FFCP PHASE1:Hg19::chr12:53320245..53320259,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr12:53320245..53320259,- to FFCP PHASE1:Hg19::chr12:53320245..53320259,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3856 | |EntrezGene=3856 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6446 | |HGNC=6446 | ||
|TSSclassifier=strong | |||
|UniProt=F8VXB4,Q7L4M3 | |UniProt=F8VXB4,Q7L4M3 | ||
|association_with_transcript=0bp_to_ENST00000552150,uc009zmk.1_5end | |||
|cluster_id=chr12:53320245..53320259,- | |||
|description=CAGE_peak_4_at_KRT8_5end | |||
|id=chr12:53320245..53320259,- | |||
|ontology_enrichment_celltype=CL:0000066!1.71e-27!254;CL:0000077!8.05e-16!19;CL:1000507!2.90e-07!12;CL:1000494!2.90e-07!12;CL:0000076!6.83e-07!62;CL:1000449!7.37e-07!16 | |||
|ontology_enrichment_celltype_v019=CL:0000077;1.21e-26;19!CL:1000507;4.36e-11;10!CL:1000494;4.36e-11;10!CL:1000497;4.51e-10;17!CL:0002518;4.51e-10;17!CL:1000449;5.38e-10;15!CL:0002681;1.30e-08;12!CL:0002584;1.30e-08;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000077,8.66e-27,19;CL:0000066,1.68e-26,253;CL:1000507,3.09e-11,10;CL:1000494,3.09e-11,10;CL:1000449,4.04e-10,15;CL:1000497,4.06e-10,17;CL:0002518,4.06e-10,17;CL:0002681,1.06e-08,12;CL:0002584,1.06e-08,12;CL:0000213,2.93e-07,58;CL:0000215,2.93e-07,58;CL:0000076,4.72e-07,63 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!2.35e-24!106;DOID:0050687!2.63e-22!143;DOID:162!2.28e-19!235;DOID:14566!8.32e-19!239;DOID:299!2.01e-09!25 | |||
|ontology_enrichment_disease_v019=DOID:299;1.18e-15;25!DOID:170;3.31e-09;6 | |||
|ontology_enrichment_disease_v019_2=DOID:305,4.08e-18,106;DOID:162,3.72e-16,235;DOID:14566,4.44e-16,239;DOID:0050687,5.28e-16,143;DOID:299,6.89e-16,25;DOID:170,2.36e-09,6 | |||
|ontology_enrichment_uberon=UBERON:0003104!4.99e-12!238;UBERON:0009142!4.99e-12!238;UBERON:0004921!1.12e-11!129;UBERON:0004185!1.12e-11!129;UBERON:0000466!1.55e-11!126;UBERON:0001007!5.16e-11!155;UBERON:0001555!5.16e-11!155;UBERON:0007026!5.16e-11!155;UBERON:0004119!1.10e-10!169;UBERON:0000925!1.10e-10!169;UBERON:0006595!1.10e-10!169;UBERON:0000077!2.50e-10!130;UBERON:0003886!5.30e-10!63;UBERON:0000464!8.28e-10!104;UBERON:0005177!1.48e-09!107;UBERON:0005409!3.31e-09!35;UBERON:0002100!4.27e-09!216;UBERON:0000160!4.42e-09!27;UBERON:0000058!1.03e-08!26;UBERON:0001048!1.44e-08!168;UBERON:0002553!2.01e-08!70;UBERON:0001041!5.34e-08!98;UBERON:0000481!1.58e-07!347;UBERON:0003914!1.63e-07!118;UBERON:0005631!2.03e-07!14;UBERON:0000158!2.03e-07!14;UBERON:0009569!2.65e-07!113;UBERON:0009773!2.90e-07!12;UBERON:0001231!2.90e-07!12;UBERON:0004810!2.90e-07!12;UBERON:0006555!5.23e-07!17;UBERON:0005103!5.23e-07!17;UBERON:0000083!5.23e-07!17;UBERON:0009201!5.23e-07!17;UBERON:0004819!5.23e-07!17;UBERON:0006553!5.23e-07!17;UBERON:0003074!5.23e-07!17;UBERON:0003060!5.23e-07!17;UBERON:0008947!7.13e-07!38;UBERON:0003258!7.13e-07!38;UBERON:0004211!7.37e-07!16;UBERON:0001285!7.37e-07!16;UBERON:0007684!7.37e-07!16;UBERON:0003220!7.37e-07!16;UBERON:0004208!7.37e-07!16 | |||
|ontology_enrichment_uberon_v019=UBERON:0004211;4.36e-11;10!UBERON:0009773;4.36e-11;10!UBERON:0001231;4.36e-11;10!UBERON:0004810;4.36e-11;10!UBERON:0001851;2.49e-10;15!UBERON:0006555;5.38e-10;15!UBERON:0004819;5.38e-10;15!UBERON:0001285;5.38e-10;15!UBERON:0007684;5.38e-10;15!UBERON:0002113;3.68e-09;24!UBERON:0011143;3.68e-09;24!UBERON:0001264;1.05e-08;10!UBERON:0001225;1.30e-08;12!UBERON:0008987;1.30e-08;12!UBERON:0000489;5.59e-07;29 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005177,3.42e-13,101;UBERON:0004810,3.09e-11,10;UBERON:0001851,2.09e-10,15;UBERON:0004211,4.04e-10,15;UBERON:0009773,4.04e-10,15;UBERON:0001231,4.04e-10,15;UBERON:0001285,4.04e-10,15;UBERON:0007684,4.04e-10,15;UBERON:0004208,4.04e-10,15;UBERON:0002100,1.89e-09,199;UBERON:0006555,2.56e-09,16;UBERON:0004819,2.56e-09,16;UBERON:0001264,5.81e-09,10;UBERON:0001225,1.06e-08,12;UBERON:0008987,1.06e-08,12;UBERON:0002113,3.26e-08,26;UBERON:0003918,3.26e-08,26;UBERON:0011143,3.26e-08,26;UBERON:0005095,3.26e-08,26;UBERON:0007687,3.26e-08,26;UBERON:0005172,3.27e-08,54;UBERON:0005173,3.27e-08,54;UBERON:0005631,7.21e-08,14;UBERON:0000158,7.21e-08,14;UBERON:0009569,8.80e-08,112;UBERON:0006554,1.89e-07,47;UBERON:0001008,3.42e-07,48;UBERON:0002417,7.95e-07,60;UBERON:0000916,7.95e-07,60 | |||
