FFCP PHASE1:Hg19::chr12:65997532..65997546,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr12:65997532..65997546,- to FFCP PHASE1:Hg19::chr12:65997532..65997546,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr12:65997532..65997546,- | |||
|description=CAGE_peak_at_chr12:65997532..65997546,- | |||
|id=chr12:65997532..65997546,- | |||
|ontology_enrichment_celltype=CL:0002371!1.76e-19!591;CL:0000144!1.50e-18!625;CL:0000057!3.69e-18!75;CL:0000055!4.72e-17!180;CL:0000222!2.74e-15!119;CL:0000220!7.33e-15!246;CL:0000548!1.27e-14!679;CL:0000004!1.27e-14!679;CL:0000255!1.27e-14!679;CL:0002321!1.60e-14!248;CL:0000012!2.58e-14!682;CL:0000115!2.73e-11!35;CL:0002139!4.09e-11!24;CL:0000003!1.84e-10!722;CL:0000071!7.50e-10!18;CL:0002546!7.50e-10!18;CL:0000680!4.64e-09!57;CL:0000056!4.64e-09!57;CL:0000355!4.64e-09!57;CL:0002620!6.14e-09!23;CL:0002078!1.91e-08!44;CL:0000183!2.76e-08!59;CL:0002540!4.62e-08!6;CL:0000359!5.51e-08!32;CL:0000213!1.25e-07!57;CL:0000215!1.25e-07!57;CL:0000187!1.27e-07!54;CL:0000063!2.49e-07!578;CL:0000192!3.05e-07!42;CL:0000514!3.05e-07!42;CL:0002551!3.83e-07!6;CL:0002543!4.72e-07!6 | |||
|ontology_enrichment_celltype_v019=CL:0002540;3.62e-18;6!CL:0002092;1.31e-10;10!CL:0000569;1.91e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0002540,3.51e-18,6;CL:0002092,1.29e-10,10;CL:0000222,3.09e-08,121;CL:0002321,7.54e-08,250;CL:0000569,1.69e-07,4;CL:0000011,1.69e-07,4 | |||
|ontology_enrichment_development_v019=CL:0000011;1.91e-07;4 | |||
|ontology_enrichment_disease=DOID:2394!2.05e-07!14 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002049!1.40e-18!79;UBERON:0007798!1.40e-18!79;UBERON:0000055!3.28e-17!69;UBERON:0000914!4.67e-16!83;UBERON:0002329!4.67e-16!83;UBERON:0003077!4.67e-16!83;UBERON:0003059!4.67e-16!83;UBERON:0007282!4.67e-16!83;UBERON:0009618!4.67e-16!83;UBERON:0007285!4.67e-16!83;UBERON:0004535!3.02e-15!110;UBERON:0001981!8.48e-15!60;UBERON:0007500!8.48e-15!60;UBERON:0004537!8.48e-15!60;UBERON:0006965!8.48e-15!60;UBERON:0004872!1.16e-14!84;UBERON:0001009!2.20e-14!113;UBERON:0000486!1.41e-13!82;UBERON:0003102!8.44e-13!95;UBERON:0001637!8.93e-13!42;UBERON:0003509!8.93e-13!42;UBERON:0004572!8.93e-13!42;UBERON:0005256!2.52e-12!143;UBERON:0003914!1.98e-11!118;UBERON:0004290!2.26e-11!70;UBERON:0000119!3.23e-11!312;UBERON:0000483!1.15e-10!309;UBERON:0001986!7.50e-10!18;UBERON:0004638!7.50e-10!18;UBERON:0004852!7.50e-10!18;UBERON:0000487!8.69e-10!22;UBERON:0000490!1.10e-09!138;UBERON:0000467!2.19e-09!625;UBERON:0000480!2.68e-09!626;UBERON:0004573!5.56e-09!33;UBERON:0004571!5.56e-09!33;UBERON:0006914!5.07e-08!25;UBERON:0001134!6.65e-08!61;UBERON:0002036!6.65e-08!61;UBERON:0003082!6.65e-08!61;UBERON:0002199!8.81e-08!45;UBERON:0002416!8.81e-08!45;UBERON:0002385!2.17e-07!63;UBERON:0001015!2.17e-07!63;UBERON:0000383!2.17e-07!63;UBERON:0000468!5.21e-07!659;UBERON:0003129!5.72e-07!11;UBERON:0002097!6.46e-07!40;UBERON:0002100!9.18e-07!216;UBERON:0001444!9.22e-07!48 | |||
|ontology_enrichment_uberon_v019=UBERON:0002371;1.22e-11;12!UBERON:0001637;8.80e-09;42!UBERON:0003509;8.80e-09;42!UBERON:0004572;8.80e-09;42!UBERON:0007500;1.63e-08;56!UBERON:0001981;1.63e-08;56!UBERON:0004537;1.63e-08;56!UBERON:0000947;3.56e-08;21!UBERON:0010191;3.56e-08;21!UBERON:0001474;2.10e-07;18!UBERON:0001434;3.73e-07;36!UBERON:0004573;5.95e-07;33!UBERON:0004571;5.95e-07;33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001637,5.98e-11,42;UBERON:0003509,5.98e-11,42;UBERON:0004572,5.98e-11,42;UBERON:0004872,6.67e-11,83;UBERON:0007500,7.67e-11,59;UBERON:0001981,7.67e-11,59;UBERON:0004537,7.67e-11,59;UBERON:0006965,7.67e-11,59;UBERON:0000486,1.70e-10,83;UBERON:0000055,3.71e-10,68;UBERON:0002049,2.24e-09,78;UBERON:0007798,2.24e-09,78;UBERON:0007503,4.99e-09,78;UBERON:0000947,5.09e-08,21;UBERON:0010191,5.09e-08,21;UBERON:0002329,5.36e-08,71;UBERON:0003059,5.36e-08,71;UBERON:0007282,5.36e-08,71;UBERON:0004290,5.36e-08,71;UBERON:0009618,5.36e-08,71;UBERON:0004535,5.57e-08,109;UBERON:0003077,7.82e-08,72;UBERON:0007285,7.82e-08,72;UBERON:0007524,1.13e-07,73;UBERON:0001009,1.24e-07,112;UBERON:0004573,2.26e-07,33;UBERON:0004571,2.26e-07,33;UBERON:0000926,3.63e-07,315;UBERON:0004120,3.63e-07,315;UBERON:0006603,3.63e-07,315;UBERON:0003914,4.34e-07,117 | |||
|phase1_expression=0,0,0,0,0,0,0,0.631719873426831,0,0.245733936501509,1.39560233594486,0,0,0.123766352960047,0,0,0.602694528023977,0,0,0.123121058076788,0,0,0,0,0,0,0,0,0,0,0,0,0.30120591877825,2.9580320813343,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.645484683583826,0,0,0,0,0,0,0,0,0,0,0.580418477257168,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189069634328136,0,0.175669571386252,0,0,0.370784442784429,0,0,0,0,0,0,4.57153536943422,0,0.694281003215189,1.13061588384802,0.838998872419812,0.275118041940067,2.29894463190492,0.258416759169329,0.35576626268671,0,0,0.760272105718513,0,0.735326160691737,0,0.446498641420399,0.898117490504679,0.675668882899933,4.5994991239765,2.84779697870439,0.916008719652036,0,0,0.436094052142534,0,0.506522046658319,14.3001915278276,1.14734648299525,0,0.560677600142307,0,0.49333509683432,0,0.67355336034844,0.490385709340376,0,0,0,0.624320153660641,1.71141546463335,0.747243402759005,0.939475989150119,1.45685649931318,1.40450806702248,1.63323337003915,1.47401180774122,0.103325781175765,0,0.247266929278557,0.910161361938026,0.718618141816238,1.34668891163253,1.12606667884768,1.6623846929051,0.877955241761676,0.612975591598039,0.150238058906597,0,1.61450672119976,0,0.423863802319124,2.40072876867522,0.103052529238439,0.515281080091258,0.37223371266318,0.506328996723799,0,0,0.0920498986422993,0.161646056818812,0.355009592516614,0.503760491138201,0,0.193260853163297,1.09098448236334,1.43402297694502,0,0,0,0,0,0,1.56449532329816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.40241773803446,0,0,0,0,0,0,0,0.171567810298526,0.768251997860379,0,0.201057944823262,0.0925884451585296,0.651616610620649,1.03993478527958,0,0,0.234817388471643,0.721832238805369,1.85194205030644,0,0,0,0,0,0,0.93733833986777,0.503946384596579,1.55952606966625,0,0.581267877027924,1.53353071666084,0,0,0,0,0,0,0,1.17217447210047,0,0.102827492703324,0,0,1.12131084345361,0,0.2933531432838,0,0,0,0,0,1.28603687131071,4.25547396069835,1.3321108950805,0,0,0,0.325736184293735,0,0,0,0.871533458600294,0.399891964728228,0,0,0,0.718874566474748,0,0,0.579125226670317,0.205476322550383,1.25342674267927,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300946099727719,0,0,0,0.184369168541703,0.434418072340414,0,0.343143423810856,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308419387605311,1.06537035187876,0.739144404124282,0.519254429183621,0.581051892299796,0,0.802025881213139,0.0920809889358963,0.34444334449382,0.182091168006717,0.131124414959424,0,0.231046011313244,0,0,0,0,0.510281115829547,0,1.54227252690289,0.270946437543853,0,0,0.831076008928724,0,0,0,0,0.328014645699706,0.325378394664303,0,0.0915694648183434,0,2.29706215198469,0.650060246036521,1.6068392984416,0,0.770243085573222,0.460511024178389,0.964856007391714,0,0.290033387828457,1.02271952899321,0,0.165284915360978,0.192190067365106,3.95599408733211,0,0,3.46293581513704,1.3940745403212,0,1.06461206063404,1.73986598415015,0.9266210955196,2.28999818787186,0,0.632758849437452,0,2.04718233049067,0,1.90921948755562,0,0,0,0.353437207037059,0.606547444719