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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005750
|DRA_sample_Accession=CAGE@SAMD00005750
|accession_numbers=CAGE;DRX008460;DRR009332;DRZ000757;DRZ002142
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005750
|accession_numbers=CAGE;DRX008460;DRR009332;DRZ000757;DRZ002142;DRZ012107;DRZ013492
|accession_numbers_RNASeq=sRNA-Seq;DRX037210;DRR041576;DRZ007218
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001134,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002036,UBERON:0002385,UBERON:0010317,UBERON:0001015,UBERON:0002204,UBERON:0000383
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|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000055,CL:0000003,CL:0000723,CL:0000035,CL:0000548,CL:0000680,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000211,CL:0000255,CL:0000188,CL:0000034,CL:0000594
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|profile_rnaseq=
|profile_rnaseq=
|profile_srnaseq=SRhi10013,,,
|profile_srnaseq=SRhi10013,,,
|refex=http://refex.dbcls.jp/genelist.php?lang=en&db=human&roku_valid=1&rk[]=&order_key=score
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 80: Line 82:
|rna_tube_id=118D2
|rna_tube_id=118D2
|rna_weight_ug=10
|rna_weight_ug=10
|rnaseq_library_id=SRhi10013.GATCAG
|sample_age=fetal
|sample_age=fetal
|sample_category=primary cells
|sample_category=primary cells
Line 103: Line 106:
|top_motifs=TFDP1:1.24972140142;RXR{A,B,G}:1.23007519601;POU3F1..4:1.11693181593;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.09942111418;E2F1..5:1.07561739196;GFI1:1.07319685105;EN1,2:1.05602059888;GZF1:0.979460534106;SRF:0.954681442821;TBP:0.908802992284;NR3C1:0.873843674113;HES1:0.842439053052;TFAP4:0.826860022097;GFI1B:0.819053203456;NKX3-1:0.808605800492;HSF1,2:0.770704904381;UFEwm:0.747212977558;NFY{A,B,C}:0.738652676081;ZNF143:0.719802490703;HOX{A5,B5}:0.714201520635;MEF2{A,B,C,D}:0.712381955024;TEAD1:0.700484748311;ALX4:0.694928729954;HOX{A4,D4}:0.667730800138;NKX2-1,4:0.651921944996;AIRE:0.632126613315;TAL1_TCF{3,4,12}:0.608301888108;KLF4:0.596272731639;RXRA_VDR{dimer}:0.518665170908;ZNF238:0.507782217451;NR1H4:0.505382966698;POU1F1:0.502917451016;NKX2-2,8:0.474679358822;MYBL2:0.465949094091;TLX1..3_NFIC{dimer}:0.463098744533;MZF1:0.453777849455;GATA4:0.45321961382;GTF2A1,2:0.44926917677;NHLH1,2:0.447924339623;YY1:0.444316644311;NRF1:0.424591345596;GLI1..3:0.421771692768;NANOG{mouse}:0.411416275854;PBX1:0.398025309768;ESR1:0.392372927627;SOX17:0.390525236927;PAX5:0.384049813406;SPZ1:0.381910954695;EGR1..3:0.380561325173;TOPORS:0.36822322883;CDC5L:0.355591066284;PAX4:0.353719474421;PAX3,7:0.351894721935;XCPE1{core}:0.34918482185;STAT5{A,B}:0.347883557483;HIC1:0.339162370024;MYB:0.338922562256;RBPJ:0.330802606642;ONECUT1,2:0.323277093343;PAX1,9:0.302326926349;GCM1,2:0.297601280789;TFAP2{A,C}:0.275802182932;ZIC1..3:0.273366677929;PATZ1:0.258778115961;ELK1,4_GABP{A,B1}:0.251268682745;ZNF384:0.248450038372;TFCP2:0.220291828997;PPARG:0.19149471679;NR5A1,2:0.187161389092;GTF2I:0.183719601658;MYOD1:0.18245179346;TGIF1:0.160749814483;IKZF1:0.156429908766;BACH2:0.145929149659;MAZ:0.144832743972;TFAP2B:0.141179028075;IKZF2:0.130421513279;PAX8:0.127241562303;EBF1:0.12577204138;SP1:0.1186560983;NFATC1..3:0.114859576666;MTE{core}:0.111810653844;STAT1,3:0.1114658079;ZFP161:0.109529967711;EVI1:0.107908887885;PITX1..3:0.106291511955;CDX1,2,4:0.0779434576437;NFE2L2:0.0748791035371;NFIX:0.0683738483053;LEF1_TCF7_TCF7L1,2:0.0501810425826;PRDM1:0.0500121038768;TEF:0.0379131964551;FOXL1:0.0372261463241;T:0.030301743224;NR6A1:0.0138231918418;AHR_ARNT_ARNT2:9.01021928773e-06;CREB1:-0.00182750095301;FOS_FOS{B,L1}_JUN{B,D}:-0.00275270505074;TP53:-0.0179424904601;TBX4,5:-0.0309455923405;FOXP1:-0.0451545142795;ZBTB16:-0.0530439121366;HLF:-0.0561380438733;ZNF423:-0.0685297839276;HNF1A:-0.0752791462402;POU6F1:-0.0784849390684;FOSL2:-0.0791986441137;RUNX1..3:-0.0804325100316;NKX2-3_NKX2-5:-0.0818467431186;ATF6:-0.0854278838449;ZBTB6:-0.0879151204949;BREu{core}:-0.0930104717486;AR:-0.0930735183424;FOXD3:-0.0957836548203;ZNF148:-0.0972594044884;PRRX1,2:-0.10371370846;ELF1,2,4:-0.110314248346;POU2F1..3:-0.113532074682;ALX1:-0.139464196229;FOXM1:-0.141548208767;SOX{8,9,10}:-0.145628863407;ADNP_IRX_SIX_ZHX:-0.146518620728;RREB1:-0.147859186575;SOX5:-0.153237149334;HNF4A_NR2F1,2:-0.159265054985;PDX1:-0.160141843195;HBP1_HMGB_SSRP1_UBTF:-0.170015874336;XBP1:-0.171227504685;MYFfamily:-0.175605493736;NKX6-1,2:-0.194899104272;RFX1:-0.205960824633;JUN:-0.207125692977;MTF1:-0.210536425961;MED-1{core}:-0.21074958847;RFX2..5_RFXANK_RFXAP:-0.224033453982;NFKB1_REL_RELA:-0.230655177467;NFE2L1:-0.231892292295;HOXA9_MEIS1:-0.267775807617;STAT2,4,6:-0.27109047069;MAFB:-0.271263564187;PAX2:-0.287924319501;DMAP1_NCOR{1,2}_SMARC:-0.290308140935;SMAD1..7,9:-0.294140290454;CUX2:-0.30658276685;bHLH_family:-0.306952113205;PAX6:-0.312177467018;NFE2:-0.313292143845;NKX3-2:-0.316439559137;SPI1:-0.328295680602;POU5F1:-0.347715295266;CEBPA,B_DDIT3:-0.361045165254;LMO2:-0.36325751431;ESRRA:-0.366773481686;LHX3,4:-0.375700624344;REST:-0.402210602516;IRF7:-0.411534349728;SPIB:-0.413812091744;ATF2:-0.414237274878;OCT4_SOX2{dimer}:-0.42626664088;ATF5_CREB3:-0.435174217891;NFIL3:-0.440896041594;ETS1,2:-0.442173912563;FOXA2:-0.442706243094;HAND1,2:-0.449727569066;IRF1,2:-0.460691196123;HIF1