|phase1_expression=0.181678379270557,0,0,0,0,0,0,0,0,3.19454117451962,2.79120467188971,0.655324116390517,2.90143676051299,0,0.331397375727916,0,0.602694528023977,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34140171940727,0.895037932904712,0,0,0,0,0,0,1.10864698731282,1.40535657109002,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0.347140501607594,0,0.419499436209906,0,0,0,0,0,0,0,0.24406205754817,0,0,0.357198913136319,1.34717623575702,0.337834441449967,0,0,0,0,0,0,0.993943903390637,1.01304409331664,0.926864265692532,0.860509862246441,0.354668382198357,5.04609840128076,0,2.71334303258876,0,0.134710672069688,0.980771418680752,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.43723628363248,0,0,0,0,0,0,0.794025282120147,0,0.213557388818567,0,0,0,0.515281080091258,0.18611685633159,0.168776332241266,0,0,0,0,0,0.10075209822764,0.339121184620975,0,0.272746120590835,0.286804595389004,0,0,0.116193942869518,0.310983165046111,0,0,0,0,0,0,0,1.30137480043828,0.337169380156203,0.482022059766964,0.661763836394364,1.08939722046203,1.42362371466658,0.674156540800822,0.98110732562673,0.769494313892781,0,0,0.8231480226628,0,0,0,0,0,2.82873408649161,0.171567810298526,0,0,0,0,0,0,1.44331342025273,0.115930404975077,1.6437217193015,0.144366447761074,0,0,3.1608175918371,6.00940313466411,0,0,0,0.93733833986777,0,0.141775097242386,0,0,1.53353071666084,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.07333828582095,0.646358578788889,0,0,0,1.04007436911366,0,0,0,1.28680194292333,0,0.823240336780769,0,1.06617584622764,0.791951872933429,9.34462068884717,6.10073421020206,16.7954625185856,0,0,0,0,0,0,0.144781306667579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.415941723061614,0,0.630809660135739,0.117141414992713,0,0,0,0.664225598535437,2.58116835958384,0,0,0,0,0,0,1.5156378572313,1.66435439510497,2.11673205330776,0,0.153461973288062,0.280660094433074,0.128139149255701,0.511707249066704,0.64341568457443,0,0.771048469013278,0.532685175939381,0.492762936082855,0,0.116210378459959,2.65890789101569,2.6065841139427,0,0.803701137152247,0,0,4.06079651616671,2.46449078734127,3.13739907670742,2.92278449306521,0.211103257785751,0,0,1.29549549661284,0,2.98041081298238,5.01689773854853,1.27438136522519,4.98645605357235,1.79099803777743,0,0,0.256450125116389,4.92021968549559,0.650756789328606,0,0.183138929636687,0,0,0,1.6068392984416,0,0,0.15350367472613,0.137836572484531,0,0,0.0852266274161009,0.0890320356467374,0,0,0,0,0,0.31481234683064,0,0,0,0,0,0.143124886741991,0.372158369359667,0.316379424718726,4.00323407240032,0,0.42793898803392,0.318203247925937,0,0.179872457583315,0.54907405947211,0.471249609382746,1.01091240786658,0,0,0,0,1.05650146756755,0.136499911407986,0.141405431953713,0,0,0,0,0,0,1.42037263873893,2.78841148289775,1.69017361519345,0.286822704408103,0.392996164052485,1.07001315444375,0,0.211107635297664,0,0,0,0,1.34060455107157,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,4.16613877397145,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.33307196799782,0,0.37428108081644,0,0,0,5.96685908293468,2.3874448473769,0.296964680832639,1.53580351049616,0,0,0.333926115068718,0,0,0.398495976502139,0.552567831062295,0,1.63629892003448,0,0,2.60618218327248,4.29650819221462,0,0,0,11.1136990144637,0,0,0,1.5625665665114,0,0,0,1.01701460117