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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005226
|DRA_sample_Accession=CAGE@SAMD00005226
|accession_numbers=CAGE;DRX008049;DRR008921;DRZ000346;DRZ001731
|accession_numbers=CAGE;DRX008049;DRR008921;DRZ000346;DRZ001731;DRZ011696;DRZ013081
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000875,CL:0002396
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000875,CL:0002396
Line 54: Line 54:
|microRNAs=
|microRNAs=
|microRNAs_nn=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#cage;sample;11790
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11790
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#cage;sample;11790
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11790
|name=CD14-CD16+ Monocytes, donor1
|name=CD14-CD16+ Monocytes, donor1
|namespace=
|namespace=
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|profile_rnaseq=
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang=en&db=human&roku_valid=1&rk[]=&order_key=score
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 101: Line 101:
|top_motifs=SPI1:2.46882602174;HMX1:2.35197452653;SPIB:2.24215881052;NANOG{mouse}:2.12266699343;HES1:2.01957094943;IRF1,2:1.97697678393;NFIL3:1.92407679916;ETS1,2:1.89779047285;CREB1:1.71227606758;ATF5_CREB3:1.70372385498;DMAP1_NCOR{1,2}_SMARC:1.69173682372;FOX{I1,J2}:1.6418614782;PAX2:1.57621510659;IRF7:1.50911112457;FOXO1,3,4:1.46444726554;TGIF1:1.45932039874;ELF1,2,4:1.44344989224;FOXN1:1.43972219788;SREBF1,2:1.35780557035;EP300:1.31850041441;RUNX1..3:1.31788352509;RFX2..5_RFXANK_RFXAP:1.2782372304;ESRRA:1.25430535661;ATF4:1.20705515453;MAFB:1.05397000039;FOX{F1,F2,J1}:1.01109821426;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.969165606413;FOX{D1,D2}:0.794248076154;ZNF148:0.762021257672;NR6A1:0.757122210347;GLI1..3:0.751752302207;NFKB1_REL_RELA:0.748766771211;TLX2:0.724776118066;NR5A1,2:0.713822829131;T:0.706567891599;FOXA2:0.705670516578;HIF1A:0.670332093207;JUN:0.665105093206;POU5F1:0.657844994581;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.62580841222;PAX3,7:0.614999328371;NKX2-2,8:0.610960594891;ALX1:0.598734832074;CEBPA,B_DDIT3:0.584940582456;ELK1,4_GABP{A,B1}:0.562079439036;FOXP1:0.499331752237;TAL1_TCF{3,4,12}:0.492160600595;FOXP3:0.460454520841;ATF2:0.449899862646;HBP1_HMGB_SSRP1_UBTF:0.373492636826;ESR1:0.367917992839;RXRA_VDR{dimer}:0.355625167018;FOSL2:0.354389037963;FOXQ1:0.314604045035;HLF:0.311107109723;PAX8:0.299566454609;OCT4_SOX2{dimer}:0.288656505661;BPTF:0.284762838548;ATF6:0.284078200784;MEF2{A,B,