FFCP PHASE1:Hg19::chr13:99127804..99127827,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr13:99127804..99127827,- to FFCP PHASE1:Hg19::chr13:99127804..99127827,-: NSchange) |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr13:99127804..99127827,- | |||
|coexpression_cluster_id=C65 | |||
|description=CAGE_peak_at_chr13:99127804..99127827,- | |||
|id=chr13:99127804..99127827,- | |||
|ontology_enrichment_celltype=CL:0002057!4.04e-33!42;CL:0000860!4.21e-30!45;CL:0002194!9.84e-18!63;CL:0000576!9.84e-18!63;CL:0000040!9.84e-18!63;CL:0000559!9.84e-18!63;CL:0002009!7.30e-17!65;CL:0000766!2.76e-16!76;CL:0000839!3.78e-16!70;CL:0000557!9.04e-16!71;CL:0000763!4.40e-12!112;CL:0000049!4.40e-12!112;CL:0002087!4.11e-07!119 | |||
|ontology_enrichment_celltype_v019=CL:0000860;4.95e-105;33!CL:0002057;4.95e-105;33!CL:0000473;3.15e-72;39!CL:0000234;3.15e-72;39!CL:0000576;2.03e-48;48!CL:0000766;2.12e-26;69!CL:0000763;1.39e-14;100!CL:0002586;4.43e-13;3!CL:0002087;2.41e-12;104!CL:0000149;6.21e-10;4!CL:0000738;1.06e-08;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,4.27e-89,42;CL:0002057,4.27e-89,42;CL:0000473,4.55e-77,48;CL:0000234,4.55e-77,48;CL:0002194,3.15e-60,59;CL:0000576,3.15e-60,59;CL:0000040,3.15e-60,59;CL:0000559,3.15e-60,59;CL:0002009,4.70e-58,61;CL:0000839,6.26e-57,66;CL:0000557,5.51e-56,67;CL:0000766,1.19e-51,72;CL:0000763,1.73e-34,108;CL:0000049,1.73e-34,108;CL:0002031,2.72e-30,120;CL:0002087,9.44e-30,115;CL:0000738,6.99e-26,136;CL:0002032,2.69e-22,161;CL:0000837,2.69e-22,161;CL:0000037,4.65e-21,168;CL:0000988,1.31e-19,177;CL:0002586,2.90e-13,3;CL:0000149,4.53e-10,4;CL:0000134,2.08e-07,354;CL:0002320,4.05e-07,361 | |||
|ontology_enrichment_development_v019=CL:0002057;1.59e-66;42!CL:0000049;1.41e-12;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!8.94e-14!80;UBERON:0001474!1.18e-13!86;UBERON:0002390!2.70e-11!102;UBERON:0003061!2.70e-11!102;UBERON:0004765!9.57e-11!101;UBERON:0001434!9.57e-11!101;UBERON:0002193!1.03e-10!112;UBERON:0002405!3.60e-10!115;UBERON:0007625!1.57e-09!11 | |||
|ontology_enrichment_uberon_v019=UBERON:0000966;1.15e-13;5!UBERON:0005388;1.15e-13;5!UBERON:0001802;1.15e-13;5!UBERON:0001781;4.43e-13;3!UBERON:0001782;4.43e-13;3!UBERON:0007625;5.18e-13;11!UBERON:0000019;7.57e-10;19!UBERON:0000047;7.57e-10;19!UBERON:0004088;7.57e-10;19!UBERON:0010230;7.57e-10;19!UBERON:0000970;2.61e-09;20!UBERON:0002104;8.01e-09;21!UBERON:0001456;8.01e-09;21!UBERON:0000020;5.62e-08;23!UBERON:0001032;1.32e-07;24!UBERON:0004456;1.32e-07;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.38e-48,76;UBERON:0001474,1.52e-44,82;UBERON:0004765,5.51e-40,90;UBERON:0002405,1.78e-38,93;UBERON:0002390,3.66e-36,98;UBERON:0003061,3.66e-36,98;UBERON:0001434,2.66e-35,100;UBERON:0002193,3.57e-32,108;UBERON:0002204,9.19e-20,167;UBERON:0003081,3.99e-16,203;UBERON:0001782,2.90e-13,3;UBERON:0005424,2.90e-13,3;UBERON:0007625,4.11e-13,11;UBERON:0000966,1.55e-11,6;UBERON:0005388,1.55e-11,6;UBERON:0001802,1.55e-11,6;UBERON:0001781,4.53e-10,4;UBERON:0000019,2.25e-09,20;UBERON:0000047,2.25e-09,20;UBERON:0010312,2.25e-09,20;UBERON:0004088,2.25e-09,20;UBERON:0010230,2.25e-09,20;UBERON:0003072,2.25e-09,20;UBERON:0004128,2.25e-09,20;UBERON:0003071,2.25e-09,20;UBERON:0000926,2.86e-09,315;UBERON:0004120,2.86e-09,315;UBERON:0006603,2.86e-09,315;UBERON:0000970,6.95e-09,21;UBERON:0002104,6.95e-09,21;UBERON:0001456,1.94e-08,22;UBERON:0000020,1.17e-07,24;UBERON:0001032,1.17e-07,24;UBERON:0004456,1.17e-07,24 | |||
