FFCP PHASE1:Hg19::chr16:55539371..55539383,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr16:55539371..55539383,+ to FFCP PHASE1:Hg19::chr16:55539371..55539383,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr16:55539371..55539383,+ | |||
|coexpression_cluster_id=C351 | |||
|description=CAGE_peak_at_chr16:55539371..55539383,+ | |||
|id=chr16:55539371..55539383,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.31e-31!180;CL:0000057!5.39e-23!75;CL:0000048!2.08e-10!430;CL:0002620!5.26e-10!23;CL:0000723!5.34e-10!436;CL:0002334!1.85e-09!12;CL:0000680!4.24e-09!57;CL:0000056!4.24e-09!57;CL:0000355!4.24e-09!57;CL:0000034!4.27e-09!444;CL:0000187!7.29e-08!54;CL:0002371!7.40e-08!591;CL:0000183!8.67e-08!59;CL:0000192!1.35e-07!42;CL:0000514!1.35e-07!42;CL:0000393!2.57e-07!60;CL:0000211!2.57e-07!60 | |||
|ontology_enrichment_celltype_v019=CL:0002334;8.25e-17;12!CL:1000306;3.54e-09;4!CL:0002547;3.54e-09;4!CL:0002539;8.71e-08;10!CL:0002580;1.10e-07;3!CL:0002579;2.03e-07;3!CL:0002615;2.97e-07;3!CL:0000057;3.34e-07;73!CL:0002620;3.74e-07;23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.61e-20,76;CL:0002334,4.36e-17,12;CL:0000048,3.80e-13,427;CL:0000723,1.07e-12,433;CL:0000034,4.03e-12,441;CL:0002320,1.96e-11,361;CL:0000134,9.10e-11,354;CL:1000306,1.50e-09,4;CL:0002547,1.50e-09,4;CL:0000219,1.93e-08,386;CL:0000136,2.97e-08,15;CL:0002539,6.08e-08,10;CL:0002580,8.57e-08,3;CL:0002579,1.75e-07,3;CL:0002615,3.75e-07,3;CL:0002620,5.59e-07,23 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2394!3.29e-09!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;4.29e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,2.84e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0003102!1.25e-09!95;UBERON:0002199!1.86e-09!45;UBERON:0002416!1.86e-09!45;UBERON:0004872!2.16e-09!84;UBERON:0000486!1.46e-08!82;UBERON:0004290!1.63e-08!70;UBERON:0001637!2.02e-08!42;UBERON:0003509!2.02e-08!42;UBERON:0004572!2.02e-08!42;UBERON:0001134!2.16e-08!61;UBERON:0002036!2.16e-08!61;UBERON:0003082!2.16e-08!61;UBERON:0002385!2.80e-08!63;UBERON:0001015!2.80e-08!63;UBERON:0000383!2.80e-08!63;UBERON:0000914!3.54e-08!83;UBERON:0002329!3.54e-08!83;UBERON:0003077!3.54e-08!83;UBERON:0003059!3.54e-08!83;UBERON:0007282!3.54e-08!83;UBERON:0009618!3.54e-08!83;UBERON:0007285!3.54e-08!83;UBERON:0004573!3.60e-08!33;UBERON:0004571!3.60e-08!33;UBERON:0004457!5.22e-08!12;UBERON:0000042!5.22e-08!12;UBERON:0002097!1.54e-07!40 | |||
|ontology_enrichment_uberon_v019=UBERON:0004457;2.98e-15;9!UBERON:0000042;2.98e-15;9!UBERON:0003688;5.13e-13;6!UBERON:0002358;5.13e-13;6!UBERON:0003684;5.13e-13;6!UBERON:0001178;5.13e-13;6!UBERON:0004573;1.93e-09;33!UBERON:0004571;1.93e-09;33!UBERON:0004797;3.54e-09;4!UBERON:0000415;3.54e-09;4!UBERON:0007240;3.54e-09;4!UBERON:0005742;3.54e-09;4!UBERON:0005734;3.54e-09;4!UBERON:0004664;3.54e-09;4!UBERON:0004663;3.54e-09;4!UBERON:0000947;8.32e-09;21!UBERON:0010191;8.32e-09;21!UBERON:0004237;8.71e-08;10!UBERON:0004695;8.71e-08;10!UBERON:0002111;8.71e-08;10!UBERON:0004178;8.71e-08;10!UBERON:0000310;8.76e-08;10!UBERON:0001443;5.35e-07;11!UBERON:0002384;7.58e-07;198 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003688,5.63e-13,6;UBERON:0002358,5.63e-13,6;UBERON:0003684,5.63e-13,6;UBERON:0001178,5.63e-13,6;UBERON:0002384,2.71e-11,371;UBERON:0004457,5.55e-11,12;UBERON:0000042,5.55e-11,12;UBERON:0004573,5.10e-10,33;UBERON:0004571,5.10e-10,33;UBERON:0000415,1.50e-09,4;UBERON:0007240,1.50e-09,4;UBERON:0005742,1.50e-09,4;UBERON:0005734,1.50e-09,4;UBERON:0004664,1.50e-09,4;UBERON:0004663,1.50e-09,4;UBERON:0000947,4.39e-09,21;UBERON:0010191,4.39e-09,21;UBERON:0001637,3.05e-08,42;UBERON:0003509,3.05e-08,42;UBERON:0004572,3.05e-08,42;UBERON:0000310,5.78e-08,10;UBERON:0004237,6.08e-08,10;UBERON:0004695,6.08e-08,10;UBERON:0002111,6.08e-08,10;UBERON:0004178,6.08e-08,10;UBERON:0001443,3.69e-07,11;UBERON:0004872,5.91e-07,83;UBERON:0003102,7.00e-07,99;UBERON:0002199,7.93e-07,46;UBERON:0002416,7.93e-07,46 | |||