C,D}:0.237130817019;TOPORS:0.212707034387;TFCP2:0.20780821931;RFX1:0.200231757367;EBF1:0.182389357581;CRX:0.162999325014;BACH2:0.143872114395;GATA6:0.11739363134;ALX4:0.0930014315836;HMGA1,2:0.0915651312425;PAX4:0.0654208746914;POU2F1..3:0.0583696302672;TFAP4:0.0542539756893;STAT2,4,6:0.03261299731;NFIX:0.0180448488085;NR1H4:0.0148973785475;RORA:0.00412787350547;RBPJ:-0.00171624091078;FOS_FOS{B,L1}_JUN{B,D}:-0.0041915988264;HNF4A_NR2F1,2:-0.010568548921;CDX1,2,4:-0.0109090422297;HOX{A5,B5}:-0.0138852878064;NFE2L2:-0.0222485272897;PITX1..3:-0.0322599594639;EN1,2:-0.0545443109546;IKZF2:-0.0658969679261;PBX1:-0.085099078371;NFE2:-0.10522049154;MYB:-0.191568271801;XBP1:-0.197099942413;PDX1:-0.202903476367;NANOG:-0.204927511844;POU1F1:-0.216783197286;VSX1,2:-0.280570274605;SOX2:-0.289703769693;GATA4:-0.296286899761;HOXA9_MEIS1:-0.311187494165;AR:-0.312506239825;AHR_ARNT_ARNT2:-0.32412022997;AIRE:-0.333258541026;MYOD1:-0.336776708303;NFE2L1:-0.339036164929;ZBTB16:-0.360715585923;GZF1:-0.362618075234;SOX{8,9,10}:-0.366851351944;PPARG:-0.369443433502;FOXL1:-0.396120766862;PRRX1,2:-0.396351969504;NHLH1,2:-0.413345650794;NKX2-3_NKX2-5:-0.47354716055;CUX2:-0.480202277975;FOXD3:-0.54160820078;ONECUT1,2:-0.554102067945;SRF:-0.584262173182;BREu{core}:-0.586404311815;HOX{A6,A7,B6,B7}:-0.599580474768;STAT1,3:-0.60691165831;DBP:-0.61945880049;HOX{A4,D4}:-0.626700033801;MTF1:-0.6558111848;HNF1A:-0.658512672823;REST:-0.676388457148;MYFfamily:-0.677428500722;PRDM1:-0.684667576672;HSF1,2:-0.694306408403;NFY{A,B,C}:-0.696780156217;EGR1..3:-0.708947570896;ADNP_IRX_SIX_ZHX:-0.708995995181;SOX5:-0.712357985191;TFAP2{A,C}:-0.729582740044;PAX1,9:-0.739803760674;ZEB1:-0.800373592759;PAX5:-0.80603252703;E2F1..5:-0.831819562317;ZFP161:-0.84028850457;SP1:-0.857477338011;PAX6:-0.87950569301;STAT5{A,B}:-0.894287376169;TFAP2B:-0.910486058237;PATZ1:-0.931183704901;HAND1,2:-0.93364769638;YY1:-0.936939321784;ZNF238:-0.951353498203;TBP:-0.987340894443;LHX3,4:-0.988849368478;LEF1_TCF7_TCF7L1,2:-0.999322503567;ARID5B:-1.06560720342;NKX2-1,4:-1.08332805806;NKX6-1,2:-1.08424157375;RREB1:-1.09206655059;KLF4:-1.0973132298;NKX3-1:-1.0982078724;ZNF384:-1.09891307576;GFI1:-1.13434655586;SPZ1:-1.14013590286;RXR{A,B,G}:-1.15081025759;HIC1:-1.1530009665;SMAD1..7,9:-1.15523159782;TLX1..3_NFIC{dimer}:-1.18418904138;TP53:-1.18496173333;GFI1B:-1.21431641975;MTE{core}:-1.23404544621;SNAI1..3:-1.24350243172;MZF1:-1.24578161874;NRF1:-1.26504381433;LMO2:-1.26738301271;XCPE1{core}:-1.27633264361;ZIC1..3:-1.28620022434;NKX3-2:-1.28898619637;MED-1{core}:-1.29052578358;TEF:-1