|phase1_expression=0.363356758541113,0,0.140954404095971,1.0007329835313,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0,0.273748850145768,0,0,0,0,0.786728553697808,0,0.77408061658038,0,0,0,0,0,0,0,0.200544447470142,0,0,0,0,13.0858414901608,18.1380452970629,12.6143711817664,8.59987436551033,10.2791972005456,5.57471467611186,8.05538698502021,9.22178543504762,9.45928919554341,2.06847408441971,7.10033151942209,2.70852973188684,16.7535682192918,28.9280519061317,27.6409885867454,14.6920268338033,23.4278189765548,9.59005688698562,15.1731598085889,15.5581652944873,12.7867425159808,2.61188314765726,6.24123747160254,3.73693349397345,6.53246529667532,9.38669253156363,10.8594422352558,2.42159801053347,6.2607198117886,4.43047342417238,0,0,0,0,0,0,0,0.19891667719909,0,0,0,0,0,0,0,0,0,0,0,0,0,1.12101712596307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.49778823507051,0.221729397462564,0.175669571386252,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.81014194788176,0,0,0,0,0.949265659568129,0,0,0,0,0,0,0,0,0,0,0,0,0,0.269421344139376,0,0,0,0.234321431833797,0,0,0,0,0,0,0.204154171254893,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243947412259191,0.265059536642971,0.116193942869518,0.10366105501537,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.44331342025273,1.39116485970092,0.117408694235822,0.144366447761074,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.84901711427775,0,0,0,0,0,0,0,0,0,0,0.224262168690721,0.87192013766656,0.07333828582095,0.258543431515556,0,0,0,0,0,0,0.266422179016099,0.142977993658148,1.08524321078289,0,0,0,0.791951872933429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343143423810856,0,0.215714200818617,0.106727557803444,0,0,0,0,0,0,0.128139149255701,0,0,0,0,0.177561725313127,0.0821271560138091,0,0,0,0,0,0,0,0,0,0,0,0,0.105551628892876,0,1.02056223165909,0,0,0.270946437543853,0,0,0.831076008928724,0,0,0,2.82095137628028,2.95213181129735,1.95227036798582,0.103041011647722,0.0915694648183434,0.082509499920588,0,0,0,0.096670718292122,0,0,0,0,0,0,0.0890320356467374,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0.744316738719335,1.89827654831236,0.190630193923825,0,0.42793898803392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.578775534266688,0,0,0,0,0.430234056612155,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.324621940274555,0,0,0,0,0,0,0,0,0.343505344755765,0,0,0,0,0.835218521685727,0,0.540911356951966,0.33307196799782,0,0,0,0,0,0,0,0,0,0,0,0,0.329607748453519,0,0,0,0,0,0,0,0,0.179021174675609,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0.254253650292766,0,0,0,0,0,0,0,0.331737779793674,0.591095237907095,0,0,0,0,0.227884111694002,0.23056390438806,0.179515288819544,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.265372693510018,0,0,0,0,0.067401132980677,0,0,0,0,0,0,0,0,0.126373159256976,0,0,0,0.661983911750998,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.274083849293502,0,0,0,0.0801588202515337,0,0,0,0,0,0,0,0,0,0,0,0,0.600420288709789,0,0,0,1.05154941711726,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.59045937961861,0,0.803765742325096,0.137539436597234,0.415440338029185,0,0,0.121499113316049,0,0.0788057072991982,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,1.72394293573612,0,0.906496732161005,0,0,0.129282956361551,0.13223260174269,0,0,0.106787412567695,0.157204305099666,0,0.496166021811951,0,0,0,0,0.2506898940227,0,0,0.157054096250234,0,0.122026264901963,0,1.14681839138014,0,0.248385611765534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.15543720058278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161475645631851,0,0,0,0,0,0,0,0,0,0,0,0,0,0.739280431085226,0,0,0,0.126831620387814,0,0,0.496211178389294,0.175871244359621,0,0,0,0.606965604236632,0,0.0887023701626388,0,0,0,0,0,0,0,0.471346769748006,0,0,0,0,5.64664698995585,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102662806856247,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196308467114945,0,0,0,0.187967835959707,0,0,0,0,0,0,0,0,0,0.135982980381829,0,0,0,0,0,0,0,0,0,0.26721740526556,0,0,0,0,0,0.103432995861895,0,0,0,0.0620747142958579,0,0.0636471582781649,0,0,0,0,0.286888821570705,0,0.651226148887796,0,0,0,0,0,0,0,0,0 | |phase1_expression=0.363356758541113,0,0.140954404095971,1.0007329835313,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0,0.273748850145768,0,0,0,0,0.786728553697808,0,0.77408061658038,0,0,0,0,0,0,0,0.200544447470142,0,0,0,0,13.0858414901608,18.1380452970629,12.6143711817664,8.59987436551033,10.2791972005456,5.57471467611186,8.05538698502021,9.22178543504762,9.45928919554341,2.06847408441971,7.10033151942209,2.70852973188684,16.7535682192918,28.9280519061317,27.6409885867454,14.6920268338033,23.4278189765548,9.59005688698562,15.1731598085889,15.5581652944873,12.7867425159808,2.61188314765726,6.24123747160254,3.73693349397345,6.53246529667532,9.38669253156363,10.8594422352558,2.42159801053347,6.2607198117886,4.43047342417238,0,0,0,0,0,0,0,0.19891667719909,0,0,0,0,0,0,0,0,0,0,0,0,0,1.12101712596307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.49778823507051,0.221729397462564,0.175669571386252,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.81014194788176,0,0,0,0,0.949265659568129,0,0,0,0,0,0,0,0,0,0,0,0,0,0.269421344139376,0,0,0,0.234321431833797,0,0,0,0,0,0,0.204154171254893,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243947412259191,0.265059536642971,0.116193942869518,0.10366105501537,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.44331342025273,1.39116485970092,0.117408694235822,0.144366447761074,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.84901711427775,0,0,0,0,0,0,0,0,0,0,0.224262168690721,0.87192013766656,0.07333828582095,0.258543431515556,0,0,0,0,0,0,0.266422179016099,0.142977993658148,1.08524321078289,0,0,0,0.791951872933429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343143423810856,0,0.215714200818617,0.106727557803444,0,0,0,0,0,0,0.128139149255701,0,0,0,0,0.177561725313127,0.0821271560138091,0,0,0,0,0,0,0,0,0,0,0,0,0.105551628892876,0,1.02056223165909,0,0,0.270946437543853,0,0,0.831076008928724,0,0,0,2.82095137628028,2.95213181129735,1.95227036798582,0.103041011647722,0.0915694648183434,0.082509499920588,0,0,0,0.096670718292122,0,0,0,0,0,0,0.0890320356467374,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0.744316738719335,1.89827654831236,0.190630193923825,0,0.42793898803392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.578775534266688,0,0,0,0,0.430234056612155,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.324621940274555,0,0,0,0,0,0,0,0,0.343505344755765,0,0,0,0,0.835218521685727,0,0.540911356951966,0.33307196799782,0,0,0,0,0,0,0,0,0,0,0,0,0.329607748453519,0,0,0,0,0,0,0,0,0.179021174675609,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0.254253650292766,0,0,0,0,0,0,0,0.331737779793674,0.591095237907095,0,0,0,0,0.227884111694002,0.23056390438806,0.179515288819544,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.265372693510018,0,0,0,0,0.067401132980677,0,0,0,0,0,0,0,0,0.126373159256976,0,0,0,0.661983911750998,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.274083849293502,0,0,0,0.0801588202515337,0,0,0,0,0,0,0,0,0,0,0,0,0.600420288709789,0,0,0,1.05154941711726,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.59045937961861,0,0.803765742325096,0.137539436597234,0.415440338029185,0,0,0.121499113316049,0,0.0788057072991982,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,1.72394293573612