107,1.18193840883968,0,0,0,0,0,0,0,0,0,0,0.278847488557207,0.230850775511391,0,0.23056390438806,2.51321404347362,6.08425282763245,1.91400695839152,1.09917112082235,2.13213910407454,0,0,0,0,0,0,0,0,2.3209787098083,1.79556088975062,2.68570835724488,0,3.98104772431402,0.176915129006678,1.83309043480088,0,0,0,0,0,0,0,2.15231080825299,1.94224303627274,0,0,0,0,0,0,2.65861549082874,1.98595173525299,5.33685961292283,8.36307008410712,0,0,2.95051555169723,0.489961987071888,0.783532859223623,0.17472666824203,0.171986032471617,2.70917727609438,2.11959019549938,4.4342346808733,0,0,0,4.11125773940253,0.19871461170299,0,1.56441106187842,0.480952921509202,1.06726497369676,50.3520216146968,2.59362750877391,0,0,0.432164393964449,0.124252535565433,0,25.2781823296922,32.008470971574,0,0.288950589901519,0,0,0,11.6036669183388,0,0,0,0,0.199679000498991,0,0.223171457441873,0,0,0,0.472699093843342,0.659326867049332,0.674035438541849,3.05125192695721,0,0,0,0,0,0,0,0,0,0,0.0788057072991982,0,0.105600336519406,7.53006825197948,1.15149118391667,0,0,6.102444903714,0,1.72844298240254,0,0,0,0.511164065356265,0.906496732161005,0,1.32506888912221,0.129282956361551,0,6.50129983960452,3.52407511158336,0.106787412567695,0,0,0,0,0,0,0,0,0.306345576763462,0,1.41348686625211,0,0,0,0,0,0,0,0.249960815924213,0,0,3.05845565607623,0,0.144921028610825,0.298509605773748,0,0.554805861502613,0,0,0,0,1.20984739010591,0,0,0.159296767163702,0,1.24210365501008,0,0.265841714557995,0.521745061811734,2.25386413495828,5.33127297036314,0.813741466409323,0.181848659202559,4.29642228169954,0.464033759878494,0.796191777397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| ||
|short_description=p4@KRT8 | |||
}} | }} |
Latest revision as of 01:10, 19 September 2015
Short description: | p4@KRT8 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_KRT8_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000552150, uc009zmk.1_5end |
EntrezGene: | KRT8 |
HGNC: | 6446 |
UniProt: | F8VXB4Q7L4M3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesothelial cell | 8.66e-27 | 19 |
epithelial cell | 1.68e-26 | 253 |
kidney tubule cell | 3.09e-11 | 10 |
nephron tubule epithelial cell | 3.09e-11 | 10 |
epithelial cell of nephron | 4.04e-10 | 15 |
kidney cell | 4.06e-10 | 17 |
kidney epithelial cell | 4.06e-10 | 17 |
kidney cortical cell | 1.06e-08 | 12 |
renal cortical epithelial cell | 1.06e-08 | 12 |
lining cell | 2.93e-07 | 58 |
barrier cell | 2.93e-07 | 58 |
squamous epithelial cell | 4.72e-07 | 63 |
Ontology term | p-value | n |
---|---|---|
trunk region element | 3.42e-13 | 101 |
nephron tubule epithelium | 3.09e-11 | 10 |
cortex | 2.09e-10 | 15 |
nephron epithelium | 4.04e-10 | 15 |
renal tubule | 4.04e-10 | 15 |
nephron tubule | 4.04e-10 | 15 |
nephron | 4.04e-10 | 15 |
uriniferous tubule | 4.04e-10 | 15 |
nephrogenic mesenchyme | 4.04e-10 | 15 |
trunk | 1.89e-09 | 199 |
excretory tube | 2.56e-09 | 16 |
kidney epithelium | 2.56e-09 | 16 |
pancreas | 5.81e-09 | 10 |
cortex of kidney | 1.06e-08 | 12 |
renal parenchyma | 1.06e-08 | 12 |
kidney | 3.26e-08 | 26 |
kidney mesenchyme | 3.26e-08 | 26 |
upper urinary tract | 3.26e-08 | 26 |
kidney rudiment | 3.26e-08 | 26 |
kidney field | 3.26e-08 | 26 |
abdomen element | 3.27e-08 | 54 |
abdominal segment element | 3.27e-08 | 54 |
extraembryonic membrane | 7.21e-08 | 14 |
membranous layer | 7.21e-08 | 14 |
subdivision of trunk | 8.80e-08 | 112 |
urinary system structure | 1.89e-07 | 47 |
renal system | 3.42e-07 | 48 |
abdominal segment of trunk | 7.95e-07 | 60 |
abdomen | 7.95e-07 | 60 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 4.08e-18 | 106 |
cancer | 3.72e-16 | 235 |
disease of cellular proliferation | 4.44e-16 | 239 |
cell type cancer | 5.28e-16 | 143 |
adenocarcinoma | 6.89e-16 | 25 |
endocrine gland cancer | 2.36e-09 | 6 |