.30053789044;NR3C1:-1.30228290132;ZNF423:-1.32622242441;GTF2I:-1.34339787295;CDC5L:-1.37857899283;MYBL2:-1.41006852191;ZNF143:-1.41105671334;IKZF1:-1.43171328588;GCM1,2:-1.43803436385;ZBTB6:-1.4555354087;MAZ:-1.48510634688;POU6F1:-1.48666206939;bHLH_family:-1.50709858844;GTF2A1,2:-1.51409727057;EVI1:-1.52643422498;NFATC1..3:-1.54101390977;UFEwm:-1.55624007824;TEAD1:-1.55625755575;TFDP1:-1.62871253372;FOXM1:-1.75545824014;TBX4,5:-1.9318498385;SOX17:-2.22073654216;POU3F1..4:-2.95802425254
|top_motifs=SPI1:2.46882602174;HMX1:2.35197452653;SPIB:2.24215881052;NANOG{mouse}:2.12266699343;HES1:2.01957094943;IRF1,2:1.97697678393;NFIL3:1.92407679916;ETS1,2:1.89779047285;CREB1:1.71227606758;ATF5_CREB3:1.70372385498;DMAP1_NCOR{1,2}_SMARC:1.69173682372;FOX{I1,J2}:1.6418614782;PAX2:1.57621510659;IRF7:1.50911112457;FOXO1,3,4:1.46444726554;TGIF1:1.45932039874;ELF1,2,4:1.44344989224;FOXN1:1.43972219788;SREBF1,2:1.35780557035;EP300:1.31850041441;RUNX1..3:1.31788352509;RFX2..5_RFXANK_RFXAP:1.2782372304;ESRRA:1.25430535661;ATF4:1.20705515453;MAFB:1.05397000039;FOX{F1,F2,J1}:1.01109821426;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.969165606413;FOX{D1,D2}:0.794248076154;ZNF148:0.762021257672;NR6A1:0.757122210347;GLI1..3:0.751752302207;NFKB1_REL_RELA:0.748766771211;TLX2:0.724776118066;NR5A1,2:0.713822829131;T:0.706567891599;FOXA2:0.705670516578;HIF1A:0.670332093207;JUN:0.665105093206;POU5F1:0.657844994581;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.62580841222;PAX3,7:0.614999328371;NKX2-2,8:0.610960594891;ALX1:0.598734832074;CEBPA,B_DDIT3:0.584940582456;ELK1,4_GABP{A,B1}:0.562079439036;FOXP1:0.499331752237;TAL1_TCF{3,4,12}:0.492160600595;FOXP3:0.460454520841;ATF2:0.449899862646;HBP1_HMGB_SSRP1_UBTF:0.373492636826;ESR1:0.367917992839;RXRA_VDR{dimer}:0.355625167018;FOSL2:0.354389037963;FOXQ1:0.314604045035;HLF:0.311107109723;PAX8:0.299566454609;OCT4_SOX2{dimer}:0.288656505661;BPTF:0.284762838548;ATF6:0.284078200784;MEF2{A,B,C,D}:0.237130817019;TOPORS:0.212707034387;TFCP2:0.20780821931;RFX1:0.200231757367;EBF1:0.182389357581;CRX:0.162999325014;BACH2:0.143872114395;GATA6:0.11739363134;ALX4:0.0930014315836;HMGA1,2:0.0915651312425;PAX4:0.0654208746914;POU2F1..3:0.0583696302672;TFAP4:0.0542539756893;STAT2,4,6:0.03261299731;NFIX:0.0180448488085;NR1H4:0.0148973785475;RORA:0.00412787350547;RBPJ:-0.00171624091078;FOS_FOS{B,L1}_JUN{B,D}:-0.0041915988264;HNF4A_NR2F1,2:-0.010568548921;CDX1,2,4:-0.0109090422297;HOX{A5,B5}:-0.0138852878064;NFE2L2:-0.0222485272897;PITX1..3:-0.0322599594639;EN1,2:-0.0545443109546;IKZF2:-0.0658969679261