12224-129F1.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/CD133%252b%2520stem%2520cells%2520-%2520adult%2520bone%2520marrow%2520derived%252c%2520pool1.CNhs12552.12224-129F1.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/CD133%252b%2520stem%2520cells%2520-%2520adult%2520bone%2520marrow%2520derived%252c%2520pool1.CNhs12552.12224-129F1.hg38.nobarcode.ctss.bed.gz
|id=FF:12224-129F1
|id=FF:12224-129F1
|is_a=EFO:0002091;;FF:0000020
|is_a=EFO:0002091;;FF:0000020
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|library_id=CNhs12552
|library_id=CNhs12552
|library_id_phase_based=2:CNhs12552
|library_id_phase_based=2:CNhs12552
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12224
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12224
|name=CD133+ stem cells - adult bone marrow derived, pool1
|name=CD133+ stem cells - adult bone marrow derived, pool1
|namespace=FANTOM5
|namespace=FANTOM5
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|profile_rnaseq=
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|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 92: Line 101:
|top_motifs=MYB:2.23733672757;DMAP1_NCOR{1,2}_SMARC:2.06042414542;POU2F1..3:1.91931746039;ELF1,2,4:1.84624818301;E2F1..5:1.72879687523;STAT1,3:1.64207007668;CREB1:1.57165818867;RUNX1..3:1.46559334508;SPIB:1.45591852756;FOX{I1,J2}:1.39385881567;ATF4:1.3492886003;HIF1A:1.29054949087;ELK1,4_GABP{A,B1}:1.28311883248;ALX1:1.2493716601;YY1:1.18519941466;NANOG{mouse}:1.17999400442;NFY{A,B,C}:1.16265434695;TLX2:1.16264325625;RFX1:1.13245079358;ATF5_CREB3:1.12175533041;RFX2..5_RFXANK_RFXAP:1.11962496518;CDX1,2,4:1.06765483296;ETS1,2:1.0234023634;GATA6:1.02298506527;PBX1:1.00916474012;SPI1:0.946233997613;PAX2:0.944779876692;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.919340621521;IRF1,2:0.914682841071;BREu{core}:0.885886297908;RXR{A,B,G}:0.858055319774;NFKB1_REL_RELA:0.771161204911;NANOG:0.717539481682;RBPJ:0.715595610258;FOXN1:0.704525335393;ZNF143:0.682352124858;FOX{D1,D2}:0.664424383055;XBP1:0.63135375121;NFIL3:0.599462895574;GFI1:0.520196353722;NRF1:0.502529160331;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.499560546797;FOXP3:0.481768877891;bHLH_family:0.45133688414;OCT4_SOX2{dimer}:0.448286924562;NR5A1,2:0.444149624176;SOX2:0.431559705298;PAX5:0.430322174527;FOXQ1:0.429510310004;HBP1_HMGB_SSRP1_UBTF:0.428548720646;FOXA2:0.414742483408;FOX{F1,F2,J1}:0.408205118081;SOX{8,9,10}:0.404387694009;PAX8:0.376509972223;TGIF1:0.372336403694;ATF2:0.368413028342;SREBF1,2:0.360578820904;BPTF:0.352483304739;ARID5B:0.342339609042;MYOD1:0.