A:-0.478431909876;TLX2:-0.485899957405;HMGA1,2:-0.487675902785;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.48938444394;SOX2:-0.525164501598;FOXP3:-0.53207485619;ATF4:-0.54593693708;CRX:-0.549301929784;SREBF1,2:-0.558062472041;FOXO1,3,4:-0.610491830697;HOX{A6,A7,B6,B7}:-0.649287157748;SNAI1..3:-0.660220204841;HMX1:-0.672252168409;FOXQ1:-0.710072134353;GATA6:-0.734129084682;FOXN1:-0.745270755634;BPTF:-0.746877798709;DBP:-0.773065627095;ARID5B:-0.794776087427;RORA:-0.91722061478;EP300:-0.989180341916;ZEB1:-0.99424068383;NANOG:-0.999251701215;VSX1,2:-1.00245293146;FOX{F1,F2,J1}:-1.11135091366;FOX{D1,D2}:-1.15923521983;FOX{I1,J2}:-1.25600697082
|top_motifs=TFDP1:1.24972140142;RXR{A,B,G}:1.23007519601;POU3F1..4:1.11693181593;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.09942111418;E2F1..5:1.07561739196;GFI1:1.07319685105;EN1,2:1.05602059888;GZF1:0.979460534106;SRF:0.954681442821;TBP:0.908802992284;NR3C1:0.873843674113;HES1:0.842439053052;TFAP4:0.826860022097;GFI1B:0.819053203456;NKX3-1:0.808605800492;HSF1,2:0.770704904381;UFEwm:0.747212977558;NFY{A,B,C}:0.738652676081;ZNF143:0.719802490703;HOX{A5,B5}:0.714201520635;MEF2{A,B,C,D}:0.712381955024;TEAD1:0.700484748311;ALX4:0.694928729954;HOX{A4,D4}:0.667730800138;NKX2-1,4:0.651921944996;AIRE:0.632126613315;TAL1_TCF{3,4,12}:0.608301888108;KLF4:0.596272731639;RXRA_VDR{dimer}:0.518665170908;ZNF238:0.507782217451;NR1H4:0.505382966698;POU1F1:0.502917451016;NKX2-2,8:0.474679358822;MYBL2:0.465949094091;TLX1..3_NFIC{dimer}:0.463098744533;MZF1:0.453777849455;GATA4:0.45321961382;GTF2A1,2:0.44926917677;NHLH1,2:0.447924339623;YY1:0.444316644311;NRF1:0.424591345596;GLI1..3:0.421771692768;NANOG{mouse}:0.411416275854;PBX1:0.398025309768;ESR1:0.392372927627;SOX17:0.390525236927;PAX5:0.384049813406;SPZ1:0.381910954695;EGR1..3:0.380561325173;TOPORS:0.36822322883;CDC5L:0.355591066284;PAX4:0.353719474421;PAX3,7:0.351894721935;XCPE1{core}:0.34918482185;STAT5{A,B}:0.347883557483;HIC1:0.339162370024;MYB:0.338922562256;RBPJ:0.330802606642;ONECUT1,2:0.323277093343;PAX1,9:0.302326926349;GCM1,2:0.297601280789;TFAP2{A,C}:0.275802182932;ZIC1..3:0.273366677929;PATZ1:0.258778115961;ELK1,4_GABP{A,B1}:0.251268682745;ZNF384:0.248450038372;TFCP2:0.220291828997;PPARG:0.19149471679;NR5A1,2:0.187161389092;GTF2I:0.183719601658;MYOD1:0.18245179346;TGIF1:0.160749814483;IKZF1:0.156429908766;BACH2:0.145929149659;MAZ:0.144832743972;TFAP2B:0.141179028075;IKZF2:0.130421513279;PAX8:0.127241562303;EBF1:0.12577204138;SP1:0.1186560983;NFATC1..3:0.114859576666;MTE{core}:0.111810653844;STAT1,3:0.1114658079;ZFP161:0.109529967711;EVI1:0.107908887885;PITX1..3:0.106291511955;CDX1,2,4:0.0779434576437;NFE2L2:0.0748791035371