;PBX1:-0.085099078371;NFE2:-0.10522049154;MYB:-0.191568271801;XBP1:-0.197099942413;PDX1:-0.202903476367;NANOG:-0.204927511844;POU1F1:-0.216783197286;VSX1,2:-0.280570274605;SOX2:-0.289703769693;GATA4:-0.296286899761;HOXA9_MEIS1:-0.311187494165;AR:-0.312506239825;AHR_ARNT_ARNT2:-0.32412022997;AIRE:-0.333258541026;MYOD1:-0.336776708303;NFE2L1:-0.339036164929;ZBTB16:-0.360715585923;GZF1:-0.362618075234;SOX{8,9,10}:-0.366851351944;PPARG:-0.369443433502;FOXL1:-0.396120766862;PRRX1,2:-0.396351969504;NHLH1,2:-0.413345650794;NKX2-3_NKX2-5:-0.47354716055;CUX2:-0.480202277975;FOXD3:-0.54160820078;ONECUT1,2:-0.554102067945;SRF:-0.584262173182;BREu{core}:-0.586404311815;HOX{A6,A7,B6,B7}:-0.599580474768;STAT1,3:-0.60691165831;DBP:-0.61945880049;HOX{A4,D4}:-0.626700033801;MTF1:-0.6558111848;HNF1A:-0.658512672823;REST:-0.676388457148;MYFfamily:-0.677428500722;PRDM1:-0.684667576672;HSF1,2:-0.694306408403;NFY{A,B,C}:-0.696780156217;EGR1..3:-0.708947570896;ADNP_IRX_SIX_ZHX:-0.708995995181;SOX5:-0.712357985191;TFAP2{A,C}:-0.729582740044;PAX1,9:-0.739803760674;ZEB1:-0.800373592759;PAX5:-0.80603252703;E2F1..5:-0.831819562317;ZFP161:-0.84028850457;SP1:-0.857477338011;PAX6:-0.87950569301;STAT5{A,B}:-0.894287376169;TFAP2B:-0.910486058237;PATZ1:-0.931183704901;HAND1,2:-0.93364769638;YY1:-0.936939321784;ZNF238:-0.951353498203;TBP:-0.987340894443;LHX3,4:-0.988849368478;LEF1_TCF7_TCF7L1,2:-0.999322503567;ARID5B:-1.06560720342;NKX2-1,4:-1.08332805806;NKX6-1,2:-1.08424157375;RREB1:-1.09206655059;KLF4:-1.0973132298;NKX3-1:-1.0982078724;ZNF384:-1.09891307576;GFI1:-1.13434655586;SPZ1:-1.14013590286;RXR{A,B,G}:-1.15081025759;HIC1:-1.1530009665;SMAD1..7,9:-1.15523159782;TLX1..3_NFIC{dimer}:-1.18418904138;TP53:-1.18496173333;GFI1B:-1.21431641975;MTE{core}:-1.23404544621;SNAI1..3:-1.24350243172;MZF1:-1.24578161874;NRF1:-1.26504381433;LMO2:-1.26738301271;XCPE1{core}:-1.27633264361;ZIC1..3:-1.28620022434;NKX3-2:-1.28898619637;MED-1{core}:-1.29052578358;TEF:-1.30053789044;NR3C1:-1.30228290132;ZNF423:-1.32622242441;GTF2I:-1.34339787295;CDC5L:-1.37857899283;MYBL2:-1.41006852191;ZNF143:-1.41105671334;IKZF1:-1.43171328588;GCM1,2:-1.43803436385;ZBTB6:-1.4555354087;MAZ:-1.48510634688;POU6F1:-1.48666206939;bHLH_family:-1.50709858844;GTF2A1,2:-1.51409727057;EVI1:-1.52643422498;NFATC1..3:-1.54101390977;UFEwm:-1.55624007824;TEAD1:-1.55625755575;TFDP1:-1.62871253372;FOXM1:-1.75545824014;TBX4,5:-1.9318498385;SOX17:-2.22073654216;POU3F1..4:-2.95802425254
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11790-124B8;search_select_hide=table117:FF:11790-124B8
}}
}}