|phase1_expression=2.90685406832891,7.70761886007539,2.39622486963151,1.0007329835313,2.68176656656373,0,0,0.631719873426831,4.44015567939725,0,0,0,0,0,0,3.36162573225888,4.82155622419182,1.46062018077475,2.43966399395253,0.61560529038394,0.408001382488506,0,0.572471974262113,0,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.50133791063589,1.30361867064741,2.3858578411533,0.486634870302636,0.0945348171640679,0,0.087834785693126,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0.419499436209906,1.10047216776027,0,0,0,0,0,0,1.46437234528902,0,0.81014194788176,0.0892997282840798,0,0,0,0,0.732806975721629,0,0,0,1.49091585508596,1.51956613997496,1.45650098894541,7.74458876021797,2.83734705758686,0.560677600142307,1.06748995729705,2.4666754841716,0,0.404132016209064,0.163461903113459,0.151357427644931,0,0,1.24864030732128,0,0.448346041655403,0,0,0.140450806702248,0.204154171254893,0.122834317311768,0.309977343527296,3.56400857184616,2.47266929278557,0,0.718618141816238,0,0.125118519871964,0.277064115484183,0,0.612975591598039,1.20190447125277,0,1.4351170855109,0.640672166455702,0.847727604638247,2.10063767259082,1.13357782162283,1.28820270022815,1.11670113798954,2.36286865137773,0.974370051611986,1.00973509697646,1.10459878370759,0.646584227275248,3.19508633264953,0.503760491138201,0.339121184620975,0,0,0,0,0,0,0,0,0,0,3.21620469096443,0,1.85747171212792,0.721879481669586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109750285408626,0,0,0,0.325808305310325,1.03993478527958,1.44331342025273,0,0,0,0,0.190254152234598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0,0,0,0,1.03417372606222,0,0,0.797814349754612,1.04007436911366,0,0,0,0.285955987316295,0.542621605391443,0,0,0.355391948742546,0.791951872933429,0.301439377059586,0,0.099972991182057,0,0,0,0,0,0,0.868687840005475,0.61642896765115,0.537182889719687,0,0,0,0,1.01637849688985,0,0.773288812777695,0,0,0,0,0,0.36807447515742,1.00034104211935,0,0,2.49800584316026,0.630809660135739,0.234282829985426,0.300946099727719,9.09630016223939,2.0694614258501,1.32845119707087,0.184369168541703,0.521301686808497,0.391602314925481,2.05886054286514,0,0,0,0,0,0,3.96972492510043,1.38115775959256,5.05188169979532,1.92208723883551,2.04682899626681,3.05622450172854,0,2.15893571323718,1.9531789784444,0.410635780069046,2.07701771673448,1.39452454151951,0,1.60405176242628,0,0.574072240823034,1.0925470080403,3.01586154406675,0,0.0770153371044148,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0,0,0.328014645699706,0,0,0.183138929636687,0,0,0.650060246036521,0,0.580024309752732,0.154048617114644,0.15350367472613,0,0.429680979473094,0.145016693914229,0.0852266274161009,0.267096106940212,0,0,0.127612712494584,0,1.39453664789186,10.7036197922418,0,0.924100740528266,0,0,1.66791797193528,0,0,0,0.38126038784765,0,0,0.636406495851874,0,0.719489830333259,0.54907405947211,0.353437207037059,0.606547444719948,0,0.421258456238981,0.975267478179181,1.21856744815642,2.11300293513511,0.545999645631943,3.95935209470396,0,0,1.32687795048244,0.438450885253763,0,0,0.405820753925408,0,0.281695602532241,0,0.196498082026242,0.35667105148125,0,3.16661452946496,4.28083360847872,0,0.349934720244983,0.0962221127255121,0,0,0.188287601553558,0.43050537267123,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.222617410045812,0,0,0.597743964753209,0,0,0.102268682502155,0,0.622079175323615,0,0,0,0.690503839458535,0,0,0,0,0,