312455369836;RORA:0.310571750703;VSX1,2:0.305941297535;MEF2{A,B,C,D}:0.273846705042;MYBL2:0.269724908934;NKX6-1,2:0.240572459195;DBP:0.228650714285;EP300:0.19648920348;HAND1,2:0.191180095641;FOXP1:0.118983254467;FOXO1,3,4:0.108647781403;TBP:0.0863434601622;HES1:0.0810609676644;CEBPA,B_DDIT3:0.0712124066916;NKX2-3_NKX2-5:0.0711944552897;POU5F1:0.0632974146405;SOX5:0.0426252241642;IRF7:0.0351288003335;T:0.0326733720832;CUX2:0.00210522461813;JUN:-0.00516229636233;AR:-0.013976935885;PAX6:-0.0499691269041;HLF:-0.0575540701779;HSF1,2:-0.0716690838044;ZEB1:-0.0953597898081;NFATC1..3:-0.11731385049;NFIX:-0.117543789742;EN1,2:-0.119846173321;POU3F1..4:-0.159406463092;GCM1,2:-0.165066089929;NFE2:-0.167998760639;FOSL2:-0.180433862199;NR6A1:-0.184340163983;IKZF2:-0.212539394866;TAL1_TCF{3,4,12}:-0.232830373655;FOS_FOS{B,L1}_JUN{B,D}:-0.233811538333;BACH2:-0.244232099439;PRRX1,2:-0.24906068817;RXRA_VDR{dimer}:-0.250423370785;GZF1:-0.276118436637;TBX4,5:-0.280512630422;SOX17:-0.28174022358;LEF1_TCF7_TCF7L1,2:-0.289568963808;STAT5{A,B}:-0.303790109397;MZF1:-0.305111620737;LMO2:-0.312811603748;NHLH1,2:-0.337554077911;HMX1:-0.341848984971;HOX{A6,A7,B6,B7}:-0.355436965814;HIC1:-0.355798081055;SRF:-0.372198859684;PDX1:-0.397144904218;NKX2-2,8:-0.404430257965;PAX3,7:-0.4131749547;HNF1A:-0.434824633289;HNF4A_NR2F1,2:-0.45529891844;NKX3-1:-0.455838243774;CRX:-0.45947137233;REST:-0.479738224613;PAX4:-0.48310092127;EGR1..3:-0.490933255734;AHR_ARNT_ARNT2:-0.494175546986;ESR1:-0.495272571621;PATZ1:-0.499748733244;SNAI1..3:-0.513966163121;NFE2L2:-0.523796937469;ZNF238:-0.54022102735;ZFP161:-0.542756244342;SP1:-0.544032054824;PITX1..3:-0.547247959604;STAT2,4,6:-0.559790668866;AIRE:-0.57381510812;ATF6:-0.578532672361;TFAP2{A,C}:-0.606390341306;TEF:-0.607450665141;MYFfamily:-0.617500091023;HOXA9_MEIS1:-0.629099509146;ZNF148:-0.646553402636;MAZ:-0.660112764612;ESRRA:-0.666995759116;TOPORS:-0.689617352412;EBF1:-0.692966412367;NKX2-1,4:-0.699309146024;TFDP1:-0.702684327972;MAFB:-0.709055359062;POU1F1:-0.709386296336;MTF1:-0.728277203068;FOXL1:-0.748707929487;MTE{core}:-0.749073128473;HOX{A4,D4}:-0.75231031115;PPARG:-0.775912911341;TFAP2B:-0.790537275243;GTF2I:-0.851069367029;HOX{A5,B5}:-0.854299330971;LHX3,4:-0.941361234877;TFAP4:-0.945085836983;ZBTB16:-0.948149450117;ZNF384:-0.95429627136;ALX4:-0.965562800204;EVI1:-0.969425032193;ZNF423:-0.978448980015;GLI1..3:-0.979250238783;PRDM1:-0.984863804566;MED-1{core}:-1.00864070432;ONECUT1,2:-1.04686272966;CDC5L:-1.06599528618;GTF2A1,2:-1.0715514682;ZBTB6:-1.09379492829;FOXD3:-1.09659301481;ZIC1..3:-1.10145331163;TP53:-1.11542741195;IKZF1:-1.16843258565;XCPE1{core}:-1.18755501646;FOXM1:-1.19254875788;TEAD1:-1.22053596833;TLX1..3_NFIC{dimer}:-1.2721841346;KLF4:-1.29112574924;HMGA1,2:-1.29767219849;NFE2L1:-1.31661789085;POU6F1:-1.41844620681;GFI1B:-1.43232532369;ADNP_IRX_SIX_ZHX:-1.51193971225;UFEwm:-1.54098417412;GATA4:-1.54155195968;RREB1:-1.56235183012;PAX1,9:-1.58260022432;SMAD1..7,9:-1.66411115288;TFCP2:-1.8510795727;NR1H4:-1.85180705908;NR3C1:-2.08120161208;SPZ1:-2.10670731981;NKX3-2:-2.11472380139
|top_motifs=MYB:2.23733672757;DMAP1_NCOR{1,2}_SMARC:2.06042414542;POU2F1..3:1.91931746039;ELF1,2,4:1.84624818301;E2F1..5:1.72879687523;STAT1,3:1.64207007668;CREB1:1.57165818867;RUNX1..3:1.46559334508;SPIB:1.45591852756;FOX{I1,J2}:1.39385881567;ATF4:1.3492886003;HIF1A:1.29054949087;ELK1,4_GABP{A,B1}:1.28311883248;ALX1:1.2493716601;YY1:1.18519941466;NANOG{mouse}:1.17999400442;NFY{A,B,C}:1.16265434695;TLX2:1.16264325625;RFX1:1.13245079358;ATF5_CREB3:1.12175533041;RFX2..5_RFXANK_RFXAP:1.11962496518;CDX1,2,4:1.06765483296;ETS1,2:1.0234023634;GATA6:1.02298506527;PBX1:1.00916474012;SPI1:0.946233997613;PAX2:0.944779876692;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.919340621521;IRF1,2:0.914682841071;BREu{core}:0.885886297908;RXR{A,B,G}:0.858055319774;NFKB1_REL_RELA:0.771161204911;NANOG:0.717539481682;RBPJ:0.715595610258;FOXN1:0.704525335393;ZNF143:0.682352124858;FOX{D1,D2}:0.664424383055;XBP1:0.63135375121;NFIL3:0.599462895574;GFI1:0.520196353722;NRF1:0.502529160331;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.499560546797;FOXP3:0.481768877891;bHLH_family:0.45133688414;OCT4_SOX2{dimer}:0.448286924562;NR5A1,2:0.444149624176;SOX2:0.431559705298;PAX5:0.430322174527;FOXQ1:0.429510310004;HBP1_HMGB_SSRP1_UBTF:0.428548720646;FOXA2:0.414742483408;FOX{F1,F2,J1}:0.408205118081;SOX{8,9,10}:0.404387694009;PAX8:0.376509972223;TGIF1:0.372336403694;ATF2:0.368413028342;SREBF1,2:0.360578820904;BPTF:0.352483304739;ARID5B:0.342339609042;MYOD1:0.312455369836;RORA:0.310571750703;VSX1,2:0.305941297535;MEF2{A,B,C,D}:0.273846705042;MYBL2:0.269724908934;NKX6-1,2:0.240572459195;DBP:0.228650714285;EP300:0.19648920348;HAND1,2:0.191180095641;FOXP1:0.118983254467;FOXO1,3,4:0.108647781403;TBP:0.0863434601622;HES1:0.0810609676644;CEBPA,B_DDIT3:0.0712124066916;NKX2-3_NKX2-5:0.0711944552897;POU5F1:0.0632974146405;SOX5:0.0426252241642;IRF7:0.0351288003335;T:0.0326733720832;CUX2:0.00210522461813;JUN:-0.00516229636233;AR:-0.013976935885;PAX6:-0.0499691269041;HLF:-0.0575540701779;HSF1,2:-0.0716690838044;ZEB1:-0.0953597898081;NFATC1..3:-0.11731385049;NFIX:-0.117543789