Latest revision as of 18:20, 4 June 2020

Name:CD14-CD16+ Monocytes, donor1
Species:Human (Homo sapiens)
Library ID:CNhs13229
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueblood
dev stageNA
sexmale
age25
cell typemonocyte
cell lineNA
companyNA
collaborationMichael Rehli (University of Regensberg)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number9
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005226
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs13229 CAGE DRX008049 DRR008921
Accession ID Hg19

Library idBAMCTSS
CNhs13229 DRZ000346 DRZ001731
Accession ID Hg38

Library idBAMCTSS
CNhs13229 DRZ011696 DRZ013081
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.137
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C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole1.098
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13229

Jaspar motifP-value
MA0002.25.51085e-8
MA0003.10.0853
MA0004.10.318
MA0006.10.952
MA0007.10.84
MA0009.10.427
MA0014.10.418
MA0017.10.013
MA0018.24.91465e-4
MA0019.10.57
MA0024.10.0193
MA0025.10.0074
MA0027.10.724
MA0028.10.118
MA0029.10.472
MA0030.10.11
MA0031.10.253
MA0035.20.907
MA0038.10.247
MA0039.20.127
MA0040.10.202
MA0041.10.614
MA0042.10.421
MA0043.12.59921e-4
MA0046.10.116
MA0047.20.0756
MA0048.10.63
MA0050.12.45535e-12
MA0051.15.5711e-6
MA0052.10.122
MA0055.10.723
MA0057.10.863
MA0058.10.153
MA0059.10.462
MA0060.10.00162
MA0061.10.00128
MA0062.22.60688e-7
MA0065.20.0133
MA0066.10.21
MA0067.12.29636e-4
MA0068.10.777
MA0069.10.621
MA0070.10.018
MA0071.10.0881
MA0072.10.336
MA0073.10.386
MA0074.10.41
MA0076.10.0816
MA0077.10.0693
MA0078.10.897
MA0079.20.814
MA0080.29.58035e-16
MA0081.13.03495e-5
MA0083.10.461
MA0084.10.567
MA0087.10.454
MA0088.10.563
MA0090.10.0181
MA0091.10.627
MA0092.10.454
MA0093.10.356
MA0099.20.00724
MA0100.10.917
MA0101.10.0101
MA0102.21.4117e-4
MA0103.10.21
MA0104.20.367
MA0105.12.02042e-5
MA0106.10.532
MA0107.10.00371
MA0108.27.94471e-6
MA0111.10.433
MA0112.20.00116
MA0113.10.65
MA0114.10.0735
MA0115.10.41
MA0116.14.45939e-5
MA0117.10.242
MA0119.10.39
MA0122.10.326
MA0124.10.089
MA0125.10.376
MA0131.10.537
MA0135.10.3
MA0136.11.20795e-20
MA0137.20.721
MA0138.20.985
MA0139.10.764
MA0140.10.939
MA0141.10.0189
MA0142.10.605
MA0143.10.869
MA0144.10.652
MA0145.10.242
MA0146.10.0179
MA0147.10.492
MA0148.10.387
MA0149.10.116
MA0150.10.00274
MA0152.10.0655
MA0153.10.0246
MA0154.10.00193
MA0155.10.933
MA0156.13.06182e-13
MA0157.10.205
MA0159.10.0784
MA0160.10.00201
MA0162.10.721
MA0163.13.00528e-10
MA0164.10.881
MA0258.10.0132
MA0259.10.815



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13229

Novel motifP-value
10.144
100.0335
1000.913
1010.41
1020.568
1030.41
1040.564
1050.0813
1060.0117
1070.911
1080.73
1090.028
110.235
1100.194
1110.0861
1120.287
1130.432
1140.0178
1150.368
1160.764
1170.0172
1180.0997
1190.246
120.186
1200.6
1210.749
1220.682
1230.00165
1240.261
1250.253
1260.173
1270.509
1280.0997
1290.874
130.0715
1300.308
1310.622
1320.036
1330.15
1340.663
1350.315
1360.657
1378.08814e-5
1380.341
1390.00878
140.397
1400.247
1410.805
1420.972
1430.0544
1440.938
1450.443
1460.985
1470.475
1480.0339
1490.615
150.128
1500.589
1510.222
1520.205
1530.647
1540.975
1550.102
1560.943
1570.732
1580.105
1590.158
160.596
1600.713
1610.505
1620.353
1630.258
1640.191
1650.106
1660.275
1670.128
1680.533
1690.015
170.325
180.228
190.365
20.93
200.343
210.491
220.209
230.316
240.265
250.146
260.0405
270.671
280.501
290.111
30.0954
300.335
310.639
320.703
330.192
340.526
350.21
360.0378
370.0528
380.501
390.867
40.898
400.0917
410.0416
420.259
430.0743
440.879
450.898
460.18
470.471
480.484
490.0874
50.0785
500.968
510.396
520.381
530.252
540.411
550.396
560.832
570.978
580.0416
590.157
60.812
600.0487
610.165
620.0212
630.542
640.436
650.349
660.39
670.493
680.524
690.688
70.157
700.0374
710.0398
720.314
730.114
740.411
750.0296
760.203
770.636
780.249
790.753
80.508
800.255
810.235
820.181
830.675
840.55
850.0679
860.0827
870.233
880.617
890.888
90.316
900.0995
910.463
920.569
930.394
940.0464
950.00829
960.3
970.955
980.0976
990.0816



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs13229


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000576 (monocyte)
0000875 (non-classical monocyte)
0002396 (CD14-low, CD16-positive monocyte)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0011100 (human CD14-CD16-positive Monocytes sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
CL:0002057 (CD14-positive, CD16-negative classical monocyte)

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