0,0,1.44999915086959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.384751292518985,0.569710279235006,0,0.179515288819544,0.108647371922008,0,0.732780747214898,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0.611030144933625,0,0,0,0,0,0,0,0,0,0,0,0.30607276163049,0.379119477770928,0,0,0,0,0,0,0,0.277349346026277,0,0,0,1.22308667769421,0,0,0,0,0.484945082442097,0,0.451961481561065,0.137041924646751,0,0,0,0,0,0,0,0,0,0,0,0,0.135904206073614,0.104602846312333,0.305994652908965,0.577901179803038,0,0,0,0,0,0.279282401272254,0,0,0,0,0,0.0671834724867263,0.360299883542404,0,0,0,0,0,0,0,0,0,0.137539436597234,0,0,0,0,0,0.236417121897595,0.104909176269996,0,0,0,2.1440859791201,1.32418394073086,0,0.542999601753713,1.72844298240254,2.28611152076586,0,0,0.170388021785422,0,0,0,0,0,0,0,0.213574825135389,0.314408610199332,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138348634936231,0,0,0,0,0,0,0.895528817321244,1.16856654923612,0.554805861502613,1.32582103692562,1.0062716070103,2.66943366478961,1.14420034198462,0.453692771289717,0.621748802331122,2.36568239983414,0.477890301491107,2.24901556081802,0.155262956876259,3.7323558705677,1.86089200190596,3.1304703708704,0.601030435988874,2.28483127301277,0.406870733204662,0.727394636810238,0.322231671127465,6.96050639817741,1.99047944349308,0,1.03018711554838,1.34699795506368,0,0,0,0,0.453411851024545,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982829546539238,0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| ||
|short_description=p@chr16:55539371..55539383,+ | |||
}} | }} |
Latest revision as of 09:53, 25 July 2015
Short description: | p@chr16:55539371..55539383, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr16:55539371..55539383, + |
Coexpression cluster: | C351_Fibroblast_Smooth_mesenchymal_Adipocyte_tenocyte_Synoviocyte_Hair |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.61e-20 | 76 |
preadipocyte | 4.36e-17 | 12 |
multi fate stem cell | 3.80e-13 | 427 |
somatic stem cell | 1.07e-12 | 433 |
stem cell | 4.03e-12 | 441 |
connective tissue cell | 1.96e-11 | 361 |
mesenchymal cell | 9.10e-11 | 354 |
fibroblast of tunica adventitia of artery | 1.50e-09 | 4 |
fibroblast of the aortic adventitia | 1.50e-09 | 4 |
motile cell | 1.93e-08 | 386 |
fat cell | 2.97e-08 | 15 |
aortic smooth muscle cell | 6.08e-08 | 10 |
preadipocyte of the breast | 8.57e-08 | 3 |
omentum preadipocyte | 1.75e-07 | 3 |
adipocyte of omentum tissue | 3.75e-07 | 3 |
skin fibroblast | 5.59e-07 | 23 |
Ontology term | p-value | n |
---|---|---|
omentum | 5.63e-13 | 6 |
peritoneum | 5.63e-13 | 6 |
abdominal cavity | 5.63e-13 | 6 |
visceral peritoneum | 5.63e-13 | 6 |
connective tissue | 2.71e-11 | 371 |
cavity lining | 5.55e-11 | 12 |
serous membrane | 5.55e-11 | 12 |
systemic artery | 5.10e-10 | 33 |
systemic arterial system | 5.10e-10 | 33 |
artery wall | 1.50e-09 | 4 |
tunica adventitia of artery | 1.50e-09 | 4 |
adventitia | 1.50e-09 | 4 |
tunica adventitia of blood vessel | 1.50e-09 | 4 |
aorta tunica adventitia | 1.50e-09 | 4 |
aorta wall | 1.50e-09 | 4 |
aorta | 4.39e-09 | 21 |
aortic system | 4.39e-09 | 21 |
artery | 3.05e-08 | 42 |
arterial blood vessel | 3.05e-08 | 42 |
arterial system | 3.05e-08 | 42 |
breast | 5.78e-08 | 10 |
blood vessel smooth muscle | 6.08e-08 | 10 |
arterial system smooth muscle | 6.08e-08 | 10 |
artery smooth muscle tissue | 6.08e-08 | 10 |
aorta smooth muscle tissue | 6.08e-08 | 10 |
chest | 3.69e-07 | 11 |
splanchnic layer of lateral plate mesoderm | 5.91e-07 | 83 |
surface structure | 7.00e-07 | 99 |
integument | 7.93e-07 | 46 |
integumental system | 7.93e-07 | 46 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 2.84e-07 | 14 |