;NFIX:0.0683738483053;LEF1_TCF7_TCF7L1,2:0.0501810425826;PRDM1:0.0500121038768;TEF:0.0379131964551;FOXL1:0.0372261463241;T:0.030301743224;NR6A1:0.0138231918418;AHR_ARNT_ARNT2:9.01021928773e-06;CREB1:-0.00182750095301;FOS_FOS{B,L1}_JUN{B,D}:-0.00275270505074;TP53:-0.0179424904601;TBX4,5:-0.0309455923405;FOXP1:-0.0451545142795;ZBTB16:-0.0530439121366;HLF:-0.0561380438733;ZNF423:-0.0685297839276;HNF1A:-0.0752791462402;POU6F1:-0.0784849390684;FOSL2:-0.0791986441137;RUNX1..3:-0.0804325100316;NKX2-3_NKX2-5:-0.0818467431186;ATF6:-0.0854278838449;ZBTB6:-0.0879151204949;BREu{core}:-0.0930104717486;AR:-0.0930735183424;FOXD3:-0.0957836548203;ZNF148:-0.0972594044884;PRRX1,2:-0.10371370846;ELF1,2,4:-0.110314248346;POU2F1..3:-0.113532074682;ALX1:-0.139464196229;FOXM1:-0.141548208767;SOX{8,9,10}:-0.145628863407;ADNP_IRX_SIX_ZHX:-0.146518620728;RREB1:-0.147859186575;SOX5:-0.153237149334;HNF4A_NR2F1,2:-0.159265054985;PDX1:-0.160141843195;HBP1_HMGB_SSRP1_UBTF:-0.170015874336;XBP1:-0.171227504685;MYFfamily:-0.175605493736;NKX6-1,2:-0.194899104272;RFX1:-0.205960824633;JUN:-0.207125692977;MTF1:-0.210536425961;MED-1{core}:-0.21074958847;RFX2..5_RFXANK_RFXAP:-0.224033453982;NFKB1_REL_RELA:-0.230655177467;NFE2L1:-0.231892292295;HOXA9_MEIS1:-0.267775807617;STAT2,4,6:-0.27109047069;MAFB:-0.271263564187;PAX2:-0.287924319501;DMAP1_NCOR{1,2}_SMARC:-0.290308140935;SMAD1..7,9:-0.294140290454;CUX2:-0.30658276685;bHLH_family:-0.306952113205;PAX6:-0.312177467018;NFE2:-0.313292143845;NKX3-2:-0.316439559137;SPI1:-0.328295680602;POU5F1:-0.347715295266;CEBPA,B_DDIT3:-0.361045165254;LMO2:-0.36325751431;ESRRA:-0.366773481686;LHX3,4:-0.375700624344;REST:-0.402210602516;IRF7:-0.411534349728;SPIB:-0.413812091744;ATF2:-0.414237274878;OCT4_SOX2{dimer}:-0.42626664088;ATF5_CREB3:-0.435174217891;NFIL3:-0.440896041594;ETS1,2:-0.442173912563;FOXA2:-0.442706243094;HAND1,2:-0.449727569066;IRF1,2:-0.460691196123;HIF1A:-0.478431909876;TLX2:-0.485899957405;HMGA1,2:-0.487675902785;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.48938444394;SOX2:-0.525164501598;FOXP3:-0.53207485619;ATF4:-0.54593693708;CRX:-0.549301929784;SREBF1,2:-0.558062472041;FOXO1,3,4:-0.610491830697;HOX{A6,A7,B6,B7}:-0.649287157748;SNAI1..3:-0.660220204841;HMX1:-0.672252168409;FOXQ1:-0.710072134353;GATA6:-0.734129084682;FOXN1:-0.745270755634;BPTF:-0.746877798709;DBP:-0.773065627095;ARID5B:-0.794776087427;RORA:-0.91722061478;EP300:-0.989180341916;ZEB1:-0.99424068383;NANOG:-0.999251701215;VSX1,2:-1.00245293146;FOX{F1,F2,J1}:-1.11135091366;FOX{D1,D2}:-1.15923521983;FOX{I1,J2}:-1.25600697082
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11397-118D2;search_select_hide=table117:FF:11397-118D2
}}
}}

