FFCP PHASE1:Hg19::chr12:57624119..57624158,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr12:57624119..57624158,+ to FFCP PHASE1:Hg19::chr12:57624119..57624158,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6472 | |EntrezGene=6472 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10852 | |HGNC=10852 | ||
|TSSclassifier=strong | |||
|UniProt=B4DLV4,B7Z9F1,G3V5L0,G3V2Y1,G3V4T0,P34897,Q5BJF5 | |UniProt=B4DLV4,B7Z9F1,G3V5L0,G3V2Y1,G3V4T0,P34897,Q5BJF5 | ||
|association_with_transcript=0bp_to_ENST00000393827,ENST00000449049,ENST00000554975,ENST00000555116,ENST00000555773,ENST00000555774,NM_001166357,uc001snj.1,uc001snk.1,uc001snl.2,uc010srh.1,uc010sri.1_5end | |||
|cluster_id=chr12:57624119..57624158,+ | |||
|coexpression_cluster_id=C3305 | |||
|description=CAGE_peak_3_at_SHMT2_5end | |||
|id=chr12:57624119..57624158,+ | |||
|ontology_enrichment_celltype=CL:0000548!1.53e-26!679;CL:0000004!1.53e-26!679;CL:0000255!1.53e-26!679;CL:0000012!1.58e-25!682;CL:0000055!9.57e-16!180;CL:0000144!2.83e-14!625;CL:0000003!3.25e-14!722;CL:0000066!1.58e-13!254;CL:0002321!2.54e-12!248;CL:0000220!6.88e-12!246;CL:0000063!1.74e-10!578;CL:0000057!3.76e-09!75;CL:0002371!2.73e-08!591 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,8.43e-10,250;CL:0000066,3.67e-09,253;CL:0000057,3.33e-07,76;CL:0000223,9.26e-07,58 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:0050687,8.85e-11,143;DOID:14566,1.77e-10,239;DOID:162,3.15e-10,235;DOID:305,2.86e-07,106 | |||
|ontology_enrichment_uberon=UBERON:0000466!6.68e-07!126 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002100,4.45e-07,199 | |||
|phase1_expression=4.54195948176392,2.35510576280081,8.3163098416623,2.00146596706261,2.23480547213644,0.872338524100369,0,3.15859936713415,0.522371256399677,1.72013755551056,4.88460817580699,1.96597234917155,2.90143676051299,0,0.331397375727916,0.672325146451775,0,0.730310090387373,0,2.33930010345897,0.204000691244253,20.3745568960757,0.286235987131057,0.547497700291537,0.753255837568817,0.687720651731561,0.328402357799783,0.708397031823113,0,0,0,0.919421224478927,1.204823675113,8.50434223383612,1.08454080812422,0.568676929949686,0,0,0,0,0,0,0,0,0,0,0,0.822335776043652,0.929119112685311,0,0,0.236482229888585,0,0,0,0,0,0,0,0.641858054152187,1.27867425159808,0,0.398927315243264,0,0,0,1.24564449799115,0.502497330513487,0,0.217188844705117,0,0.736555271975129,1.89877432464531,0,0,0,0,0,0,0,0,0,0,0.546138611262131,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.334372990781356,0,0,0,0,0,0.221533894583621,0.270803863765016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236777252044017,0,0,0,0,0,0,34.0114414503791,10.4817354191524,13.0347856765331,6.37324683427624,8.74814541756209,5.35298357332899,0.0945348171640679,0.443458794925128,0.351339142772504,0.261958150995425,6.9216104775583,3.70784442784429,0.324547393654683,0.174129737299267,0.664789802594326,0,0,0,8.74554592413502,0.860234595106124,2.77712401286075,0.56530794192401,1.25849830862972,1.6507082516404,0.208994966536811,0,0,0.33472061276467,0.402829317109147,0.760272105718513,0.732186172644509,1.10298924103761,1.62028389576352,0.0892997282840798,0.22452937262617,0.900891843866578,4.5994991239765,0.949265659