742;EN1,2:-0.119846173321;POU3F1..4:-0.159406463092;GCM1,2:-0.165066089929;NFE2:-0.167998760639;FOSL2:-0.180433862199;NR6A1:-0.184340163983;IKZF2:-0.212539394866;TAL1_TCF{3,4,12}:-0.232830373655;FOS_FOS{B,L1}_JUN{B,D}:-0.233811538333;BACH2:-0.244232099439;PRRX1,2:-0.24906068817;RXRA_VDR{dimer}:-0.250423370785;GZF1:-0.276118436637;TBX4,5:-0.280512630422;SOX17:-0.28174022358;LEF1_TCF7_TCF7L1,2:-0.289568963808;STAT5{A,B}:-0.303790109397;MZF1:-0.305111620737;LMO2:-0.312811603748;NHLH1,2:-0.337554077911;HMX1:-0.341848984971;HOX{A6,A7,B6,B7}:-0.355436965814;HIC1:-0.355798081055;SRF:-0.372198859684;PDX1:-0.397144904218;NKX2-2,8:-0.404430257965;PAX3,7:-0.4131749547;HNF1A:-0.434824633289;HNF4A_NR2F1,2:-0.45529891844;NKX3-1:-0.455838243774;CRX:-0.45947137233;REST:-0.479738224613;PAX4:-0.48310092127;EGR1..3:-0.490933255734;AHR_ARNT_ARNT2:-0.494175546986;ESR1:-0.495272571621;PATZ1:-0.499748733244;SNAI1..3:-0.513966163121;NFE2L2:-0.523796937469;ZNF238:-0.54022102735;ZFP161:-0.542756244342;SP1:-0.544032054824;PITX1..3:-0.547247959604;STAT2,4,6:-0.559790668866;AIRE:-0.57381510812;ATF6:-0.578532672361;TFAP2{A,C}:-0.606390341306;TEF:-0.607450665141;MYFfamily:-0.617500091023;HOXA9_MEIS1:-0.629099509146;ZNF148:-0.646553402636;MAZ:-0.660112764612;ESRRA:-0.666995759116;TOPORS:-0.689617352412;EBF1:-0.692966412367;NKX2-1,4:-0.699309146024;TFDP1:-0.702684327972;MAFB:-0.709055359062;POU1F1:-0.709386296336;MTF1:-0.728277203068;FOXL1:-0.748707929487;MTE{core}:-0.749073128473;HOX{A4,D4}:-0.75231031115;PPARG:-0.775912911341;TFAP2B:-0.790537275243;GTF2I:-0.851069367029;HOX{A5,B5}:-0.854299330971;LHX3,4:-0.941361234877;TFAP4:-0.945085836983;ZBTB16:-0.948149450117;ZNF384:-0.95429627136;ALX4:-0.965562800204;EVI1:-0.969425032193;ZNF423:-0.978448980015;GLI1..3:-0.979250238783;PRDM1:-0.984863804566;MED-1{core}:-1.00864070432;ONECUT1,2:-1.04686272966;CDC5L:-1.06599528618;GTF2A1,2:-1.0715514682;ZBTB6:-1.09379492829;FOXD3:-1.09659301481;ZIC1..3:-1.10145331163;TP53:-1.11542741195;IKZF1:-1.16843258565;XCPE1{core}:-1.18755501646;FOXM1:-1.19254875788;TEAD1:-1.22053596833;TLX1..3_NFIC{dimer}:-1.2721841346;KLF4:-1.29112574924;HMGA1,2:-1.29767219849;NFE2L1:-1.31661789085;POU6F1:-1.41844620681;GFI1B:-1.43232532369;ADNP_IRX_SIX_ZHX:-1.51193971225;UFEwm:-1.54098417412;GATA4:-1.54155195968;RREB1:-1.56235183012;PAX1,9:-1.58260022432;SMAD1..7,9:-1.66411115288;TFCP2:-1.8510795727;NR1H4:-1.85180705908;NR3C1:-2.08120161208;SPZ1:-2.10670731981;NKX3-2:-2.11472380139
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12224-129F1;search_select_hide=table117:FF:12224-129F1
}}
}}