Latest revision as of 17:57, 4 June 2020

Name:Skeletal Muscle Satellite Cells, donor3
Species:Human (Homo sapiens)
Library ID:CNhs12008
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueskeletal muscle
dev stagefetus
sexunknown
agefetal
cell typesatellite cell, skeletal muscle
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number1142
catalog numberSC3515
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005750
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12008 CAGE DRX008460 DRR009332
Accession ID Hg19

Library idBAMCTSS
CNhs12008 DRZ000757 DRZ002142
Accession ID Hg38

Library idBAMCTSS
CNhs12008 DRZ012107 DRZ013492
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005750
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10013.GATCAG sRNA-Seq DRX037210 DRR041576
Accession ID Hg19

Library idBAMCTSS
SRhi10013.GATCAG DRZ007218


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-7.601071e-4
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.471
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD194.379832e-4
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0.0684
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0.0278
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.0548
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0.0684
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.0989
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0961
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.135
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.0355
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.06
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.411
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0161
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.137
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.226
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.0123
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.49
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.0355
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.505
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.2
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.0355
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.226
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.214
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.439
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.471
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0.141
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0.0355
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.256
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.571
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12008

Jaspar motifP-value
MA0002.20.014
MA0003.10.503
MA0004.10.851
MA0006.10.834
MA0007.10.935
MA0009.10.349
MA0014.10.768
MA0017.10.129
MA0018.20.263
MA0019.10.669
MA0024.13.04102e-9
MA0025.10.0318
MA0027.10.748
MA0028.10.153
MA0029.10.409
MA0030.10.00164
MA0031.10.00168
MA0035.20.00356
MA0038.10.0187
MA0039.20.529
MA0040.10.105
MA0041.10.301
MA0042.10.309
MA0043.10.0367
MA0046.10.0821
MA0047.20.0108
MA0048.10.0893
MA0050.11.04555e-5
MA0051.14.94445e-5
MA0052.10.00525
MA0055.10.23
MA0057.10.455
MA0058.10.774
MA0059.10.718
MA0060.13.07841e-6
MA0061.10.00121
MA0062.20.255
MA0065.20.00644
MA0066.10.82
MA0067.10.0276
MA0068.10.0803
MA0069.10.728
MA0070.10.0863
MA0071.10.745
MA0072.10.174
MA0073.10.86
MA0074.10.59
MA0076.10.273
MA0077.10.46
MA0078.10.892
MA0079.20.918
MA0080.22.70394e-11
MA0081.10.052
MA0083.10.0317
MA0084.10.178
MA0087.10.961
MA0088.10.018
MA0090.10.0273
MA0091.10.379
MA0092.10.38
MA0093.10.705
MA0099.20.00465
MA0100.10.099
MA0101.10.0463
MA0102.20.006
MA0103.17.40395e-5
MA0104.20.556
MA0105.15.36169e-6
MA0106.10.919
MA0107.10.00632
MA0108.26.62708e-11
MA0111.10.509
MA0112.20.067
MA0113.10.887
MA0114.10.0708
MA0115.10.566
MA0116.10.00193
MA0117.10.338
MA0119.10.9
MA0122.10.489
MA0124.10.509
MA0125.10.984
MA0131.10.425
MA0135.10.388
MA0136.19.29117e-10
MA0137.20.25
MA0138.20.324
MA0139.10.00333
MA0140.10.058
MA0141.10.684
MA0142.10.176
MA0143.10.876
MA0144.10.0929
MA0145.10.288
MA0146.10.487
MA0147.10.727
MA0148.10.00177
MA0149.10.39
MA0150.10.00846
MA0152.10.0378
MA0153.10.787
MA0154.10.00355
MA0155.10.769
MA0156.15.6275e-5
MA0157.10.00705
MA0159.10.0094
MA0160.10.0493
MA0162.10.719
MA0163.10.031
MA0164.10.972
MA0258.10.0128
MA0259.10.665



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12008

Novel motifP-value
10.586
100.62
1000.82
1010.256
1020.515
1030.216
1040.787
1050.0658
1060.00107
1070.52
1080.533
1090.29
110.585
1100.464
1110.438
1120.0436
1130.899
1140.0422
1150.759
1160.468
1170.636
1180.204
1190.319
120.547
1200.151
1210.489
1220.025
1230.00306
1240.0142
1250.519
1260.968
1270.466
1280.0789
1290.0681
130.875
1300.0528
1310.965
1320.915
1330.749
1340.247
1350.264
1360.643
1370.126
1380.0662
1390.0033
140.286
1400.125
1410.292
1420.948
1430.359
1440.834
1450.68
1460.857
1470.34
1480.17
1490.593
150.127
1500.833
1510.316
1520.341
1530.38
1540.875
1550.00638
1560.0819
1570.0943
1580.0275
1590.369
160.872
1600.558
1610.67
1620.351
1630.704
1640.989
1650.373
1660.928
1670.0916
1680.29
1690.0469
170.338
180.53
190.957
20.807
200.778
210.26
220.715
230.0294
240.663
250.444
260.972
270.368
280.306
290.719
30.361
300.851
310.426
320.0663
330.842
340.754
350.136
360.0446
370.524
380.373
390.656
40.237
400.0793
410.00765
420.405
430.3
440.313
450.153
460.251
470.544
480.755
490.117
50.125
500.479
510.447
520.402
530.131
540.493
550.365
560.66
570.326
580.0856
590.338
60.878
600.0371
610.703
620.077
630.518
640.398
650.254
660.413
670.584
680.472
690.519
70.32
700.00112
710.385
720.171
730.794
740.634
750.351
760.618
770.423
780.289
790.149
80.95
800.0991
810.542
820.00968
830.49
840.787
850.00462
860.305
870.352
880.951
890.261
90.881
900.276
910.324
920.113
930.892
940.167
950.879
960.27
970.596
980.0982
990.0077



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12008


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000055 (non-terminally differentiated cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000035 (single fate stem cell)
0000548 (animal cell)
0000680 (muscle precursor cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000188 (cell of skeletal muscle)
0000034 (stem cell)
0000594 (skeletal muscle satellite cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001134 (skeletal muscle tissue)
0000479 (tissue)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002036 (striated muscle tissue)
0002385 (muscle tissue)
0010317 (germ layer / neural crest derived structure)
0001015 (musculature)
0002204 (musculoskeletal system)
0000383 (musculature of body)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000165 (human skeletal muscle satellite cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)

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