568129,0.916008719652036,0,0,4.79703457356788,8.44852317882041,10.7635934914893,3.17782033951725,11.7603014507014,4.61068896857864,10.6528744027038,19.2148192313469,10.1133694851036,0.933633106199299,36.7760134750248,0.980771418680752,9.68687536927561,5.76175924479999,148.794109214461,0,3.4228309292667,0.149448680551801,3.64046945795671,6.47491777472526,0.842704840213491,2.44985005505872,0.859840221182376,8.16273671288547,3.56400857184616,7.41800787835671,8.19145225744224,38.0867615162606,1.5150250255866,1.00094815897571,0.277064115484183,2.19488810440419,2.45190236639216,4.20666564938471,4.19699077692078,1.25572744982203,7.68806599746843,4.87443372666992,1.50045548042201,2.67936576019941,5.66809188100384,7.07244054060041,0.843881661206331,5.84622030967192,2.01947019395292,4.78659472939957,3.87950536365149,2.13005755509969,2.01504196455281,2.7129694769678,0.386521706326594,0,0,7.07447495551653,5.03613119621644,6.15827897208447,7.77457912615278,13.8776467981596,3.28479623168247,0,1.28648187638577,0,0,0,1.65629520055781,1.51726221070292,0.964044119533928,1.7647035637183,1.96091499683166,1.18635309555548,0.808987848960987,0.392442930250692,0,0,7.01208869017229,0.4115740113314,0,6.33775174109154,16.7080626835196,10.6342183202653,0.441463099414651,4.5505722260952,3.25978839567199,0.329250856225877,31.4724909121335,1.80952150340936,1.20364978706088,230.020663549089,16.6389565644733,0,2.66639931442677,16.0849911103076,0,0.925971025153221,0,0.790204397959275,0.858486162094873,0,0,0,0,0,0.283550194484773,5.1943943167652,3.19697332365358,1.53353071666084,0.985326475791887,0.968532774145487,0,0,0,0.063497894292169,4.96584953225761,0,0,0.308482478109971,0,7.43148724839503,9.30688000066494,8.7192013766656,4.18028229179415,17.7102250588156,21.4593867511129,0,10.1056484302251,2.08014873822732,0,0,0.799266537048298,21.8756330296966,49.3785660906213,7.40916303102692,0.325736184293735,19.54655718084,0,1.50719688529793,0.871533458600294,0.299918973546171,0,0,0,22.2851115607172,27.5668646001873,0,1.44781306667579,0,0.358121926479791,4.03506518376698,0,0,0,1.01637849688985,0,0,0.335032530668698,0.637938751653163,0,0,0,0.49076596687656,0.500170521059677,35.8069831283651,5.19927153827018,8.20773348466944,9.14674007196821,3.63138386477411,15.6491971858414,25.0148254461583,31.0419213877515,9.29915837949611,6.26855173041791,1.04260337361699,16.6430983843329,7.89229874764969,0,0,0,3.94065842880137,9.98612637062982,16.6314661331324,7.69134204238208,3.52962538562544,7.29716245525991,7.68834895534206,8.69902323413396,6.91671860917512,1.48418066444991,0.154209693802656,3.72879623157567,0.574890092096664,0.519254429183621,0.232420756919918,7.97672367304707,0,0.460404944679482,17.796239465514,11.2896524164165,4.45823010862042,12.1823895485001,1.15523005656622,7.84349769176855,0,0.316654886678627,0,0.680374821106063,1.0795795805107,0,1.35473218771926,1.00337954770971,4.07802036872061,9.14183609821597,0.447749509444357,0,0,0,0,21.474974047844,0.206082023295445,0.183138929636687,0.165018999841176,1.14853107599234,0,9.64103579064957,32.6747027827372,0.154048617114644,1.07452572308291,1.10269257987624,8.37877909972534,0.435050081742686,1.02271952899321,24.2167136959126,8.42953068340988,