,0,0.906496732161005,0,0,0.129282956361551,0.13223260174269,0,0,0.106787412567695,0.157204305099666,0,0.496166021811951,0,0,0,0,0.2506898940227,0,0,0.157054096250234,0,0.122026264901963,0,1.14681839138014,0,0.248385611765534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.15543720058278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161475645631851,0,0,0,0,0,0,0,0,0,0,0,0,0,0.739280431085226,0,0,0,0.126831620387814,0,0,0.496211178389294,0.175871244359621,0,0,0,0.606965604236632,0,0.0887023701626388,0,0,0,0,0,0,0,0.471346769748006,0,0,0,0,5.64664698995585,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102662806856247,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196308467114945,0,0,0,0.187967835959707,0,0,0,0,0,0,0,0,0,0.135982980381829,0,0,0,0,0,0,0,0,0,0.26721740526556,0,0,0,0,0,0.103432995861895,0,0,0,0.0620747142958579,0,0.0636471582781649,0,0,0,0,0.286888821570705,0,0.651226148887796,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr13:99127804..99127827,- | |||
}} | }} |
Latest revision as of 17:39, 24 July 2015
Short description: | p@chr13:99127804..99127827, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr13:99127804..99127827, - |
Coexpression cluster: | C65_CD14_Eosinophils_Monocytederived_Basophils_immature_Macrophage_Neutrophils |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 4.27e-89 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.27e-89 | 42 |
defensive cell | 4.55e-77 | 48 |
phagocyte | 4.55e-77 | 48 |
monopoietic cell | 3.15e-60 | 59 |
monocyte | 3.15e-60 | 59 |
monoblast | 3.15e-60 | 59 |
promonocyte | 3.15e-60 | 59 |
macrophage dendritic cell progenitor | 4.70e-58 | 61 |
myeloid lineage restricted progenitor cell | 6.26e-57 | 66 |
granulocyte monocyte progenitor cell | 5.51e-56 | 67 |
myeloid leukocyte | 1.19e-51 | 72 |
myeloid cell | 1.73e-34 | 108 |
common myeloid progenitor | 1.73e-34 | 108 |
hematopoietic lineage restricted progenitor cell | 2.72e-30 | 120 |
nongranular leukocyte | 9.44e-30 | 115 |
leukocyte | 6.99e-26 | 136 |
hematopoietic oligopotent progenitor cell | 2.69e-22 | 161 |
hematopoietic multipotent progenitor cell | 2.69e-22 | 161 |
hematopoietic stem cell | 4.65e-21 | 168 |
hematopoietic cell | 1.31e-19 | 177 |
retinal pigment epithelial cell | 2.90e-13 | 3 |
visual pigment cell | 4.53e-10 | 4 |
mesenchymal cell | 2.08e-07 | 354 |
connective tissue cell | 4.05e-07 | 361 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.38e-48 | 76 |
bone element | 1.52e-44 | 82 |
skeletal element | 5.51e-40 | 90 |
immune system | 1.78e-38 | 93 |
hematopoietic system | 3.66e-36 | 98 |
blood island | 3.66e-36 | 98 |
skeletal system | 2.66e-35 | 100 |
hemolymphoid system | 3.57e-32 | 108 |
musculoskeletal system | 9.19e-20 | 167 |
lateral plate mesoderm | 3.99e-16 | 203 |
pigmented layer of retina | 2.90e-13 | 3 |
presumptive retinal pigmented epithelium | 2.90e-13 | 3 |
pigment epithelium of eye | 4.11e-13 | 11 |
retina | 1.55e-11 | 6 |
photoreceptor array | 1.55e-11 | 6 |
posterior segment of eyeball | 1.55e-11 | 6 |
layer of retina | 4.53e-10 | 4 |
camera-type eye | 2.25e-09 | 20 |
simple eye | 2.25e-09 | 20 |
immature eye | 2.25e-09 | 20 |
ocular region | 2.25e-09 | 20 |
eyeball of camera-type eye | 2.25e-09 | 20 |
optic cup | 2.25e-09 | 20 |
optic vesicle | 2.25e-09 | 20 |
eye primordium | 2.25e-09 | 20 |
mesoderm | 2.86e-09 | 315 |
mesoderm-derived structure | 2.86e-09 | 315 |
presumptive mesoderm | 2.86e-09 | 315 |
eye | 6.95e-09 | 21 |
visual system | 6.95e-09 | 21 |
face | 1.94e-08 | 22 |
sense organ | 1.17e-07 | 24 |
sensory system | 1.17e-07 | 24 |
entire sense organ system | 1.17e-07 | 24 |