948,0,0.421258456238981,0,0.487426979262569,0,0,0,1.13008116620243,0.551365343546124,0,0.438450885253763,0,0,0,1.239293992399,1.69017361519345,0.573645408816206,0,0.35667105148125,1.41904425628239,0,0,1.13841952129715,0.349934720244983,0.769776901804097,2.68120910214315,2.17781969722645,0,2.58303223602738,1.68471475667626,0.443430153536676,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.9488432172667,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111308705022906,0,0,0,0,0,0,0,0,0,0,0,0,0,1.11136990144637,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113942055847001,0,0,0,0,0.274792780205587,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0870592065804026,0.17472666824203,0.51595809741485,0,0,0,0,0,0,0.274083849293502,0,0,0,0.0801588202515337,0,0,0.144090417154106,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.542999601753713,0,1.63293680054705,0,0.164185041498678,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.249960815924213,0,0,0,0,0,0.298509605773748,0,0.554805861502613,1.32582103692562,4.77979013329893,1.77962244319307,1.83072054717539,2.11723293268535,0.621748802331122,1.18284119991707,0.63718706865481,0.449803112163605,1.55262956876259,1.24411862352257,0.797525143673985,0.521745061811734,1.35231848097497,0.380805212168795,0.406870733204662,0.363697318405119,0,3.24823631914946,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.530067437837643,0,0.337884881306145,0,0,0,0,0,0,0,0,0.245772908753719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231051332300676,0,0,0,0,0.20170506870352,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111231401892069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22910686854405,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0802413666891683,0,0,0,0,0,0,0,0,0.462175628631418,0.432626562123789,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0,0,0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|short_description=p@chr12:65997532..65997546,- | |||
}} | }} |
Latest revision as of 11:25, 24 July 2015
Short description: | p@chr12:65997532..65997546, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:65997532..65997546, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesenchymal stem cell of the bone marrow | 3.51e-18 | 6 |
bone marrow cell | 1.29e-10 | 10 |
mesodermal cell | 3.09e-08 | 121 |
embryonic cell | 7.54e-08 | 250 |
cardiac mesenchymal cell | 1.69e-07 | 4 |
migratory trunk neural crest cell | 1.69e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
artery | 5.98e-11 | 42 |
arterial blood vessel | 5.98e-11 | 42 |
arterial system | 5.98e-11 | 42 |
splanchnic layer of lateral plate mesoderm | 6.67e-11 | 83 |
epithelial tube open at both ends | 7.67e-11 | 59 |
blood vessel | 7.67e-11 | 59 |
blood vasculature | 7.67e-11 | 59 |
vascular cord | 7.67e-11 | 59 |
multilaminar epithelium | 1.70e-10 | 83 |
vessel | 3.71e-10 | 68 |
vasculature | 2.24e-09 | 78 |
vascular system | 2.24e-09 | 78 |
epithelial vesicle | 4.99e-09 | 78 |
aorta | 5.09e-08 | 21 |
aortic system | 5.09e-08 | 21 |
somite | 5.36e-08 | 71 |
presomitic mesoderm | 5.36e-08 | 71 |
presumptive segmental plate | 5.36e-08 | 71 |
dermomyotome | 5.36e-08 | 71 |
trunk paraxial mesoderm | 5.36e-08 | 71 |
cardiovascular system | 5.57e-08 | 109 |
paraxial mesoderm | 7.82e-08 | 72 |
presumptive paraxial mesoderm | 7.82e-08 | 72 |
dense mesenchyme tissue | 1.13e-07 | 73 |
circulatory system | 1.24e-07 | 112 |
systemic artery | 2.26e-07 | 33 |
systemic arterial system | 2.26e-07 | 33 |
mesoderm | 3.63e-07 | 315 |
mesoderm-derived structure | 3.63e-07 | 315 |
presumptive mesoderm | 3.63e-07 | 315 |
epithelial tube | 4.34e-07 | 117 |