4.42037154939744,0,1.71968227454435,6.04299214086472,4.7221852024596,0,6.46870518369786,2.66153015158511,0,2.96518750566272,12.8812398067792,3.34942532423701,0,0.953150969619124,1.02359116524534,12.8381696410176,4.13664222303718,7.84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| |phase1_expression=4.54195948176392,2.35510576280081,8.3163098416623,2.00146596706261,2.23480547213644,0.872338524100369,0,3.15859936713415,0.522371256399677,1.72013755551056,4.88460817580699,1.96597234917155,2.90143676051299,0,0.331397375727916,0.672325146451775,0,0.730310090387373,0,2.33930010345897,0.204000691244253,20.3745568960757,0.286235987131057,0.547497700291537,0.753255837568817,0.687720651731561,0.328402357799783,0.708397031823113,0,0,0,0.919421224478927,1.204823675113,8.50434223383612,1.08454080812422,0.568676929949686,0,0,0,0,0,0,0,0,0,0,0,0.822335776043652,0.929119112685311,0,0,0.236482229888585,0,0,0,0,0,0,0,0.641858054152187,1.27867425159808,0,0.398927315243264,0,0,0,1.24564449799115,0.502497330513487,0,0.217188844705117,0,0.736555271975129,1.89877432464531,0,0,0,0,0,0,0,0,0,0,0.546138611262131,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.334372990781356,0,0,0,0,0,0.221533894583621,0.270803863765016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236777252044017,0,0,0,0,0,0,34.0114414503791,10.4817354191524,13.0347856765331,6.37324683427624,8.74814541756209,5.35298357332899,0.0945348171640679,0.443458794925128,0.351339142772504,0.261958150995425,6.9216104775583,3.70784442784429,0.324547393654683,0.174129737299267,0.664789802594326,0,0,0,8.74554592413502,0.860234595106124,2.77712401286075,0.56530794192401,1.25849830862972,1.6507082516404,0.208994966536811,0,0,0.33472061276467,0.402829317109147,0.760272105718513,0.732186172644509,1.10298924103761,1.62028389576352,0.0892997282840798,0.22452937262617,0.900891843866578,4.5994991239765,0.949265659568129,0.916008719652036,0,0,4.79703457356788,8.44852317882041,10.7635934914893,3.17782033951725,11.7603014507014,4.61068896857864,10.6528744027038,19.2148192313469,10.1133694851036,0.933633106199299,36.7760134750248,0.980771418680752,9.68687536927561,5.76175924479999,148.794109214461,0,3.4228309292667,0.149448680551801,3.64046945795671,6.47491777472526,0.842704840213491,2.44985005505872,0.859840221182376,8.16273671288547,3.56400857184616,7.41800787835671,8.19145225744224,38.0867615162606,1.5150250255866,1.00094815897571,0.277064115484183,2.19488810440419,2.45190236639216,4.20666564938471,4.19699077692078,1.25572744982203,7.68806599746843,4.87443372666992,1.50045548042201,2.67936576019941,5.66809188100384,7.07244054060041,0.843881661206331,5.84622030967192,2.01947019395292,4.78659472939957,3.87950536365149,2.13005755509969,2.01504196455281,2.7129694769678,0.386521706326594,0,0,7.07447495551653,5.03613119621644,6.15827897208447,7.77457912615278,13.8776467981596,3.28479623168247,0,1.28648187638577,0,0,0,1.65629520055781,1.51726221070292,0.964044119533928,1.7647035637183,1.96091499683166,1.18635309555548,0.808987848960987,0.392442930250692,0,0,7.01208869017229,0.4115740113314,0,6.33775174109154,16.7080626835196,10.6342183202653,0.441463099414651,4.5505722260952,3.25978839567199,0.329250856225877,31.4724909