Latest revision as of 18:35, 4 June 2020

Name:CD133+ stem cells - adult bone marrow derived, pool1
Species:Human (Homo sapiens)
Library ID:CNhs12552
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuebone marrow
dev stageNA
sexNA
ageNA
cell typestem cell
cell lineNA
companyStem cell technologies
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typeNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005606
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12552 CAGE DRX008047 DRR008919
Accession ID Hg19

Library idBAMCTSS
CNhs12552 DRZ000344 DRZ001729
Accession ID Hg38

Library idBAMCTSS
CNhs12552 DRZ011694 DRZ013079
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.156
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.31
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
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C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12552

Jaspar motifP-value
MA0002.20.0246
MA0003.10.566
MA0004.10.178
MA0006.10.214
MA0007.10.391
MA0009.10.66
MA0014.10.523
MA0017.10.655
MA0018.21.74579e-6
MA0019.10.584
MA0024.13.94436e-6
MA0025.11.63364e-6
MA0027.10.129
MA0028.12.41121e-8
MA0029.10.686
MA0030.10.0852
MA0031.10.26
MA0035.20.07
MA0038.10.949
MA0039.20.676
MA0040.10.122
MA0041.10.978
MA0042.10.233
MA0043.13.00419e-14
MA0046.10.49
MA0047.20.865
MA0048.10.24
MA0050.18.9108e-9
MA0051.14.05108e-6
MA0052.10.146
MA0055.10.067
MA0057.10.711
MA0058.10.0269
MA0059.10.0553
MA0060.12.9298e-5
MA0061.10.0022
MA0062.24.40944e-16
MA0065.20.299
MA0066.10.247
MA0067.10.00101
MA0068.11.27324e-4
MA0069.10.0946
MA0070.10.689
MA0071.10.805
MA0072.10.907
MA0073.10.393
MA0074.10.286
MA0076.11.84262e-9
MA0077.10.923
MA0078.10.958
MA0079.20.212
MA0080.22.2943e-12
MA0081.13.95565e-5
MA0083.10.0481
MA0084.10.921
MA0087.10.402
MA0088.10.0716
MA0090.11.59393e-4
MA0091.10.696
MA0092.10.169
MA0093.10.119
MA0099.20.052
MA0100.12.56085e-5
MA0101.10.00135
MA0102.21.84045e-5
MA0103.10.197
MA0104.21.46067e-4
MA0105.10.0143
MA0106.10.0584
MA0107.10.00742
MA0108.20.299
MA0111.10.632
MA0112.20.0847
MA0113.10.3
MA0114.10.681
MA0115.10.968
MA0116.10.0934
MA0117.10.382
MA0119.10.0897
MA0122.10.256
MA0124.10.853
MA0125.10.937
MA0131.10.00514
MA0135.10.404
MA0136.17.52428e-23
MA0137.20.275
MA0138.20.299
MA0139.10.571
MA0140.10.0932
MA0141.10.6
MA0142.10.787
MA0143.10.73
MA0144.10.689
MA0145.10.014
MA0146.10.108
MA0147.17.36389e-4
MA0148.10.447
MA0149.10.662
MA0150.10.934
MA0152.10.176
MA0153.10.0514
MA0154.10.479
MA0155.10.854
MA0156.13.82345e-16
MA0157.10.659
MA0159.10.384
MA0160.10.514
MA0162.10.873
MA0163.18.50027e-6
MA0164.10.587
MA0258.10.102
MA0259.10.0828



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12552

Novel motifP-value
10.499
100.118
1000.741
1010.795
1020.726
1030.626
1040.579
1050.638
1060.23
1070.00174
1080.124
1090.482
110.895
1100.932
1110.322
1120.434
1130.8
1140.312
1150.252
1160.594
1170.021
1180.161
1190.0435
120.412
1200.643
1210.336
1220.675
1230.341
1240.847
1250.355
1260.292
1270.644
1280.183
1290.0539
130.0666
1300.551
1310.211
1320.0512
1330.0721
1340.35
1350.395
1360.039
1370.0378
1380.401
1390.188
140.818
1400.0443
1410.892
1420.792
1430.398
1440.443
1450.389
1460.861
1470.0269
1480.489
1490.063
150.8
1500.761
1510.481
1520.51
1530.248
1540.479
1550.0404
1560.921
1570.0904
1580.988
1590.113
160.218
1600.59
1610.969
1620.097
1630.391
1640.291
1650.347
1660.658
1670.615
1680.507
1690.113
170.176
180.0481
190.105
20.0872
200.18
210.231
220.54
230.00135
240.93
250.287
260.893
270.634
280.703
290.136
30.927
300.146
310.17
320.00577
330.296
340.723
350.753
360.101
370.476
380.374
390.302
40.815
400.289
410.835
420.563
430.23
440.423
450.205
460.359
470.732
480.843
490.371
50.426
500.842
510.628
520.246
530.916
540.208
550.294
560.463
570.472
580.826
590.394
60.996
600.464
610.344
620.783
630.246
640.911
650.042
660.755
670.595
680.884
690.22
70.396
700.00689
710.79
720.617
730.603
740.493
750.0771
760.172
770.0267
780.73
790.183
80.287
800.673
810.64
820.317
830.00263
840.205
850.00818
860.251
870.08
880.449
890.0161
90.613
900.736
910.474
920.0145
930.905
940.71
955.64854e-4
960.75
970.754
980.935
990.00188



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12552


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
0000037 (hematopoietic stem cell)
0002092 (bone marrow cell)
0001024 (CD34-positive, CD38-negative hematopoietic stem cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002371 (bone marrow)
0001474 (bone element)
0002384 (connective tissue)
0000479 (tissue)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0004765 (skeletal element)
0010317 (germ layer / neural crest derived structure)
0002204 (musculoskeletal system)
0001434 (skeletal system)
0002390 (hematopoietic system)
0002193 (hemolymphoid system)
0002405 (immune system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000027 (human CD133-positive hematopoeitic stem cell sample)
0000021 (hematopoietic stem cell sample)
0000001 (sample)
0000020 (human CD133-positive progenitor cell- bone marrow derived sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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