121335,1.80952150340936,1.20364978706088,230.020663549089,16.6389565644733,0,2.66639931442677,16.0849911103076,0,0.925971025153221,0,0.790204397959275,0.858486162094873,0,0,0,0,0,0.283550194484773,5.1943943167652,3.19697332365358,1.53353071666084,0.985326475791887,0.968532774145487,0,0,0,0.063497894292169,4.96584953225761,0,0,0.308482478109971,0,7.43148724839503,9.30688000066494,8.7192013766656,4.18028229179415,17.7102250588156,21.4593867511129,0,10.1056484302251,2.08014873822732,0,0,0.799266537048298,21.8756330296966,49.3785660906213,7.40916303102692,0.325736184293735,19.54655718084,0,1.50719688529793,0.871533458600294,0.299918973546171,0,0,0,22.2851115607172,27.5668646001873,0,1.44781306667579,0,0.358121926479791,4.03506518376698,0,0,0,1.01637849688985,0,0,0.335032530668698,0.637938751653163,0,0,0,0.49076596687656,0.500170521059677,35.8069831283651,5.19927153827018,8.20773348466944,9.14674007196821,3.63138386477411,15.6491971858414,25.0148254461583,31.0419213877515,9.29915837949611,6.26855173041791,1.04260337361699,16.6430983843329,7.89229874764969,0,0,0,3.94065842880137,9.98612637062982,16.6314661331324,7.69134204238208,3.52962538562544,7.29716245525991,7.68834895534206,8.69902323413396,6.91671860917512,1.48418066444991,0.154209693802656,3.72879623157567,0.574890092096664,0.519254429183621,0.232420756919918,7.97672367304707,0,0.460404944679482,17.796239465514,11.2896524164165,4.45823010862042,12.1823895485001,1.15523005656622,7.84349769176855,0,0.316654886678627,0,0.680374821106063,1.0795795805107,0,1.35473218771926,1.00337954770971,4.07802036872061,9.14183609821597,0.447749509444357,0,0,0,0,21.474974047844,0.206082023295445,0.183138929636687,0.165018999841176,1.14853107599234,0,9.64103579064957,32.6747027827372,0.154048617114644,1.07452572308291,1.10269257987624,8.37877909972534,0.435050081742686,1.02271952899321,24.2167136959126,8.42953068340988,4.42037154939744,0,1.71968227454435,6.04299214086472,4.7221852024596,0,6.46870518369786,2.66153015158511,0,2.96518750566272,12.8812398067792,3.34942532423701,0,0.953150969619124,1.02359116524534,12.8381696410176,4.13664222303718,7.84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| ||
|short_description=p3@SHMT2 | |||
}} | }} |
Latest revision as of 13:39, 19 September 2015
Short description: | p3@SHMT2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SHMT2_5end |
Coexpression cluster: | C3305_mesothelioma_Keratocytes_Fibroblast_hepatoma_Trabecular_acute_gastrointestinal |
Association with transcript: | 0bp_to_ENST00000393827, ENST00000449049, ENST00000554975, ENST00000555116, ENST00000555773, ENST00000555774, NM_001166357, uc001snj.1, uc001snk.1, uc001snl.2, uc010srh.1, uc010sri.1_5end |
EntrezGene: | SHMT2 |
HGNC: | 10852 |
UniProt: | B4DLV4B7Z9F1G3V5L0G3V2Y1G3V4T0P34897Q5BJF5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 8.43e-10 | 250 |
epithelial cell | 3.67e-09 | 253 |
fibroblast | 3.33e-07 | 76 |
endodermal cell | 9.26e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
trunk | 4.45e-07 | 199 |
Ontology term | p-value | n |
---|---|---|
cell type cancer | 8.85e-11 | 143 |
disease of cellular proliferation | 1.77e-10 | 239 |
cancer | 3.15e-10 | 235 |
carcinoma | 2.86e-07 | 106 |